Gene PP_0527 details

Gene Information

• Locus tag: PP_0527
• Symbol: dxs
• ID: 1044303
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas putida KT2440
• Kingdom: Bacteria
• Replicon accession: NC_002947
• Strand: -
• Start bp: 612284
• End bp: 614179
• Gene Length: 1896 bp
• Protein Length: 631 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 637143910
• Product: 1-deoxy-D-xylulose-5-phosphate synthase
• Protein accession: NP_742690
• Protein GI: 161378143
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.384835
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 32
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCCCACGA CGTTTCAAGA GATCCCCCGC GAACGCCCGG TCACGCCGTT GCTCGACCGC 
GCTGACACGC CTGCCGGCCT GCGCCGGTTG GCCGAAGCCG ACCTGGAAAC GCTGGCCGAC 
GAACTGCGCC AGGAATTGCT CTACACCGTT GGGCAGACCG GTGGGCATTT TGGTGCCGGT 
CTGGGCGTCA TCGAGCTGAC CATCGCCCTG CACTACGTGT TCGACACCCC GGACGACCGG 
TTGGTGTGGG ACGTGGGGCA CCAGGCCTAC CCGCACAAGA TCCTCACCGG GCGCCGTAAC 
CGCATGCTCA GCCTGCGCCA GAAGGACGGT ATCGCGGCCT TCCCGCGCCG CAGCGAAAGC 
GAGTACGACA CCTTTGGCGT TGGCCACTCC AGCACCTCGA TCAGCGCCGC GCTGGGCATG 
GCCATTGCTG CCCGCTTGCA GAACAGCGCA CGCAAGTCGA TCGCGGTGAT CGGTGATGGC 
GCGCTGACCG CCGGCATGGC ATTCGAGGCG TTGAACCACG CCCAGGAAGT CAATGCCGAC 
ATGCTGGTGA TCCTCAACGA CAACGACATG TCGATTTCGC GCAATGTCGG CGGCCTGTCC 
AACTACCTGG CCAAGATCCT CTCCAGCCGC ACCTACGCGA GCATGCGCGA AGGCAGCAAG 
AAAGTGCTGT CGCGGTTGCC AGGCGCCTGG GAAATTGCCC GTCGCACCGA GGAATACGCC 
AAGGGCATGC TGGTGCCAGG CACGCTGTTC GAAGAGCTGG GCTGGAACTA CATCGGCCCG 
ATCGACGGCC ACGACCTGCC CACCATGATC GCCACCCTGC GCAACATGCG TGACCTGAAA 
GGCCCGCAGT TCCTGCATGT GGTGACCAAG AAGGGCAAAG GCTTCGCCCC TGCCGAGATT 
GACCCGATCG GCTACCACGC CATCACCAAG CTGGAGCCGG CCGACAAGCC CGCCGCGCCG 
AAGAAAGCCA GCGGCCCGAA ATACTCCGCG GTGTTCGGCC AGTGGCTGTG CGACATGGCC 
GCCGCCGACA ACCGCCTGGT GGGCATTACC CCGGCAATGA AGGAAGGCTC GGACCTGGTC 
GACTTCAGCG AGCGCTACCC TGAGCGCTAC TTTGACGTTG CGATCGCAGA GCAGCATGCC 
GTGACCTTGG CGGCCGGCAT GGCCTGCGAG GGCAGCAAGC CGGTGGTGGC GATCTACTCC 
ACCTTCCTGC AGCGTGCCTA CGACCAGCTG ATCCACGACG TGGCGGTGCA GAACCTCGAC 
GTGCTGTTCG CCATCGATCG CGCCGGCCTG GTCGGCGAGG ACGGCCCGAC CCACGCCGGC 
AGCTACGACC TGTCGTACCT GCGCTGCATC CCGGGCATGC TGGTGATGAC CCCCAGCGAC 
GAGAACGAAC TGCGCAAGAT GCTCAGCACC GGCCACCTGT ACAACGGCCC GGCCGCTGTA 
CGGTACCCGC GTGGTACCGG CCCGAATGCG CCGATCAGCG GAGACCTGCA ACCACTGGAG 
ATCGGCAAGG GCGTGGTCCG CCGCCAGGGC GAAAAAGTGG CCCTGCTGGT GTTCGGCGTA 
CAACTGGCCG AGGCCATGCA AGTGGCCGAA CAGATCAACG CCACGGTGGT CGACATGCGC 
TTCGTCAAGC CGCTGGACGA GGCGCTGGTG CTAGAGCTGG CAGGCAGCCA TGAGCTGCTG 
GTAACCATCG AAGAGAACGC CATCATGGGT GGCGCGGGCG CTGCGGTGGG TGAGTTCCTT 
GCCAGCCAGG CAGTGCTCAA GCCGCTTCTG CACCTGGGGC TGCCGGATAT CTATGTCGAG 
CATGCCAAGC CTGCGCAAAT GCTGGCTGAG TGCGGGCTGG ATGCGGCCGG GATCGAGGCT 
TCGGTGAAGG CCCGCATGGC CAGGCTCGGG CTCTAG 

 

Protein sequence

MPTTFQEIPR ERPVTPLLDR ADTPAGLRRL AEADLETLAD ELRQELLYTV GQTGGHFGAG 
LGVIELTIAL HYVFDTPDDR LVWDVGHQAY PHKILTGRRN RMLSLRQKDG IAAFPRRSES 
EYDTFGVGHS STSISAALGM AIAARLQNSA RKSIAVIGDG ALTAGMAFEA LNHAQEVNAD 
MLVILNDNDM SISRNVGGLS NYLAKILSSR TYASMREGSK KVLSRLPGAW EIARRTEEYA 
KGMLVPGTLF EELGWNYIGP IDGHDLPTMI ATLRNMRDLK GPQFLHVVTK KGKGFAPAEI 
DPIGYHAITK LEPADKPAAP KKASGPKYSA VFGQWLCDMA AADNRLVGIT PAMKEGSDLV 
DFSERYPERY FDVAIAEQHA VTLAAGMACE GSKPVVAIYS TFLQRAYDQL IHDVAVQNLD 
VLFAIDRAGL VGEDGPTHAG SYDLSYLRCI PGMLVMTPSD ENELRKMLST GHLYNGPAAV 
RYPRGTGPNA PISGDLQPLE IGKGVVRRQG EKVALLVFGV QLAEAMQVAE QINATVVDMR 
FVKPLDEALV LELAGSHELL VTIEENAIMG GAGAAVGEFL ASQAVLKPLL HLGLPDIYVE 
HAKPAQMLAE CGLDAAGIEA SVKARMARLG L