Gene Gura_1018 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGura_1018 
Symbol 
ID5164842 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGeobacter uraniireducens Rf4 
KingdomBacteria 
Replicon accessionNC_009483 
Strand
Start bp1210853 
End bp1212766 
Gene Length1914 bp 
Protein Length637 aa 
Translation table11 
GC content59% 
IMG OID640548514 
Product1-deoxy-D-xylulose-5-phosphate synthase 
Protein accessionYP_001229797 
Protein GI148263091 
COG category[H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism 
COG ID[COG1154] Deoxyxylulose-5-phosphate synthase 
TIGRFAM ID[TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTACACAC TTCTCAACAC AATAAACAGC CCGGCCGACC TGAAAAAGCT GAAGCAGGAC 
AAGTTGCTCA TCCTTGCCGA TGAAATCCGT GAATTTCTTC TGGAAACGGT TTCAAAGACG
GGCGGCCATC TCGCTTCGAA CCTCGGCTGC GTTGAACTGA CCCTGGCGCT CCATTACTGC
TTCAATTCAC CGGACGACAG CATCATCTGG GACGTGGGAC ACCAGGCCTA CACCCACAAG
ATCATCACCG GGCGCCGCGA CAAATTCATC ACCCAGCGCC AGTACCATGG GATCAGCGGC
TTTCCCAAGC GCTCCGAGTC CATGCACGAC GCATTCGGCG CAGGGCATTC CTCCACCTCC
ATCTCCGCCG GCTTGGGAAT GGCGGTCGCC CATGGCCTGA AGGAAGAAGC GAGCAAGGTC
ATCGCCGTGA TAGGCGACGG TTCGCTCACG GGCGGCATCG CCTTCGAAGC CCTGAACCAG
GCCGGACATC TGCACAAGAA CCTGATCGTC GTCCTCAACG ATAATGAGAT GTCCATTTCG
AAAAACGTCG GCGCCTTGTC CACCTTCATT TCCCGCAAAC TGACCGGCAG CTATTACCGC
GGCCTGAAAA AAGAGATGCA GGGACTGCTG AAGAACATCC CCGCTATCGG CGGCAACATC
CTCCATTTCG CCAGAAAAGC GGAAAACTCC CTGAAGGGCT TCCTTACCCC CGGCACCCTG
TTCGAAGCGC TCGGTTTCGA GTATATCGGC CCGGTACAGG GGCATGATCT GCCACAACTC
ATTGAAATCA TGCAAAACGT CCGCGCTCTC GAAGGTCCGG TGCTCGTACA TGTCATGACC
ACCAAGGGAA AAGGCTACCA GCCGGCAGAG AAAACCCCCG ACAAGTTCCA CGGCGTCGGC
CCCTTTGATG TGAAAACGGG CAAGGTGATC GCGGGCAAGC CCGGCGCTCA ATCCTATACC
GGCATCTTCG GCGAAACCAT GGTCAAACTG GCCGCAGAGG ACAAGAAGAT CATCGCCATC
ACCGCAGCCA TGCCCGACGG CACAGGCCTG ACACCGTTTG CCAAGGCTTA TCCCGACCGT
TTTTTCGATG TGGGCATTGC CGAACAGCAC GCCCTCACCT TTGCCGCCGG AATGGCCACC
GAAGGATTCC GGCCGGTGGC CGCCATTTAT TCCACCTTTG TCCAGCGCGC CTACGACCAG
GTATTCCACG ACATCTGCCT GCAAAAATTG CCGGTAACAC TGGCCCTTGA CCGCGCCGGC
CTGGTCGGCG ACGACGGCCC GACCCACCAC GGCGTGTTCG ACCTCTCCTA CCTGCGCCAT
CTGCCGGAGA TGACCGTCAT GGCGCCGAAG GATGAAAACG AATTGCAGCA CATGCTGAAA
ACCGCAATTT ACTCAGATCG TCCGATTGCC CTCCGCTATC CACGCGGCGC AGGCTACGGC
GTCGCCATGG ACGAGTCACT GCAAGCAATC CCCATCGGCG TTGGCGAACA GCTGGCAGAA
GGGGGTGACC TGACCCTCGT TGCCATCGGC AGCACCGTCT ATCCGGCCAT GGAGGCAGCC
GAACTCCTGA AAGAAAAGGG GATACGGGCA ACGGTCATCA ATGCCCGCTT CGTCAAGCCG
CTCGACCGCA ACCTGATCCT TGCTGCGGCC GGCCGCACCG GATGCATCAT CACCGTCGAA
GAAAATGCCA TGCAGGGAGG CTTCGGCAGT GCCGTGCTGG AACTTCTGGC AGATGAAGCT
GCCGGCATCA GGGTCAAACG GATCGGCGTT CCCGACCGAT ACATTGAGCA GGGGAGCCAG
GCGCAGCTCA GACAGGACCT GCGGCTGGAT GCCGCGGGGA TCGCACAAAC CGCCGCGGAG
TTTCTCGGAA AGAACGATTC ATCCCGTACC GGCCCAGGAG CCTGTCGGAC TTAG
 
Protein sequence
MYTLLNTINS PADLKKLKQD KLLILADEIR EFLLETVSKT GGHLASNLGC VELTLALHYC 
FNSPDDSIIW DVGHQAYTHK IITGRRDKFI TQRQYHGISG FPKRSESMHD AFGAGHSSTS
ISAGLGMAVA HGLKEEASKV IAVIGDGSLT GGIAFEALNQ AGHLHKNLIV VLNDNEMSIS
KNVGALSTFI SRKLTGSYYR GLKKEMQGLL KNIPAIGGNI LHFARKAENS LKGFLTPGTL
FEALGFEYIG PVQGHDLPQL IEIMQNVRAL EGPVLVHVMT TKGKGYQPAE KTPDKFHGVG
PFDVKTGKVI AGKPGAQSYT GIFGETMVKL AAEDKKIIAI TAAMPDGTGL TPFAKAYPDR
FFDVGIAEQH ALTFAAGMAT EGFRPVAAIY STFVQRAYDQ VFHDICLQKL PVTLALDRAG
LVGDDGPTHH GVFDLSYLRH LPEMTVMAPK DENELQHMLK TAIYSDRPIA LRYPRGAGYG
VAMDESLQAI PIGVGEQLAE GGDLTLVAIG STVYPAMEAA ELLKEKGIRA TVINARFVKP
LDRNLILAAA GRTGCIITVE ENAMQGGFGS AVLELLADEA AGIRVKRIGV PDRYIEQGSQ
AQLRQDLRLD AAGIAQTAAE FLGKNDSSRT GPGACRT