| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_0579 |
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| Symbol | |
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| ID | 6109488 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | - |
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| Start bp | 635224 |
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| End bp | 637119 |
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| Gene Length | 1896 bp |
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| Protein Length | 631 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641620336 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_001747453 |
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| Protein GI | 170719765 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCACGA CGTTTCAAGA GATCCCCCGC GAACGCCCGG TCACGCCGTT GCTCGACCGC
GCTGACACGC CTGCCGGCCT GCGCCGGCTG GCCGAAGCCG ACCTTGAGCA CCTGGCCGAC
GAGCTGCGCC AGGAGCTGCT CTACACCGTG GGTCAGACCG GTGGGCATTT TGGCGCCGGT
CTGGGCGTGA TCGAACTGAC GATCGCCCTG CACTACGTCT TCGACACCCC GGACGACCGG
CTGGTGTGGG ACGTCGGCCA TCAAGCCTAC CCGCACAAGA TCCTCACCGG CCGGCGCAAC
CGCATGCTGA GCCTGCGCCA GAAGGACGGG ATCGCCGCCT TCCCGCGCCG CAGCGAGAGT
GAGTACGACA CCTTTGGCGT CGGCCATTCC AGCACCTCGA TCAGCGCCGC ACTGGGAATG
GCCATTGCCG CCCGCCTGCA GAACAGCGCG CGCAAGTCGA TTGCAGTGAT CGGTGACGGT
GCCCTGACAG CCGGTATGGC GTTCGAGGCG TTGAACCATG CCCAGGAAGT CAACGCCGAC
ATGCTGGTCA TTCTCAACGA CAATGACATG TCGATCTCGC GTAACGTTGG CGGGCTGTCC
AATTATCTGG CCAAGATTCT TTCAAGCCGC ACCTACGCAA GCATGCGCGA GGGCAGCAAG
AAGGTGCTGT CGCGCCTGCC AGGTGCCTGG GAGATTGCCC GTCGCACCGA GGAATACGCC
AAAGGCATGT TGGTGCCCGG CACCCTGTTC GAAGAGCTGG GCTGGAACTA CATCGGCCCG
ATCGATGGCC ACGACCTGCC TACCATGATC GCCACCCTGC GCAACATGCG TGACCTCAAA
GGCCCGCAGT TCCTGCACGT GGTGACCAAG AAGGGCAAAG GCTTCGCTCC GGCCGAGATC
GACCCGATCG GCTACCACGC CATCACCAAG CTCGAGCCTG CCGACAAGCC GGCCGCGCCG
AAGAAGGCCA GCGGGCCGAA GTACTCTGCG GTATTCGGCC AATGGCTGTG CGACATGGCC
GCTGCCGACA ACCGCCTGGT GGGCATCACC CCGGCAATGA AGGAAGGCTC CGACCTGGTT
GCCTTCAGTG AGCGTTACCC CGAGCGCTAC TTCGATGTGG CCATCGCCGA GCAGCATGCC
GTCACGCTGG CGGCGGGCAT GGCCTGCGAA GGCAGCAAGC CGGTGGTCGC GATCTACTCG
ACCTTCCTGC AGCGCGCCTA CGACCAGCTG ATACACGACG TGGCGGTACA GAACCTCGAC
GTCCTGTTCG CCATTGACCG GGCAGGTTTG GTCGGCGAAG ACGGCCCGAC CCACGCGGGC
AGCTATGACC TGTCGTACCT GCGCTGCATC CCGGGCATGC TGGTGATGAC GCCCAGCGAC
GAAAACGAAC TGCGCAAGAT GCTGAGCACC GGCCACCTGT ACAACGGCCC GGCAGCGGTA
CGCTACCCAC GCGGTACCGG CCCCAACGCG CCGATCAGTG GCGACCTGGA ACCGCTGGAA
ATCGGCAAGG GCGTCATCCG TCGTCAGGGC GAAAAGGTCG CTTTGCTGGT GTTTGGCGTG
CAGTTGGCTG AAGCCCTGCA GGTTGCCGAG CAAATCAACG CCACCGTGGT CGACATGCGT
TTCGTCAAGC CGCTGGACGA GGCACTGGTG CTGGAACTGG CAGGCAGTCA TGCGCTGCTG
GTGACCCTCG AAGAGAACGC CATCATGGGC GGCGCGGGGG CTGCTGTGGG TGAGTTCCTG
GCCAGCCAGG CGGTGATCAA GCCGCTGCTG CACCTGGGCC TGCCGGATAT CTACGTCGAG
CACGCCAAGC CTGCGCAGAT GCTGGCTGAA TGTGGGCTGG ATGCGGCCGG CATCGAAGCT
TCGGTGAAGG CCCGCATGGC CAAGCTCGGC CTGTAA
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| Protein sequence | MPTTFQEIPR ERPVTPLLDR ADTPAGLRRL AEADLEHLAD ELRQELLYTV GQTGGHFGAG
LGVIELTIAL HYVFDTPDDR LVWDVGHQAY PHKILTGRRN RMLSLRQKDG IAAFPRRSES
EYDTFGVGHS STSISAALGM AIAARLQNSA RKSIAVIGDG ALTAGMAFEA LNHAQEVNAD
MLVILNDNDM SISRNVGGLS NYLAKILSSR TYASMREGSK KVLSRLPGAW EIARRTEEYA
KGMLVPGTLF EELGWNYIGP IDGHDLPTMI ATLRNMRDLK GPQFLHVVTK KGKGFAPAEI
DPIGYHAITK LEPADKPAAP KKASGPKYSA VFGQWLCDMA AADNRLVGIT PAMKEGSDLV
AFSERYPERY FDVAIAEQHA VTLAAGMACE GSKPVVAIYS TFLQRAYDQL IHDVAVQNLD
VLFAIDRAGL VGEDGPTHAG SYDLSYLRCI PGMLVMTPSD ENELRKMLST GHLYNGPAAV
RYPRGTGPNA PISGDLEPLE IGKGVIRRQG EKVALLVFGV QLAEALQVAE QINATVVDMR
FVKPLDEALV LELAGSHALL VTLEENAIMG GAGAAVGEFL ASQAVIKPLL HLGLPDIYVE
HAKPAQMLAE CGLDAAGIEA SVKARMAKLG L
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