Gene Avi_0997 details

Gene Information

• Locus tag: Avi_0997
• Symbol: dxs
• ID: 7387095
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: -
• Start bp: 848685
• End bp: 850604
• Gene Length: 1920 bp
• Protein Length: 639 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 643650503
• Product: 1-deoxy-D-xylulose-5-phosphate synthase
• Protein accession: YP_002548711
• Protein GI: 222147754
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGACATCGA AGCCAAACAC GCCGTTGCTG GATCAGGTCG TGTTTCCGTC CGACCTTCGC 
AAGATCGAAG ATAAGGACAT GCCCCAAGTG GCGCGTGAAC TGCGCGACGA GATGATCGAT 
GCCGTGTCGG TGACGGGCGG ACATCTGGGC GCCGGGCTTG GCGTGGTGGA ACTGACGCTC 
GCCATCCACA AGGTTTTCAA CACCCCGGAA GACCGGCTGA TCTTTGATGT CGGACACCAA 
TGCTATCCGC ACAAGATCCT GACCGGGCGG CGAGAGCGCA TCCGCACGCT GCGCCAGGAA 
CATGGGCTTT CGGGCTTCAC CAAACGGGCT GAGAGCGAAT ACGATCCGTT CGGCGCAGCC 
CATTCCTCCA CGTCCATTTC GGCAGGCCTT GGCATGGCCG TGGCAGCCGA GCTTGGCCAG 
ACCGACCGCA AGGTCATCGC TGTGATCGGC GACGGGGCGA TGTCGGCGGG CATGGCATTT 
GAGGCTCTGA ACAACGCCGG CGCGCTGGAC GCGCGGCTGA TCGTCATTCT CAACGACAAT 
GACATGTCGA TTGCCCCACC AACCGGCGCG ATGAGCGCCT ATCTGGCGCG GCTTGCCTCC 
GGGCGCACCT ATATGGGTAT GCGCGAGATC GGCAAAAAAC TGACCGCCTA TCTCGGCAAG 
AATATCGACC GGGCCATCAC CCGCGCCGTC GAACATGCGC GTGGCTATGT AACCGGCGGC 
ACGATGTTTG AGGAAATGGG CTTTTACCAT ATCGGCCCGA TTGACGGCCA TTCCTTTGAT 
CATCTCCTGC CGGTGCTGCG CAATGTGCGC GACAACGCCA AGGGGCCGGT GCTGATCCAT 
GTGGTGACCC AGAAGGGCAA GGGTTATGCG CCCGCCGAGG CCGCCGCCGA CAAATACCAC 
GGCGTCAACA CCTTCGATGT CATCACCGGT ACCCAGGCCA AGGCCAAGCC GAATGCGCCG 
AGCTATACCG CCGTGTTTGC CGACGCGCTG GTGGAAGAAG CCCGCCTTGA CGACAAGATC 
GTCGGCATTA CCGCCGCCAT GCCATCAGGC ACCGGGCTTG ATAAGCTACA AAACCTGTTC 
CCGGAACGGA CCTTCGATGT CGGCATTGCC GAACAGCATG CCGTGACCTT TGCCGCTGGC 
CTTGCCGCCG AGGGCTACAA GCCGTTCTGC GCGCTCTATT CGACCTTCCT GCAACGCGGC 
TACGATCAGG TCGTGCATGA CGTCGCCATC CAAGGCTTGC CCGTGCGTTT TCCCATCGAC 
CGCGCCGGTT TCGTCGGTGC CGATGGGCCA ACCCATGCCG GATCGTTCGA TACCGGCTTT 
CTCGCCAGCC TGCCCGGTTT CGTGGTGATG GCGGCGGCTG ATGAAGCCGA ACTGAAGCAT 
ATGGTGCGCA CCGCCGCCGC CTATGATGAG GGTCCGATTT CCTTCCGCTA TCCACGCGGC 
GAAGGCGTTG GCGTGCAGAT GCCGGAGCGC GGCGAGATTT TGCCAATCGG CAAGGGCCGG 
ATCATCAAGG AAGGCTCGAA AGTGGCGCTG CTGTCCTTCG GGACGCGGCT GGCTGAATGT 
CTTGTCGCGG CAGAAGATCT CGATGCCGCC GGCCTGCCGA CCACGGTTGC CGATGCCCGG 
TTTGCCAAGC CGCTCGATCT CGACCTGATC CGCCAGCTTG CCCGCCACCA TGCCGTGCTG 
ATCACGGTCG AGGAAGGTGC GGTCGGCGGT TTCGGATCTC AGGTCCTGCA TATGCTGGCC 
AATGAGGGCC TGCTCGACCA CGGCCTCAAA GTCCGGAGCC TGGTTCTGCC GGATCTGTGG 
ATGGATCAGG CCAAGCCTGA CGTCATGTAT GAAAAGGCAG GCCTCGACGC CAAGGGCATT 
GTTTCAACGG TGTTCACAGC GCTGTCGCGC GATGCTTTGG CCCAAGACAG CTTGGCGTAA 

 

Protein sequence

MTSKPNTPLL DQVVFPSDLR KIEDKDMPQV ARELRDEMID AVSVTGGHLG AGLGVVELTL 
AIHKVFNTPE DRLIFDVGHQ CYPHKILTGR RERIRTLRQE HGLSGFTKRA ESEYDPFGAA 
HSSTSISAGL GMAVAAELGQ TDRKVIAVIG DGAMSAGMAF EALNNAGALD ARLIVILNDN 
DMSIAPPTGA MSAYLARLAS GRTYMGMREI GKKLTAYLGK NIDRAITRAV EHARGYVTGG 
TMFEEMGFYH IGPIDGHSFD HLLPVLRNVR DNAKGPVLIH VVTQKGKGYA PAEAAADKYH 
GVNTFDVITG TQAKAKPNAP SYTAVFADAL VEEARLDDKI VGITAAMPSG TGLDKLQNLF 
PERTFDVGIA EQHAVTFAAG LAAEGYKPFC ALYSTFLQRG YDQVVHDVAI QGLPVRFPID 
RAGFVGADGP THAGSFDTGF LASLPGFVVM AAADEAELKH MVRTAAAYDE GPISFRYPRG 
EGVGVQMPER GEILPIGKGR IIKEGSKVAL LSFGTRLAEC LVAAEDLDAA GLPTTVADAR 
FAKPLDLDLI RQLARHHAVL ITVEEGAVGG FGSQVLHMLA NEGLLDHGLK VRSLVLPDLW 
MDQAKPDVMY EKAGLDAKGI VSTVFTALSR DALAQDSLA