| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3776 |
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| Symbol | |
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| ID | 6181249 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | + |
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| Start bp | 747865 |
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| End bp | 749769 |
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| Gene Length | 1905 bp |
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| Protein Length | 634 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641683546 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_001810459 |
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| Protein GI | 172062808 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.495759 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.0534173 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTACGACT TGCTGAAAAC CATCGACGAC CCGGCGGATC TGCGCCGCCT CGATCGTCGC
CAACTCCAAC CGCTCGCGGA TGAACTGCGC GCGTTCGTGC TCGACAGCGT GTCGAAGACG
GGCGGCCATT TGTCGTCCAA CCTCGGGACG GTCGAGCTGA CGATCGCGTT GCACTACGTG
TTCAACACGC CGAACGACCG GATCGTCTGG GACGTGGGGC ACCAGACCTA CCCGCACAAG
ATCCTGACGG GTCGCCGCGA CCAGATGCAT TCGCTGCGCC AGTACGACGG CATCTCGGGT
TTCCCGCGCC GCAGCGAGTC CGAATACGAC ACGTTCGGCA CCGCGCATTC GAGCACGTCG
ATTTCGGCGG CGCTCGGGAT GGCGATCGGC AGCCAGCTGA ACGGCGACGA CCGCTTCTCG
ATCGCGGTGA TCGGCGACGG CGCGATGACG GCCGGCATGG CGTTCGAGGC GATGAACAAC
GCGGGCGTGT CGGAGGATGC GAAACTGCTC GTGATCCTCA ACGACAACGA CATGTCGATT
TCGCCGCCGG TGGGCGCGCT GAACCGCCAT CTCGCGCGCC TGATGTCGGG CCGCTTCTAC
GCGGCCGCGC GTGCCGGCGT CGAGCGCGTG CTGAGCGTGG CGCCGCCGGT GCTCGAACTC
GCGCGCAAGC TCGAGGAGCA CGCGAAGGGC ATGGTCGTGC CGGCTACGCT GTTCGAAGAG
TTCGGCTTCA ACTACATCGG CCCGATCGAC GGTCACGATC TCGATTCGCT GATCCCGACG
CTGCAGAACA TTCGCGAGCT GCGCGGCCCG CAATTCCTGC ACGTGGTGAC GAAGAAAGGC
CAGGGCTACA AGCTCGCCGA AGCGGATCCC GTGCTCTATC ACGGCCCCGG CAAGTTCAAC
CCGGCCGAAG GCATCAAGCC GTCGCCCACG CCCGCGAAGA AAACCTACAC GCAGGTGTTC
GGCGAATGGC TGTGCGACGA AGCCGAGCGC GATTCGCGCG TCGTCGGCAT CACGCCGGCA
ATGCGCGAAG GCTCGGGCAT GGTCGAGTTC GAGAAGCGCT TCAAGGATCG CTACTACGAC
GTCGGTATCG CCGAGCAGCA CGCGGTGACG TTCGCGGGCG GCCTGGCGAC CGAAGGGCTG
AAGCCCGTCG TCGCGATCTA CTCGACGTTC CTGCAGCGTG CGTACGACCA GCTGATCCAC
GACGTCGCGC TGCAGAACCT GCCGGTCGTG TTCGCGATCG ACCGCGCGGG CCTCGTCGGC
GCCGACGGTG CGACGCACGC GGGCGCGTAC GATCTCGCGT TCATGCGCTG CATCCCGAAC
ATGACGATCA TGGCCGCGTC CGACGAGAAC GAGTGCCGCC AGATGCTGCA CACGGCGCTT
CAGCAGCCGA ACCCGACCGC GGTGCGTTAT CCGCGCGGCG CGGGCACGGG CGTGGCGACG
GTGAAGGAGT TCACCGAGAT CCCGCTCGGC AAGGGCGAAG TGCGTCGCCG TACGTCGCAG
CCGGAAGGCA AGCGCGTCGC GATTCTCGCG TTCGGCACGA TGGTCGCGCC GTCGCTCGCG
GCGGGCGAGG AGCTCGACGC GACGGTCGCG AACATGCGCT TCGTGAAGCC GGTCGATGCG
GCGCTCGTGC GTGAACTCGC CGAGACGCAC GACTACCTCG TCACGGTCGA GGAAGGCTGC
GTGATGGGCG GCGCGGGTTC GGCCTGCGTC GAAGCCCTGA TGGAGAGTGG GGTTATCCGG
CCCGTAATAC AATTGGGCCT CCCTGACCAG TTCATCGATC ACGGCGACCC TGCGAAGCTG
CTGGCGCAAT GCGGCCTCGA CGGCGCGGGC ATCGCGAAAT CGATTCGCGA ACGCTTCCTG
AGTCCGGCGG CCGACGTCGC CGATCAGGCG AAGCGCGTCG CGTAA
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| Protein sequence | MYDLLKTIDD PADLRRLDRR QLQPLADELR AFVLDSVSKT GGHLSSNLGT VELTIALHYV
FNTPNDRIVW DVGHQTYPHK ILTGRRDQMH SLRQYDGISG FPRRSESEYD TFGTAHSSTS
ISAALGMAIG SQLNGDDRFS IAVIGDGAMT AGMAFEAMNN AGVSEDAKLL VILNDNDMSI
SPPVGALNRH LARLMSGRFY AAARAGVERV LSVAPPVLEL ARKLEEHAKG MVVPATLFEE
FGFNYIGPID GHDLDSLIPT LQNIRELRGP QFLHVVTKKG QGYKLAEADP VLYHGPGKFN
PAEGIKPSPT PAKKTYTQVF GEWLCDEAER DSRVVGITPA MREGSGMVEF EKRFKDRYYD
VGIAEQHAVT FAGGLATEGL KPVVAIYSTF LQRAYDQLIH DVALQNLPVV FAIDRAGLVG
ADGATHAGAY DLAFMRCIPN MTIMAASDEN ECRQMLHTAL QQPNPTAVRY PRGAGTGVAT
VKEFTEIPLG KGEVRRRTSQ PEGKRVAILA FGTMVAPSLA AGEELDATVA NMRFVKPVDA
ALVRELAETH DYLVTVEEGC VMGGAGSACV EALMESGVIR PVIQLGLPDQ FIDHGDPAKL
LAQCGLDGAG IAKSIRERFL SPAADVADQA KRVA
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