| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_0161 |
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| Symbol | |
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| ID | 3918296 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Novosphingobium aromaticivorans DSM 12444 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007794 |
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| Strand | + |
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| Start bp | 158147 |
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| End bp | 160069 |
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| Gene Length | 1923 bp |
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| Protein Length | 640 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640442886 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_495444 |
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| Protein GI | 87198187 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCAAG AACCGGCAAC GCCGTTGCTA GACACGGTCA AGACCCCAGA CGACCTTCGC
AAGCTTGCGC CAACGCAGCT CCGCCAACTG GCGGACGAAC TGCGTGTCGA GATGATATCC
GCCGTCGGCC AGACGGGCGG GCACCTCGGT TCCGGCCTGG GCGTGGTCGA GCTGACCGTG
GCAATCCACT ATGTGTTCAA CACGCCCGAG GACAGGCTTG TGTGGGACGT GGGCCACCAG
GCCTATCCTC ACAAGATCCT GACCGGGCGG CGCGACCGGA TCCGCACCCT GCGTCAGGCA
GGCGGCCTTT CCGGCTTCAC CAAGCGCAGC GAGAGCGAGT ACGACCCTTT CGGGACGGCG
CACTCGTCCA CCTCGATTTC AGCGGCGCTC GGCTTTGCCA TCGCTAACAA GCTTTCGGGC
AGACTGGGCA AGGGCATCGC GGTGATCGGC GATGGCGCCA TGAGCGCGGG CATGGCCTAC
GAAGCGATGA ACAACGCCGA GGCCGCAGGC AATCGGCTGA TCGTCATTCT CAACGACAAC
GACATGTCCA TCGCGCCGCC CGTCGGCGGG CTTTCGGCCT ATCTGGCGCG GCTGGTTTCG
TCCGGTCCGT TTTTGGGGCT CCGCGACATT GCCCGCAGGC TTTCGCGCAA GCTGCCCCGC
CCGCTGCACG AAGCCGCGCG CAAGACCGAC GAGTTCGCTC GCGGCATGGC GATGGGCGGT
ACCCTGTTCG AGGAGCTTGG CTTCTATTAC GTCGGCCCGA TTGACGGCCA CAACATCGAC
CAGCTCATCC CGGTTCTCGA AAACGTGCGC GATGCGGCCG AAGGGCCGTG TCTGATCCAT
GTGGTGACGC AGAAGGGCAA GGGGTATGCC CCTGCCGAAG CCGCGGCCGA CAAGTATCAC
GGCGTGCAGA AGTTCGACGT CATCACTGGT GAGCAGGTGA AGGCCAAGGC TGCCGCGCCC
GCCTATCAGA ACGTGTTCGG CGAGACGCTG GCCAAGCTGG CGGACGCCGA CCCGACGATC
TGCGCGATCA CCGCCGCAAT GCCCAGCGGC ACCGGCGTCG ACAAGTTTGC CAAGGCTCAT
CCCGACCGCA CCTTCGATGT CGGCATTGCC GAACAGCATG CGGTGACCTT TGCTGCGGGC
CTCGCCGCAG AAGGGATGCG GCCGTTCTGC GCGATCTATT CGACCTTCCT GCAGCGCGCT
TTCGACCAGG TCGTCCACGA CGTGGCGATC CAGAACCTGC CGGTGCGCTT CGCCATCGAC
CGCGCAGGCC TGGTGGGCGC GGATGGTGCA ACCCACGCCG GTTCGTTCGA CGTGACCTAT
CTGGCAACGT TGCCGAACCT GGTCGTCATG GCTGCTGCCG ACGAGGCGGA ACTGGTCCAC
ATGACCTATA CCGCGGCACT GCATGACAGC GGCCCGATCG CTTTCCGCTA TCCGCGCGGA
AACGGTGTGG GCGTGCCACT GCCCGAGGTT CCCGAGCGGC TCGAGATTGG CAAGGGCCGG
ATCATCAGGC AGGGTAGCAA GGTCGCGCTG CTGTCGTTGG GTACGCGGCT GGCAGAGGCG
CTCAAGGCTG CCGATCAGCT CGACGCCAGG GGATTGTCGA CGACTGTCGC CGACCTGCGC
TTTGCCAAGC CGCTGGACGT GGCGCTGATC CGTCAGCTGA TGACCACGCA TGACGTGATC
GTGACGGTGG AGGAAGGCTC GATCGGCGGC CTGGGCGCGC ACGTCCTGAC CATGGCGAGC
GACGAGGGAC TGGTGGACGG GGGCCTCAAG ATCAGGACCA TGCGCTTGCC CGATCTGTTC
CAGGACCACG ACGCGCCTGA AAAGCAGTAT GACGAGGCGG GGCTCAACGC GCCGCATATC
GTCGATACCG TACTGAAGGC GCTGCGGCAC AACAGCGCCG GGGTAAGTGA AGCGCGGGCC
TGA
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| Protein sequence | MSQEPATPLL DTVKTPDDLR KLAPTQLRQL ADELRVEMIS AVGQTGGHLG SGLGVVELTV
AIHYVFNTPE DRLVWDVGHQ AYPHKILTGR RDRIRTLRQA GGLSGFTKRS ESEYDPFGTA
HSSTSISAAL GFAIANKLSG RLGKGIAVIG DGAMSAGMAY EAMNNAEAAG NRLIVILNDN
DMSIAPPVGG LSAYLARLVS SGPFLGLRDI ARRLSRKLPR PLHEAARKTD EFARGMAMGG
TLFEELGFYY VGPIDGHNID QLIPVLENVR DAAEGPCLIH VVTQKGKGYA PAEAAADKYH
GVQKFDVITG EQVKAKAAAP AYQNVFGETL AKLADADPTI CAITAAMPSG TGVDKFAKAH
PDRTFDVGIA EQHAVTFAAG LAAEGMRPFC AIYSTFLQRA FDQVVHDVAI QNLPVRFAID
RAGLVGADGA THAGSFDVTY LATLPNLVVM AAADEAELVH MTYTAALHDS GPIAFRYPRG
NGVGVPLPEV PERLEIGKGR IIRQGSKVAL LSLGTRLAEA LKAADQLDAR GLSTTVADLR
FAKPLDVALI RQLMTTHDVI VTVEEGSIGG LGAHVLTMAS DEGLVDGGLK IRTMRLPDLF
QDHDAPEKQY DEAGLNAPHI VDTVLKALRH NSAGVSEARA
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