| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1461 |
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| Symbol | |
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| ID | 5199702 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 1608473 |
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| End bp | 1610392 |
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| Gene Length | 1920 bp |
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| Protein Length | 639 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640581009 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_001261963 |
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| Protein GI | 148554381 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.289953 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGACC GTCCTCCAAC GCCGCTTCTC GACACCGTCA GCACGCCCGA AGACCTGCGA
CGCCTCAAGC CGGCGGATTT GCGCCAGCTC GCCGACGAGC TGCGCGCGGA GATGATTTCG
GCGGTGTCGG TGACCGGCGG ACATCTCGGC GCGGGGCTCG GCGTCGTCGA GCTGACGGTG
GCGCTCCATT ATGTCTTCGA CACGCCGCGC GACGTGCTGA TCTGGGACGT CGGCCATCAG
GCCTATCCCC ACAAGATCCT GACCGGCCGG CGCGACCGCA TCCGCACGCT GCGCCAGGGC
GGCGGGCTGT CGGGCTTCAC CAAGCGGTCC GAGAGCGAAT ATGATCCGTT CGGGGCGGCG
CACAGCTCGA CCTCGATCTC GGCCGCGCTC GGCTTCGCCG TCGCCAACAA GCTGGCGAAC
AAGGAAGGCC GCGCGATCGC GGTGATCGGC GACGGCGCGA TGTCGGCGGG CATGGCCTAT
GAGGCGATGA ACAACGCCAA GCAGGCGGGC AACCGGCTGA TCGTCATCCT CAACGACAAC
GACATGTCGA TCGCCCCGCC GGTCGGCGCG CTGTCGGCCT ATCTCGCCAA GATCGTCTCC
TCGCGCCCCT TCCTGTCGAT GCGCGGCTTC GCCAAGCGGG TGGCGCAGAA GCTGCCCCGG
CCGATCCACG ACTTCGCCAA GCGGTCCGAG GAATATGCCC GCGGCATGGC GACCGGCGGC
ACGCTGTTCG AGGAACTGGG CTTCTATTAT GTCGGCCCGG TCGACGGCCA TAATCTCGAC
CATCTGCTGC CGATCCTGGA GAATGTCCGC GACGGCGACC ATGGCCCGAT CCTGATCCAC
GTCGTCACCA ACAAGGGCAA GGGCTATGCC CCGGCCGAGG CGGCGGCCGA CAAATATCAC
GGCGTCCAGA AGTTCGACGT CGTCTCCGGG GTGCAGGCCA AGGCGCCGCC GGGCCCGCCC
AGCTACACCG GCGTCTTCGC CGACGCCCTG GTCGCCGAGG CGAAGCGCGA CGACCGGATC
TGCGCGATCA CCGCGGCGAT GCCCTCGGGC ACCGGCCTCG ACAAATTCGG CAAGGCCTTC
CCGGAGCGCA GCTTCGACGT CGGCATCGCC GAGCAGCATG CGGTGACCTT CGCCGCCGGC
CTCGCCGCGC AGGGCTATCG CCCCTTCTGC GCGATCTACT CGACCTTCCT GCAGCGCGCC
TATGACCAGG TCGTCCACGA CGTGGCGATC CAGAACCTGC CGGTGCGCTT CGCGATCGAC
CGCGCCGGCC TGGTCGGCGC CGACGGCTCG ACCCATGCTG GCAGCTTCGA CATCACCTAT
CTGGCGACGC TGCCGAACAT GGTGGTGATG GCGGCGGCCG ACGAGGCGGA GCTGGTCCAC
ATGGTCCACA CCGCCGCCGT CCACGACAGC GGCCCGATCG CGCTGCGCTA TCCGCGCGGC
AACGGCGTCG GGGTCGCGCT GCCCGCCGCG CCCGAGCGTC TCGCGATCGG CAAGGGCCGG
ATCGTGCGCG AGGGCAAGAC GGTCGCGCTC CTGTCGCTCG GCACCCGGCT GGGCGAGGCG
CTGCGCGCCG CCGATCAGCT CGATGCGCTG GGCCTTTCGA CGACGGTCGC CGACCTGCGC
TTCGCCAAGC CGCTCGACGA GGCGATGATC CAGACGCTGC TGACCAGCCA TGAGGTGGCG
GTGACGATCG AGGAGGGCGC GATCGGCGGC CTCGGCGCGC ATGTCCTGAC CCTCGCGTCG
GACCTCGGCC TGATCGACGG CGGCCTGAAG CTGCGGACGA TGCGCCTGCC CGACGCCTTC
CAGGAGCATG ACAAGCCCGA GAAGCAATAT GCCGAGGCGG GCCTCGATGC CGAATCGATC
GTCGCGACGG TGCTCGCGGC GCTGCACCGG AACAGCAAGG GCCTCGAAGA GAGCGCCTGA
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| Protein sequence | MNDRPPTPLL DTVSTPEDLR RLKPADLRQL ADELRAEMIS AVSVTGGHLG AGLGVVELTV
ALHYVFDTPR DVLIWDVGHQ AYPHKILTGR RDRIRTLRQG GGLSGFTKRS ESEYDPFGAA
HSSTSISAAL GFAVANKLAN KEGRAIAVIG DGAMSAGMAY EAMNNAKQAG NRLIVILNDN
DMSIAPPVGA LSAYLAKIVS SRPFLSMRGF AKRVAQKLPR PIHDFAKRSE EYARGMATGG
TLFEELGFYY VGPVDGHNLD HLLPILENVR DGDHGPILIH VVTNKGKGYA PAEAAADKYH
GVQKFDVVSG VQAKAPPGPP SYTGVFADAL VAEAKRDDRI CAITAAMPSG TGLDKFGKAF
PERSFDVGIA EQHAVTFAAG LAAQGYRPFC AIYSTFLQRA YDQVVHDVAI QNLPVRFAID
RAGLVGADGS THAGSFDITY LATLPNMVVM AAADEAELVH MVHTAAVHDS GPIALRYPRG
NGVGVALPAA PERLAIGKGR IVREGKTVAL LSLGTRLGEA LRAADQLDAL GLSTTVADLR
FAKPLDEAMI QTLLTSHEVA VTIEEGAIGG LGAHVLTLAS DLGLIDGGLK LRTMRLPDAF
QEHDKPEKQY AEAGLDAESI VATVLAALHR NSKGLEESA
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