More than 300 homologs were found in PanDaTox collection
for query gene Smed_0492 on replicon NC_009636
Organism: Sinorhizobium medicae WSM419



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011666  Msil_0717  1-deoxy-D-xylulose-5-phosphate synthase  66.88 
 
 
642 aa  834    Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_010725  Mpop_1830  1-deoxy-D-xylulose-5-phosphate synthase  66.1 
 
 
660 aa  842    Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_1897  1-deoxy-D-xylulose-5-phosphate synthase  60.99 
 
 
648 aa  773    Rhodobacter sphaeroides ATCC 17029  Bacteria  decreased coverage  0.00653181  normal  0.596808 
 
 
-
 
NC_009439  Pmen_3844  1-deoxy-D-xylulose-5-phosphate synthase  53.71 
 
 
631 aa  642    Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_011365  Gdia_0087  1-deoxy-D-xylulose-5-phosphate synthase  62.19 
 
 
667 aa  798    Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.0603338  normal  0.251774 
 
 
-
 
NC_010511  M446_6391  1-deoxy-D-xylulose-5-phosphate synthase  66.61 
 
 
663 aa  827    Methylobacterium sp. 4-46  Bacteria  normal  normal  0.144066 
 
 
-
 
NC_011757  Mchl_4678  1-deoxy-D-xylulose-5-phosphate synthase  65.47 
 
 
658 aa  828    Methylobacterium chloromethanicum CM4  Bacteria  normal  0.942989  normal  0.352645 
 
 
-
 
NC_004310  BR0436  1-deoxy-D-xylulose-5-phosphate synthase  76.28 
 
 
643 aa  969    Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_3459  1-deoxy-D-xylulose-5-phosphate synthase  66.41 
 
 
656 aa  836    Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.841301 
 
 
-
 
NC_010511  M446_6352  1-deoxy-D-xylulose-5-phosphate synthase  66.93 
 
 
654 aa  837    Methylobacterium sp. 4-46  Bacteria  normal  0.540512  normal  0.249842 
 
 
-
 
NC_009428  Rsph17025_2792  1-deoxy-D-xylulose-5-phosphate synthase  64 
 
 
637 aa  811    Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.250893  normal 
 
 
-
 
NC_009428  Rsph17025_2027  1-deoxy-D-xylulose-5-phosphate synthase  60.99 
 
 
648 aa  773    Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0722813  normal  0.799434 
 
 
-
 
NC_008783  BARBAKC583_0400  1-deoxy-D-xylulose-5-phosphate synthase  69.81 
 
 
638 aa  893    Bartonella bacilliformis KC583  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_0997  1-deoxy-D-xylulose-5-phosphate synthase  86.1 
 
 
639 aa  1106    Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_0633  1-deoxy-D-xylulose-5-phosphate synthase  70.02 
 
 
666 aa  889    Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.300424  normal 
 
 
-
 
NC_009484  Acry_1833  1-deoxy-D-xylulose-5-phosphate synthase  66.45 
 
 
647 aa  839    Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_0254  1-deoxy-D-xylulose-5-phosphate synthase  60.83 
 
 
648 aa  772    Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_1134  1-deoxy-D-xylulose-5-phosphate synthase  63.68 
 
 
637 aa  806    Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.310959  n/a   
 
 
-
 
NC_009511  Swit_1461  1-deoxy-D-xylulose-5-phosphate synthase  69.07 
 
 
639 aa  865    Sphingomonas wittichii RW1  Bacteria  normal  0.289953  normal 
 
 
-
 
NC_010725  Mpop_4826  1-deoxy-D-xylulose-5-phosphate synthase  65.78 
 
 
658 aa  835    Methylobacterium populi BJ001  Bacteria  normal  0.459633  normal  0.588192 
 
 
-
 
NC_009505  BOV_0443  1-deoxy-D-xylulose-5-phosphate synthase  76.6 
 
 
643 aa  972    Brucella ovis ATCC 25840  Bacteria  normal  0.580074  n/a   
 
 
-
 
NC_007614  Nmul_A0236  1-deoxy-D-xylulose-5-phosphate synthase  54.85 
 
 
614 aa  650    Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.947213  n/a   
 
 
-
 
NC_007643  Rru_A0054  1-deoxy-D-xylulose-5-phosphate synthase  65.97 
 
 
645 aa  843    Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A2619  1-deoxy-D-xylulose-5-phosphate synthase  66.61 
 
