| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_2426 |
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| Symbol | |
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| ID | 6287217 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | - |
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| Start bp | 2531041 |
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| End bp | 2532951 |
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| Gene Length | 1911 bp |
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| Protein Length | 636 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642626004 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_001899992 |
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| Protein GI | 187929505 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGTACG AACTTCTGAA CACCATCGAC GATCCGGCCG ACCTGCGCCG ACTGGACCGC
CGCCAACTCG GGCCGCTGGC CAACGAGTTG CGCGCCTTCG TGCTCGATTC CGTCTCGCAA
ACGGGCGGCC ATCTGTCGTC GAACCTGGGC ACGGTCGAAT TGACCATCGC ACTGCACTAC
GTCTTCAACA CGCCGGAAGA CCGCATCGTG TGGGACGTCG GCCACCAGAG CTATCCGCAC
AAGATCCTCA CGGGCCGCCG CGACCAGATG GGCTCGCTGC GCCAGCTGGA CGGCATCTCC
GGTTTCCCGC GCCGCAGCGA GAGCCCGTAC GACACGTTCG GCACCGCGCA CTCGTCCACG
TCGATTTCGG CTGCGCTTGG CATGGCCCTG GGCGCCAAGA CCAAGGGTGA AGACCGCGTC
GCCATTGCGG TGATCGGCGA CGGTGCGATG AGCGCCGGCA TGGCCTTCGA GGCGATGAAC
AACGCGGGCG TCTATAAAGA CCTGCCGCTG GTGGTCGTGC TCAACGACAA CGACATGTCG
ATCTCGCCGC CGGTGGGCGC GCTGAATCGC TATCTGGCGC GGCTGATGAG CGGGCAGTTT
TACGCGGCCA CCAAGAAGGG CGTGGAAAAA CTGCTGTCGG TGGCGCCGCC GGTGCTCGAG
TTTGCCAAGC GCTTCGAGGA ACACACCAAG GGCATGTTCG TGCCGGCCAC GATGTTCGAG
GAGTTCGGCT TTAACTACAT CGGCCCGATC GACGGGCACG ATCTCGAATC GCTGGTGCCG
ACGCTGCAGA ACATCCGCCA GCGCGCGCGT GAAGGCGGCG GGCCGCAGTT CCTCCACGTC
GTCACCAAGA AGGGCCAGGG TTACAAGCTG GCCGAGGCCG ATCCGATCCT TTATCACGGC
CCGGGCAAGT TCAACCCGCA GGAAGGCATC AAGCCTTCGG GGCGCCCAGC CAAGGTGACG
TATACGCAGG TGTTTGGCCA GTGGCTGTGC GATATGGCGG CGGCCGACAA GCGCTTGGTG
GGTATCACGC CGGCCATGCG AGAAGGCTCC GGGATGGTGG AGTTCGAGCA GCGCTTTCCC
GACCGCTATT ACGACGTCGG CATCGCCGAG CAGCACGCCG TCACCTTCGC CGGCGGTCTG
GCATGCGAGG GGCTGAAGCC CGTCGTCGCC ATCTATTCGA CGTTCCTGCA GCGGGGCTAT
GACCAGTTGA TCCACGATGT GGCGCTGCAG AACTTGCCGG TGGTATTCGC GCTGGACCGT
GCGGGTCTGG TGGGCGCAGA CGGCGCCACG CACGCGGGTG CCTACGACAT TGCCTACCTG
CGCTGCATCC CCAACATGAT GGTGATGACG CCGGCCGACG AGAACGAATG CCGCCAGCTT
TTGAGTACCG CGTTCGCGCA GGACTGCCCG ACAGCGGTGC GCTATCCGCG TGGTGCCGGT
ACGGGCGTGA CGGTGCAGCC GACGCTGGAG CCGCTGCCTG TGGGCAAGGC CGAAGTGCGC
CGCACGTCCA CGGCTCCGGC CGGCCAGCGC GTTGCGATTC TGGCGTTTGG TTCGATGGTT
GCCCCTGCTT CGGCAGCAGC TGAGCGTTTG GATGCGACCG TTGTCAACAT GCGCTTCGTC
AAGCCGCTCG ACGTGGCCTG CGTGCTGGAA ATGGCTCGCA CGCACGATTT CGTGGTCACG
GCAGAGGAAG GTTGCGTGAT GGGCGGCGCC GGCAGCGCCT GCCTGGAAGC GCTGGCTGCC
GCCGGTGTTG CAACGCCGGT ATTGCAGCTC GGCCTGCCCG ACCGCTTTGT CGATCACGGT
GATCACGCGG CGCTGCTGGC GCAGTGCGGG CTGGATGCCA ATGGCATCCT CGCTTCCATC
CGCGAGCGTT TTGCCGTGCA GCCGCGCGCT GCAGCCCCGC GCGTCGCCTG A
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| Protein sequence | MTYELLNTID DPADLRRLDR RQLGPLANEL RAFVLDSVSQ TGGHLSSNLG TVELTIALHY
VFNTPEDRIV WDVGHQSYPH KILTGRRDQM GSLRQLDGIS GFPRRSESPY DTFGTAHSST
SISAALGMAL GAKTKGEDRV AIAVIGDGAM SAGMAFEAMN NAGVYKDLPL VVVLNDNDMS
ISPPVGALNR YLARLMSGQF YAATKKGVEK LLSVAPPVLE FAKRFEEHTK GMFVPATMFE
EFGFNYIGPI DGHDLESLVP TLQNIRQRAR EGGGPQFLHV VTKKGQGYKL AEADPILYHG
PGKFNPQEGI KPSGRPAKVT YTQVFGQWLC DMAAADKRLV GITPAMREGS GMVEFEQRFP
DRYYDVGIAE QHAVTFAGGL ACEGLKPVVA IYSTFLQRGY DQLIHDVALQ NLPVVFALDR
AGLVGADGAT HAGAYDIAYL RCIPNMMVMT PADENECRQL LSTAFAQDCP TAVRYPRGAG
TGVTVQPTLE PLPVGKAEVR RTSTAPAGQR VAILAFGSMV APASAAAERL DATVVNMRFV
KPLDVACVLE MARTHDFVVT AEEGCVMGGA GSACLEALAA AGVATPVLQL GLPDRFVDHG
DHAALLAQCG LDANGILASI RERFAVQPRA AAPRVA
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