| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3294 |
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| Symbol | dxs1 |
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| ID | 5712351 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 3459972 |
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| End bp | 3461903 |
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| Gene Length | 1932 bp |
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| Protein Length | 643 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641269222 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_001534628 |
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| Protein GI | 159045834 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGACC GTCCCCATAC CCCCGTGCTC GACCGGGTGA AGACCCCGGA CGACATGAAG
GGGCTGAGCG ACCGGGAACT GGTCGCACTG GCGCGCGATC TGCGGGCCGA AACGATCAGC
GCGGTGTCGG TTACCGGCGG GCATCTGGGG GCCGGGCTGG GGGTGGTGGA GCTGACCGTG
GCGCTCCATG CGGTGTTCGA CGCGCCCCGG GACCGGATCA TCTGGGACGT CTCGCACCAG
TGCTATCCTC ACAAGATCCT GACCGGGCGG CGCGACCGCA TTCGCACGCT GCGGATGAAG
GACGGGCTGT CGGGGTTCAC CAAGCGGTCC GAGAGCCCTT ATGACCCTTT TGGGGCGGCG
CATTCCTCGA CCTCGATCTC CGCCGCGCTG GGCTTTGCCG TGGCGCGGGA CCTGGGCGGC
GCGCCGGAGC ATGGGATCGG CGACGCGATC GCGGTGATCG GGGACGGGGC GATCAGTGCG
GGCATGGCGT TCGAGGCGCT GAACAACGCG GGTCATCTGA AAAAGCGCCT GATCGTGATC
CTGAACGACA ACGAGATGTC CATCGCGCCG CCCACGGGGG CGATGTCGAG CTATCTCAAC
CGGCTCTATG CCGGCGCGCC GTTCCAGGAG TTCAAGGCCG CCGCCAAGGG GGCGGTCAGC
CTGCTGCCGC CGCCGTTCCA GGAGGGGGCA AAGCGCGCCA AGGACATTCT CAAGCACATG
ACCATCGGCG GCACCTTGTT CGAGGAGCTG GGCTTTTCCT ATGTCGGGCC GATCGACGGC
CATGATATGG AGCAGCTTCT GAGCGTGTTG CGGACGGTGA AGGCCCGGGC CGACGGGCCG
ATCCTGATCC ATGCGATCAC CAAGAAGGGC AAGGGCTATG CGCCCGCCGA GGGGGCCGCG
GACAAGGGCC ATGCCACGGC GAAGTTCGAC GTGGTCTCCG GCGCGCAGAA GAAGGCCCCG
TCGAACGCGC CGACCTATAC CAATGTCTTC GCCGAAACCC TGATCGACGA GGCGGAGCGG
GATTCGCGGA TCGTGGCGGT CACGGCGGCG ATGCCTTCGG GCACCGGGCT CGACAAGTTC
GCCAAGCGGT TCGCGGCGCG GACCTTCGAT GTGGCCATTG CCGAGCAGCA TGGCGTGACC
TTCTGCGCCG GGCTGGCGGC GGGCGGGATG AAGCCCTTCT GCACGATGTA CTCGACCTTT
TTGCAGCGCG GCTATGACCA GGTGGTCCAT GACGTGGCCT TGCAGAACCT GCCCGTGCGC
TTCGCCATCG ACCGGGCCGG GCTCGTGGGC GCGGACGGGG CGACCCATGC GGGGGCCTAT
GACACGGCGT ACCTGTCGAA CCTGCCCAAC ATGGTGGTGA TGGCCGCGGC CGACGAGGCG
GAGTTGCGGC ACATGGTGGC CACCGCGGTC GCCCATGACA GCGGACCCAT CGCCTTTCGT
TTCCCGAGGG GCGAGGGCGT GGGCGTCGAG TTGCCGGAGC GCGGCGTGCC CCTGGAGATC
GGCAAGGGCC GGATCATCGC GGAAGGCAGC CGGGTTGCGA TCCTGTCCTT CGGCACGCGG
CTGGCCGAGG TGCGGGAGGC CTGCGAGGCG CTCACCGCTC GGGGGATCAC GCCCACCGTG
GCCGATGCGC GCTTTGCCAA ACCGCTGGAC CGGGACCTGA TCCTGCGGCT GGCGGCCGAG
CACGAGGCGT TGATCACCAT CGAGGAGGGC GCGGTGGGCG GCTTCGGTTC CCATGTGGCG
CAGCTTCTGT CGGAAGAGGG GGTGTTCGAT ACGGGCCTCA AATTCCGGTC CATGGTGTTG
CCCGATACCT TCATCGACCA GGCGAGCCCG CGCGACATGT ACGATATCGC CGGTCTGAAC
GCGCCGGATA TCGAGGCAAA GGTGCTCTCG GTGCTCGGCG TGGCCCAGAT CGACCGCCGC
GCGCAATCCT GA
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| Protein sequence | MSDRPHTPVL DRVKTPDDMK GLSDRELVAL ARDLRAETIS AVSVTGGHLG AGLGVVELTV
ALHAVFDAPR DRIIWDVSHQ CYPHKILTGR RDRIRTLRMK DGLSGFTKRS ESPYDPFGAA
HSSTSISAAL GFAVARDLGG APEHGIGDAI AVIGDGAISA GMAFEALNNA GHLKKRLIVI
LNDNEMSIAP PTGAMSSYLN RLYAGAPFQE FKAAAKGAVS LLPPPFQEGA KRAKDILKHM
TIGGTLFEEL GFSYVGPIDG HDMEQLLSVL RTVKARADGP ILIHAITKKG KGYAPAEGAA
DKGHATAKFD VVSGAQKKAP SNAPTYTNVF AETLIDEAER DSRIVAVTAA MPSGTGLDKF
AKRFAARTFD VAIAEQHGVT FCAGLAAGGM KPFCTMYSTF LQRGYDQVVH DVALQNLPVR
FAIDRAGLVG ADGATHAGAY DTAYLSNLPN MVVMAAADEA ELRHMVATAV AHDSGPIAFR
FPRGEGVGVE LPERGVPLEI GKGRIIAEGS RVAILSFGTR LAEVREACEA LTARGITPTV
ADARFAKPLD RDLILRLAAE HEALITIEEG AVGGFGSHVA QLLSEEGVFD TGLKFRSMVL
PDTFIDQASP RDMYDIAGLN APDIEAKVLS VLGVAQIDRR AQS
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