| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_2242 |
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| Symbol | |
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| ID | 5747805 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 2459892 |
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| End bp | 2461808 |
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| Gene Length | 1917 bp |
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| Protein Length | 638 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641297326 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_001563267 |
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| Protein GI | 160897685 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.0315294 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCGATG GTCTTGCGGC CATCAAGATA TCTAGCATGA CCACGAACAC CTACTCCCTG
CTGCAGACCA TCGACGATCC CTCGGATCTG AGGCGTCTGT CGCGTGCCGA ACTCAAGACC
CTGGCCCAGC AACTGCGTGC CTATGTGCTC GACAGCGTCT CCAAGACCGG CGGGCATCTG
AGTTCCAACC TGGGGACGGT GGAGCTGACG GTGGCGCTGC ATGCGGTGTT CGACACGCCC
TACGACCGCG TGGTCTGGGA CGTGGGCCAC CAGACCTATC CGCACAAGAT CCTCACGGGC
CGGCGCGAGC GCATGGCCTC GCTGCGCCAG TTCGGCGGCC TGTCGGGCTT TCCGCAGCGC
GCCGAGAGCC CGTACGACAC CTTCGGCACG GCGCACTCCT CCACCAGCAT CTCGGCCGCC
CTGGGCATGG CCCTGGCCGC CAAGCAAAAG GGCGAGGACC GCCGCGCCAT CGCCGTCATC
GGCGACGGCG CCATGACGGC CGGCATGGCC TTCGAGGCGC TGAACAACGC CGGCGTGACC
GATGCCAACC TGCTGGTCAT TCTCAACGAC AACGACATGA GCATCAGCCC GCCCGTGGGC
GCGCTCAACC GCTACCTGGC CCAGCTCATG AGCGGGCAGT TCTACGCCAA GGCGCGCGAC
ATGGGCAAGA GCGTGCTCAA GCAGGTGCCT CCGCTGCTGG AGCTGGCCAA GCGGCTGGAG
CAGCAGGCCA AGGGCATGGT CGTGCCGGCC ACGCTGTTCG AGAACTTCGG CTTCAACTAC
ATCGGCCCCA TCGACGGGCA TGACCTCGAT TCGCTGATCC CCACGCTGGA GAACATCAAG
AGCCTCAAGG GCCCGCAGTT CCTGCATGTG GTCACCAAGA AAGGCCAGGG CTACAAGCTG
GCCGAGGCCG ATCCCGTGGC CTACCACGGC CCCGGCAAGT TCGATCCCAG CGTGGGCCTG
GTCAAGCCGG CCACGCCCCC GAAGCAGACC TTCACCCAGG TCTTCGGCCA TTGGCTGTGC
GACATGGCGG ACAAGGACCA GCGCCTGGTG GGCATCACCC CCGCCATGCG CGAGGGCTCG
GGCATGGTGG AGTTCCACAA GCGCTTTCCG GGCCGCTACT ACGACGTGGG CATTGCCGAG
CAGCATGCGG TCACCTTCGC GGCCGGCATG GCCTGCGAAG GCCTCAAGCC CGTGGTTGCC
ATCTACTCCA CCTTCCTGCA GCGCGGCTAC GACCAGCTGA TCCACGACGT GGCGCTGCAA
AAGCTGCCCG TGGTCTTTGC GCTGGACCGC GCAGGCCTGG TCGGCGCCGA TGGCGCCACG
CACGCAGGTG CGTATGACAT CGCCTTCGTG CGCTGCATTC CGCACATGAG CATGGCCTGC
CCGGCCGACG AGCGCGAATG CCGCCAGCTG CTGACCACGG CCTACGAGCA GGACCATCCC
GTGGCCGTGC GCTACCCGCG TGGCGCTGGC GTGGGTGTGG CGCCGCTGGA GAGCCTGGAG
GGCCTGCCCT TCGGCAAGGG CGAAGTGCGC CGCGAGTCTG CCAAGAAGCA GGTCGCCATC
CTGGCCTTCG GCACCCTGCT GTACCCGGCC CTGGCCGCGG CCGAGGCGCT GGACGCCACC
GTGGTCAACA TGCGCTGGGC CAAGCCGCTG GACGAGGAAC TGCTGCGCCA GGTGGCCTCC
ACGCACGAGC TCATCGTCAC CGTGGAAGAG GGCTGCATCA TGGGCGGCGC TGGCAGCGCC
GTGGCCGAGT CGCTGCAGGC CGCCGGCATC ACGCGCCAGC TGCTGCAGCT GGGCCTGCCC
GACGAGTTCA TCGAGCACGG CGATCCCGCC AAGCTGCTGG CCCTGCAGGG CCTGGATGCG
GCGGGCATCG AGGCCTCGGT CCGCGCCCAT CTGGCACCCG AGCGCGCCGT CGCCTGA
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| Protein sequence | MGDGLAAIKI SSMTTNTYSL LQTIDDPSDL RRLSRAELKT LAQQLRAYVL DSVSKTGGHL
SSNLGTVELT VALHAVFDTP YDRVVWDVGH QTYPHKILTG RRERMASLRQ FGGLSGFPQR
AESPYDTFGT AHSSTSISAA LGMALAAKQK GEDRRAIAVI GDGAMTAGMA FEALNNAGVT
DANLLVILND NDMSISPPVG ALNRYLAQLM SGQFYAKARD MGKSVLKQVP PLLELAKRLE
QQAKGMVVPA TLFENFGFNY IGPIDGHDLD SLIPTLENIK SLKGPQFLHV VTKKGQGYKL
AEADPVAYHG PGKFDPSVGL VKPATPPKQT FTQVFGHWLC DMADKDQRLV GITPAMREGS
GMVEFHKRFP GRYYDVGIAE QHAVTFAAGM ACEGLKPVVA IYSTFLQRGY DQLIHDVALQ
KLPVVFALDR AGLVGADGAT HAGAYDIAFV RCIPHMSMAC PADERECRQL LTTAYEQDHP
VAVRYPRGAG VGVAPLESLE GLPFGKGEVR RESAKKQVAI LAFGTLLYPA LAAAEALDAT
VVNMRWAKPL DEELLRQVAS THELIVTVEE GCIMGGAGSA VAESLQAAGI TRQLLQLGLP
DEFIEHGDPA KLLALQGLDA AGIEASVRAH LAPERAVA
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