 
645 aa  850    Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0887721  n/a   
 
 
-
 
NC_011369  Rleg2_0564  1-deoxy-D-xylulose-5-phosphate synthase  86.97 
 
 
638 aa  1143    Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_2479  1-deoxy-D-xylulose-5-phosphate synthase  69.44 
 
 
641 aa  895    Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_4460  1-deoxy-D-xylulose-5-phosphate synthase  68.84 
 
 
638 aa  885    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007794  Saro_0161  1-deoxy-D-xylulose-5-phosphate synthase  69.39 
 
 
640 aa  870    Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_0088  1-deoxy-D-xylulose-5-phosphate synthase  63.75 
 
 
639 aa  808    Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_0170  1-deoxy-D-xylulose-5-phosphate synthase  60.32 
 
 
636 aa  759    Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_011365  Gdia_1289  1-deoxy-D-xylulose-5-phosphate synthase  61.74 
 
 
704 aa  796    Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_1149  1-deoxy-D-xylulose-5-phosphate synthase  68.48 
 
 
641 aa  879    Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_2133  1-deoxy-D-xylulose-5-phosphate synthase  53.62 
 
 
614 aa  639    Methylobacillus flagellatus KT  Bacteria  hitchhiker  0.000520629  normal 
 
 
-
 
NC_011757  Mchl_2215  1-deoxy-D-xylulose-5-phosphate synthase  65.47 
 
 
660 aa  829    Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_4305  1-deoxy-D-xylulose-5-phosphate synthase  69.32 
 
 
638 aa  890    Rhodopseudomonas palustris BisB5  Bacteria  normal  0.302176  normal  0.192366 
 
 
-
 
NC_007964  Nham_0778  1-deoxy-D-xylulose-5-phosphate synthase  69.81 
 
 
668 aa  882    Nitrobacter hamburgensis X14  Bacteria  normal  0.324929  n/a   
 
 
-
 
NC_009667  Oant_0547  1-deoxy-D-xylulose-5-phosphate synthase  75.6 
 
 
638 aa  986    Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_1811  1-deoxy-D-xylulose-5-phosphate synthase  69.75 
 
 
642 aa  871    Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.776218 
 
 
-
 
NC_012850  Rleg_0607  1-deoxy-D-xylulose-5-phosphate synthase  87.28 
 
 
638 aa  1146    Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.215846 
 
 
-
 
NC_008044  TM1040_2920  1-deoxy-D-xylulose-5-phosphate synthase  64.87 
 
 
645 aa  817    Ruegeria sp. TM1040  Bacteria  normal  normal  0.922761 
 
 
-
 
NC_008048  Sala_2354  1-deoxy-D-xylulose-5-phosphate synthase  67.31 
 
 
642 aa  853    Sphingopyxis alaskensis RB2256  Bacteria  normal  0.533243  normal  0.0503027 
 
 
-
 
NC_008254  Meso_0735  1-deoxy-D-xylulose-5-phosphate synthase  80.83 
 
 
650 aa  1044    Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_4309  1-deoxy-D-xylulose-5-phosphate synthase  65.47 
 
 
658 aa  829    Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_2795  1-deoxy-D-xylulose-5-phosphate synthase  63.52 
 
 
637 aa  807    Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_7141  1-deoxy-D-xylulose-5-phosphate synthase  67.14 
 
 
654 aa  840    Methylobacterium nodulans ORS 2060  Bacteria  normal  0.994117  n/a   
 
 
-
 
NC_009356  OSTLU_48774  1-deoxy-D-xylulose-5-phosphate synthase plastid precursor  55.23 
 
 
746 aa  722    Ostreococcus lucimarinus CCE9901  Eukaryota  normal  0.284634  n/a   
 
 
-
 
NC_011894  Mnod_6796  1-deoxy-D-xylulose-5-phosphate synthase  67.08 
 
 
665 aa  838    Methylobacterium nodulans ORS 2060  Bacteria  normal  0.180655  n/a   
 
 
-
 
NC_009719  Plav_0781  1-deoxy-D-xylulose-5-phosphate synthase  72.86 
 
 
650 aa  937    Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.128474  normal  0.356919 
 
 
-
 
NC_010505  Mrad2831_3992  1-deoxy-D-xylulose-5-phosphate synthase  66.82 
 
 
664 aa  836    Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.0302614 
 
 
-
 
NC_009952  Dshi_3294  1-deoxy-D-xylulose-5-phosphate synthase  65.5 
 
 
643 aa  820    Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_008347  Mmar10_0849  1-deoxy-D-xylulose-5-phosphate synthase  67.09 
 
