Gene RSP_0254 details

Gene Information

• Locus tag: RSP_0254
• Symbol: dxsA
• ID: 3719396
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodobacter sphaeroides 2.4.1
• Kingdom: Bacteria
• Replicon accession: NC_007493
• Strand: -
• Start bp: 1978340
• End bp: 1980286
• Gene Length: 1947 bp
• Protein Length: 648 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 640071462
• Product: 1-deoxy-D-xylulose-5-phosphate synthase
• Protein accession: YP_353327
• Protein GI: 77463823
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCAATC CCACCCCGCG ACCCGAAACC CCGCTTTTGG ATCGCGTCTG CTGCCCGGCC 
GACATGAAGG CGCTGAGTGA CGCCGAACTG GAGCGGCTGG CCGACGAAGT GCGTTCCGAG 
GTGATTTCGG TCGTTGCCGA GACGGGAGGA CATCTGGGGT CCTCGCTGGG GGTGGTTGAG 
CTGACTGTCG CGCTGCATGC GGTCTTCAAC ACGCCCACCG ACAAGCTCGT CTGGGACGTG 
GGCCACCAGT GCTACCCCCA CAAGATCCTC ACCGGCCGGC GCGAGCAGAT GCGCACCCTG 
CGCCAGAAGG GCGGCCTCTC GGGCTTCACC AAGCGCTCGG AATCCGCCTA CGACCCGTTC 
GGCGCGGCTC ATTCCTCGAC CTCGATCTCG GCCGCGCTCG GCTTTGCCAT GGGTCGCGAG 
CTGGGCCAGC CCGTGGGCGA CACGATCGCC GTGATCGGCG ACGGCTCCAT CACCGCGGGC 
ATGGCCTACG AGGCACTGAA CCACGCGGGC CATCTGAACA AGCGCCTGTT CGTGATCCTG 
AACGACAATG ACATGAGCAT CGCGCCGCCC GTGGGGGCGC TTGCGCGCTA TCTCGTGAAT 
CTCTCCTCGA AGGCGCCCTT CGCCACGCTG CGCGCGGCCG CCGACGGGCT CGAGGCCTCG 
CTGCCGGGGC CGCTCCGCGA CGGGGCGCGC CGGGCGCGCC AGCTCGTGAC CGGGATGCCG 
GGCGGGGGCA CGCTCTTCGA GGAGCTGGGC TTCACCTATG TCGGCCCCAT CGACGGCCAC 
GACATGGAGG CGCTCCTCCA GACGCTGCGC GCGGCGCGGG CCCGGACCAC GGGGCCGGTG 
CTCATCCATG TGGTCACGAA GAAGGGCAAG GGTTACGCCC CCGCCGAGAA TGCCCCCGAC 
AAGTATCACG GGGTGAACAA GTTCGACCCC GTCACGGGCG AGCAGAAGAA GTCGGTGGCC 
AACGCGCCGA ACTACACCAA GGTCTTCGGC TCCACCCTGA CCGAGGAGGC CGCGCGCGAT 
CCGCGCATCG TGGCGATCAC CGCCGCTATG CCCTCGGGCA CCGGCGTCGA CATCATGCAG 
AAGCGTTTCC CGAACCGCGT CTTCGACGTG GGCATCGCCG AGCAGCATGC CGTGACCTTC 
GCGGCCGGCC TCGCCGGGGC CGGGATGAAG CCCTTCTGCG CGATCTATTC CTCGTTCCTG 
CAACGGGGTT ACGACCAGAT CGCCCATGAC GTGGCGCTGC AGAACCTTCC CGTCCGCTTC 
GTGATCGACC GGGCGGGGCT CGTGGGGGCC GATGGCGCGA CCCATGCGGG GGCCTTCGAC 
GTTGGCTTCA TCACTTCGCT GCCCAACATG ACCGTGATGG CCGCGGCCGA CGAGGCCGAG 
CTCATCCACA TGATCGCCAC CGCCGTGGCC TTCGACGAGG GCCCCATCGC CTTCCGCTTC 
CCGCGGGGCG AGGGGGTGGG CGTCGAGATG CCCGAGCGCG GGACGGTGCT GGAGCCCGGC 
CGGGGCCGCG TGGTGCGCGA AGGGACGGAT GTCGCGATCC TCTCCTTCGG CGCGCATCTG 
CACGAGGCCT TGCAGGCGGC GAAACTTCTC GAGGCCGAGG GGGTGAGCGT GACCGTGGCC 
GACGCCCGCT TCTCGCGCCC GCTCGACACG GGGCTCATCG ACCAGCTCGT GCGCCATCAC 
GCGGCGCTGG TAACGGTGGA GCAGGGGGCC ATGGGCGGCT TCGGCGCCCA TGTCATGCAC 
TATCTCGCCA ATTCCGGCGG CTTCGACGGG GGCCTCGCGC TCCGGGTCAT GACGCTGCCC 
GACCGCTTCA TCGAGCAGGC GAGCCCCGAG GACATGTATG CCGATGCGGG GCTGCGGGCC 
GAGGATATCG CGGCCACCGC GCGGGGCGCG CTCGCCCGGG GGCGCGTGAT GCCGCTCCGG 
CAGACGGCAA AGCCGCGGGC GGTCTGA 

 

Protein sequence

MTNPTPRPET PLLDRVCCPA DMKALSDAEL ERLADEVRSE VISVVAETGG HLGSSLGVVE 
LTVALHAVFN TPTDKLVWDV GHQCYPHKIL TGRREQMRTL RQKGGLSGFT KRSESAYDPF 
GAAHSSTSIS AALGFAMGRE LGQPVGDTIA VIGDGSITAG MAYEALNHAG HLNKRLFVIL 
NDNDMSIAPP VGALARYLVN LSSKAPFATL RAAADGLEAS LPGPLRDGAR RARQLVTGMP 
GGGTLFEELG FTYVGPIDGH DMEALLQTLR AARARTTGPV LIHVVTKKGK GYAPAENAPD 
KYHGVNKFDP VTGEQKKSVA NAPNYTKVFG STLTEEAARD PRIVAITAAM PSGTGVDIMQ 
KRFPNRVFDV GIAEQHAVTF AAGLAGAGMK PFCAIYSSFL QRGYDQIAHD VALQNLPVRF 
VIDRAGLVGA DGATHAGAFD VGFITSLPNM TVMAAADEAE LIHMIATAVA FDEGPIAFRF 
PRGEGVGVEM PERGTVLEPG RGRVVREGTD VAILSFGAHL HEALQAAKLL EAEGVSVTVA 
DARFSRPLDT GLIDQLVRHH AALVTVEQGA MGGFGAHVMH YLANSGGFDG GLALRVMTLP 
DRFIEQASPE DMYADAGLRA EDIAATARGA LARGRVMPLR QTAKPRAV