| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0781 |
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| Symbol | |
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| ID | 5453610 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 846432 |
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| End bp | 848384 |
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| Gene Length | 1953 bp |
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| Protein Length | 650 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640876350 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_001412061 |
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| Protein GI | 154251237 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.128474 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 0.356919 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTTGAACA GCAAACCCCC GACCCCTTTG CTTGACCGGG TGACCGTCCC GGCAGATTTG
CGCGCGCTTG GTGAAGGCGA TCTGCGGCAG CTTGCCGAGG AATTGCGCGC GGAGATGGTC
GACGCCGTCT CGCAGACGGG TGGCCATCTC GGTGCGGGGC TTGGTGTTGT CGAACTGACG
GTCGCTCTCC ACTACGTGTT CAACACGCCG GAAGACCGCA TCATCTGGGA TGTCGGCCAT
CAGGCTTATC CCCACAAGAT ACTCACCGGC CGCCGCGACC GCATCCGCAC GCTGCGACAG
GGCGACGGAC TGTCGGGTTT TACCAAGCGC GCTGAAAGCG AATACGATCC GTTCGGCGCC
GCGCATTCCT CCACCTCGAT ATCCTCGGGC CTCGGGATGG CCGTCGCCCG CGACCTCAAG
GGCGGCACCA ACAATGTCGT GGCCGTGATC GGCGATGGTG CGATGTCGGC GGGCATGGCC
TATGAGGCGA TGAACAACGC CGGCTCGATG AACAGCCGCC TCATCATCAT CCTGAACGAC
AACGACATGT CGATCGCGCC GCCTGTCGGC GCCATGAGCG CCTATCTCGC GCGCCTTCTG
TCCGGCGGCG CCTACCGCTC CATGCGTCAT CTCGCCAAGC AACTCGCGCA GCTCCTGCCC
AAACGGCTGG AAGAAAGCGC CCGCCGCGCC GAGGAATATG CGCGCGGCAT GGCGACCGGC
GGCACGCTCT TCGAGGAGCT AGGCCTCTAC TATGTCGGCC CGATAGACGG GCATAATTTC
GATCATCTGC TGCCCGTGCT GAAGAATGTG CGTGACGCCG GCGAAGGGCC GATCCTCGTT
CACGTCGTGA CGCAGAAGGG CAAGGGTTAT GCGCCTGCCG AAGCGGCGGA GGACAAATAC
CACGGCGTTT CAAAATTCGA TGTTGTCACC GGCACGCAAG CGAAGGCGCA GGCAAACGCG
CCGAGCTACA CCAAGGTCTT CGCCGAAAGC CTGATCGCGC ATGCCGAAGA GGACGACAAG
ATCGTCGCCA TCACGGCGGC CATGCCGGGC GGCACGGGCC TCGATCTTTT TGCGCAGCGT
TTTCCGGGGC GTACCTTCGA TGTCGGCATT GCCGAGCAAC ATGCCGTGAC TTTCGCTGCG
GGCCTCGCAA CCGAAGGCTT CAAACCCTTC GCCACCATCT ACTCGACATT CCTGCAGCGC
GCCTACGACC AGGTCGTGCA TGACGTGGCG ATCCAGCGTC TCCCCGTCCG TTTCGCCATC
GACCGCGCTG GGCTCGTCGG CGCCGACGGA CCGACGCATG CCGGTTCGTT CGACGTAACC
TATCTTGCCT GCCTGCCGGG CTTCGTCGTC ATGGCGGCGG CGGACGAGGT CGAATTGAAA
CACATGGTGG CGACGGCCGT CGCCATCGAC GACCGTCCCT CCTCGTTGCG TTATCCCCGG
GGCGAAGGCG TCGGCATCGA AATGCCGGCC ATCGGCACAC CTCTCGAAAT CGGCAAGGGC
CGCATCTTGC GTCAGGGCAC CAAGGTGGCG ATCCTCTCGC TTGGCACGCG TCTCGCCGAG
GCGCTGAAAG CGGCCGAACA GCTCGGCGCG CTCGGTCTTT CGACAACAGT CGTCGATGCG
CGCTTCGCAA AGCCGCTGGA CGAAGACCTG ATCGCGCGTC TCGCCCGCGA GCATGAGCTG
CTGATTACCG TGGAAGAGGG CTCCATCGGC GGCTTCGGCA GCCATGTGCT TGATTTCCTC
GCCCATTCCG GCGCGCTCGA TCGTGGCCTG AAAGTCCGGC CCATGGCGCT GCCGGACATT
TTCATTGACC AAGACAAGCC GGAAAAAATG TACGACATCG CCGGGCTGAA CGCCGCGCAG
ATCGTGGAGA CCGCTCTCTC CGTGCTGGGG CAAGAACGGC AGATCGCTGA CTTTCGGCAG
ATGACGCCGC AGCCGCTGCC GAAACTCGTC TGA
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| Protein sequence | MLNSKPPTPL LDRVTVPADL RALGEGDLRQ LAEELRAEMV DAVSQTGGHL GAGLGVVELT
VALHYVFNTP EDRIIWDVGH QAYPHKILTG RRDRIRTLRQ GDGLSGFTKR AESEYDPFGA
AHSSTSISSG LGMAVARDLK GGTNNVVAVI GDGAMSAGMA YEAMNNAGSM NSRLIIILND
NDMSIAPPVG AMSAYLARLL SGGAYRSMRH LAKQLAQLLP KRLEESARRA EEYARGMATG
GTLFEELGLY YVGPIDGHNF DHLLPVLKNV RDAGEGPILV HVVTQKGKGY APAEAAEDKY
HGVSKFDVVT GTQAKAQANA PSYTKVFAES LIAHAEEDDK IVAITAAMPG GTGLDLFAQR
FPGRTFDVGI AEQHAVTFAA GLATEGFKPF ATIYSTFLQR AYDQVVHDVA IQRLPVRFAI
DRAGLVGADG PTHAGSFDVT YLACLPGFVV MAAADEVELK HMVATAVAID DRPSSLRYPR
GEGVGIEMPA IGTPLEIGKG RILRQGTKVA ILSLGTRLAE ALKAAEQLGA LGLSTTVVDA
RFAKPLDEDL IARLAREHEL LITVEEGSIG GFGSHVLDFL AHSGALDRGL KVRPMALPDI
FIDQDKPEKM YDIAGLNAAQ IVETALSVLG QERQIADFRQ MTPQPLPKLV
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