 
643 aa  838    Maricaulis maris MCS10  Bacteria  normal  normal  0.313067 
 
 
-
 
NC_010172  Mext_1939  1-deoxy-D-xylulose-5-phosphate synthase  65.47 
 
 
657 aa  829    Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_1048  1-deoxy-D-xylulose-5-phosphate synthase  52.32 
 
 
622 aa  635    Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_1022  1-deoxy-D-xylulose-5-phosphate synthase  69.76 
 
 
641 aa  884    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.221512  n/a   
 
 
-
 
NC_009636  Smed_0492  1-deoxy-D-xylulose-5-phosphate synthase  100 
 
 
637 aa  1280    Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_3314  1-deoxy-D-xylulose-5-phosphate synthase  64.21 
 
 
638 aa  804    Caulobacter sp. K31  Bacteria  normal  normal  0.855639 
 
 
-
 
NC_008686  Pden_0400  1-deoxy-D-xylulose-5-phosphate synthase  67.84 
 
 
640 aa  841    Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.382014 
 
 
-
 
NC_009952  Dshi_3526  1-deoxy-D-xylulose-5-phosphate synthase  62.82 
 
 
658 aa  794    Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_4733  1-deoxy-D-xylulose-5-phosphate synthase  70.69 
 
 
643 aa  897    Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_0527  1-deoxy-D-xylulose-5-phosphate synthase  52.56 
 
 
631 aa  629  1e-179  Pseudomonas putida KT2440  Bacteria  normal  0.384835  normal 
 
 
-
 
NC_007298  Daro_3061  1-deoxy-D-xylulose-5-phosphate synthase  52.73 
 
 
618 aa  629  1e-179  Dechloromonas aromatica RCB  Bacteria  hitchhiker  0.004887  hitchhiker  0.00000111191 
 
 
-
 
NC_009656  PSPA7_1057  1-deoxy-D-xylulose-5-phosphate synthase  53.98 
 
 
627 aa  629  1e-179  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_0572  1-deoxy-D-xylulose-5-phosphate synthase  52.4 
 
 
631 aa  629  1e-179  Pseudomonas putida GB-1  Bacteria  normal  normal  0.888062 
 
 
-
 
NC_010501  PputW619_0579  1-deoxy-D-xylulose-5-phosphate synthase  52.56 
 
 
631 aa  628  1e-179  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_0561  1-deoxy-D-xylulose-5-phosphate synthase  52.56 
 
 
631 aa  629  1e-179  Pseudomonas putida F1  Bacteria  normal  normal  0.763827 
 
 
-
 
NC_007492  Pfl01_5007  1-deoxy-D-xylulose-5-phosphate synthase  53.35 
 
 
632 aa  628  1e-178  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_0604  1-deoxy-D-xylulose-5-phosphate synthase  52.32 
 
 
630 aa  622  1e-177  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.390731 
 
 
-
 
NC_004578  PSPTO_0698  deoxyxylulose-5-phosphate synthase  52.24 
 
 
631 aa  618  1e-176  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B2211  1-deoxy-D-xylulose-5-phosphate synthase  51.92 
 
 
634 aa  619  1e-176  Burkholderia sp. 383  Bacteria  normal  0.41875  normal 
 
 
-
 
NC_002939  GSU0686  1-deoxy-D-xylulose-5-phosphate synthase  53.65 
 
 
637 aa  616  1e-175  Geobacter sulfurreducens PCA  Bacteria  normal  0.351489  n/a   
 
 
-
 
NC_008391  Bamb_3250  1-deoxy-D-xylulose-5-phosphate synthase  52.08 
 
 
646 aa  616  1e-175  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.0235548 
 
 
-
 
NC_008463  PA14_11550  1-deoxy-D-xylulose-5-phosphate synthase  53.66 
 
 
627 aa  617  1e-175  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_3648  1-deoxy-D-xylulose-5-phosphate synthase  51.92 
 
 
634 aa  612  9.999999999999999e-175  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_6781  1-deoxy-D-xylulose-5-phosphate synthase  51.71 
 
 
653 aa  613  9.999999999999999e-175  Burkholderia phytofirmans PsJN  Bacteria  normal  0.772471  hitchhiker  0.0000939262 
 
 
-
 
NC_010524  Lcho_3373  deoxyxylulose-5-phosphate synthase  52.84 
 
 
639 aa  613  9.999999999999999e-175  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_010552  BamMC406_3776  1-deoxy-D-xylulose-5-phosphate synthase  52.08 
 
 
634 aa  615  9.999999999999999e-175  Burkholderia ambifaria MC40-6  Bacteria  normal  0.495759  normal  0.0534173 
 
 
-
 
NC_008752  Aave_2015  1-deoxy-D-xylulose-5-phosphate synthase  52.31 
 
 
622 aa  613  9.999999999999999e-175  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0928222  hitchhiker  0.00382162 
 
 
-
 
NC_007952  Bxe_B2827  1-deoxy-D-xylulose-5-phosphate synthase  52.4 
 
 
635 aa  613  9.999999999999999e-175  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_4820  1-deoxy-D-xylulose-5-phosphate synthase  52.4 
 
 
646 aa  614  9.999999999999999e-175  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_0879  1-deoxy-D-xylulose-5-phosphate synthase  53.51 
 
 
618 aa  610  1e-173  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.623076 
 
 
-
 
NC_008825  Mpe_A2631  1-deoxy-D-xylulose-5-phosphate synthase  52.13 
 
 
631 aa  611  1e-173  Methylibium petroleiphilum PM1  Bacteria  normal  0.898306  normal 
 
 
-
 
NC_013421  Pecwa_3281  1-deoxy-D-xylulose-5-phosphate synthase  50.56 
 
 
621 aa  609  1e-173  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_008061  Bcen_4486  1-deoxy-D-xylulose-5-phosphate synthase  51.92 
 
 
646 aa  611  1e-173  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_3879  1-deoxy-D-xylulose-5-phosphate synthase  51.92 
 
 
646 aa  611  1e-173  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.155835 
 
 
-
 
NC_009253  Dred_1078  deoxyxylulose-5-phosphate synthase  49.92 
 
 
635 aa  606  9.999999999999999e-173  Desulfotomaculum reducens MI-1  Bacteria  normal  0.0303047  n/a   
 
 
-
 
NC_011662  Tmz1t_1774  1-deoxy-D-xylulose-5-phosphate synthase  51.98 
 
 
622 aa  605  9.999999999999999e-173  Thauera sp. MZ1T  Bacteria  normal  0.0951101  n/a   
 
 
-
 
NC_007973  Rmet_2615  1-deoxy-D-xylulose-5-phosphate synthase  51.76 
 
 
637 aa  607  9.999999999999999e-173  Cupriavidus metallidurans CH34  Bacteria  normal  0.0207867  normal  0.922526 
 
 
-
 
NC_012560  Avin_07870  1-deoxy-D-xylulose-5-phosphate synthase  52.22 
 
 
633 aa  604  1.0000000000000001e-171  Azotobacter vinelandii DJ  Bacteria  normal  0.587  n/a   
 
 
-
 
NC_013889  TK90_0415  deoxyxylulose-5-phosphate synthase  52.05 
 
 
633 aa  602  1.0000000000000001e-171  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_20590  1-deoxy-D-xylulose-5-phosphate synthase  52.38 
 
 
633 aa  603  1.0000000000000001e-171  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1030  1-deoxy-D-xylulose-5-phosphate synthase  50.4 
 
 
621 aa  604  1.0000000000000001e-171  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_004258  1-deoxy-D-xylulose 5-phosphate synthase  49.04 
 
 
621 aa  603  1.0000000000000001e-171  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_010623  Bphy_3948  1-deoxy-D-xylulose-5-phosphate synthase  51.28 
 
 
632 aa  604  1.0000000000000001e-171  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_0956  1-deoxy-D-xylulose-5-phosphate synthase  52.31 
 
 
629 aa  604  1.0000000000000001e-171  Acidovorax ebreus TPSY  Bacteria  normal  0.922207  n/a   
 
 
-
 
NC_011206  Lferr_1642  deoxyxylulose-5-phosphate synthase  51.79 
 
 
624 aa  599  1e-170  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  hitchhiker  0.0000759377 
 
 
-
 
NC_011761  AFE_1974  1-deoxy-D-xylulose-5-phosphate synthase  51.79 
 
 
624 aa  599  1e-170  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I0933  1-deoxy-D-xylulose-5-phosphate synthase  49.52 
 
 
627 aa  600  1e-170  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.050049  n/a   
 
 
-
 
NC_009075  BURPS668_A2534  1-deoxy-D-xylulose-5-phosphate synthase  51.28 
 
 
634 aa  599  1e-170  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II0614  1-deoxy-D-xylulose-5-phosphate synthase  51.68 
 
 
634 aa  600  1e-170  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2438  1-deoxy-D-xylulose-5-phosphate synthase  50.48 
 
 
643 aa  599  1e-170  Marinobacter aquaeolei VT8  Bacteria  normal  0.688474  n/a   
 
 
-
 
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