| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1022 |
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| Symbol | |
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| ID | 6408677 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 1084939 |
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| End bp | 1086864 |
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| Gene Length | 1926 bp |
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| Protein Length | 641 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642710936 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_001990054 |
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| Protein GI | 192289449 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.221512 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGACCGAAT TTAGTAAAAC ACCGCTTCTC GACACCATTC GCACACCGGA AGATCTGCGC
AAGCTGCGGA TCGATCAGGT TCGGCAGGTC GCCGACGAAT TGCGATTGGA GACGATCGAC
GCGGTATCGG TCACCGGCGG GCATTTTGGC GCCGGGCTCG GCGTGGTCGA ACTGACCACC
GCACTGCACT ATGTGTTCGA CACCCCGCGC GACCGGCTGA TCTGGGACGT TGGCCACCAG
GCCTACCCGC ACAAGATCCT GACCGGCCGG CGCGACCGCA TCCGCACCCT GCGCACCGGC
GGCGGCCTGT CCGGCTTCAC CAAGCGCACC GAGAGCGACC ATGACCCGTT CGGCGCCGGC
CACTCCTCGA CCTCGATCTC GGCCGGCCTC GGCATGGCGG TCGCCAGCGA ACTCGCCGGC
AAGAAGAACA ACGTCATCGC GGTGATCGGC GACGGTTCGA TCTCGGCCGG CATGGCCTAC
GAGGCGATGA ACAACGCCGG CGCGATGAAC TCCCGGCTGA TCGTCATCCT CAATGACAAC
AACATGTCGA TCGCCCCGCC GGTCGGCGCG ATGTCCGCCT ATCTGTCGCG GCTGTACTCG
GGCAAGACCT ATCGGTCGCT GCGCGAGGCC GGCAAGCAGA TTGGGAAGCA CCTACCGAAG
CTGATCGCCG ACCGCGCCGC CCGCGCCGAG GAATATTCCC GCGGCTTCAT GATGGGCGGC
GGCACCCTGT TCGAGGAACT CGGTTTCTAC TACGTCGGCC CGGTCGACGG CCACAATCTC
GACCACCTGC TGCCGATCCT GCAGAACGTC CGTGATGCCG ACACCGGCCC GTTCCTGATC
CACGTCGTCA CCCAGAAGGG CAAGGGCTAC GGCCCGGCCG AAGCGGCGGC CGACAAGTAT
CACGCGGTGG TCAAGTTCGA TATCGCCACC GGCGCCCAGG CCAAGGCCAA GTCGAACGCG
CCGTCCTATC AGAACGTGTT CGGCCAGAGC CTGGTCAAGG AAGCCCAGAA GGACGACAAG
ATCGTCGGCA TCACCGCGGC GATGCCGTCG GGCACCGGCA TCGACATCTT CGAGAAGGCC
TTCCCGAAGC GCACGTTCGA CGTCGGCATT GCCGAACAGC ACGCCGTGAC CTTCGCGGCC
GGCCTCGCCA CCGAAGGCTA CAAGCCGTTC TGCGCGATCT ACTCGACCTT CCTGCAGCGC
GCCTACGACC AGATCGTGCA CGACGTCGCG ATCCAGAAGC TGCCGGTGCG CTTTGCGATC
GACCGCGCGG GCCTGGTCGG TGCCGACGGC GCCACCCACG CCGGTTCGTT CGATAATGCC
TATCTCGGCT GCCTGCCCAA CATGGTGATC ATGGCTGCGG CCGACGAAGC CGAGCTGGTG
CACATGGTCG CCACCCAGGT GGCGATCGAC GACCGTCCGA GCGCGGTGCG CTATCCGCGC
GGCGAAGGCC GCGGTGTCGA GATGCCGGAA GTCGGCATTC CGCTGGAAAT CGGCAAGGGC
CGCGTCATCC GCCAGGGTAA CAAGGTCGCG CTGCTGTCGT TCGGTACCCG GCTCGCGGAG
GCCGAGAAGG CCGCCGACGA ACTCGCCACT CTCGGCCTCT CCACCACCGT CGCCGACGCC
CGCTTCATGA AGCCGCTCGA CGTCGAGCTG GTGCTGAAGC TCGCCCGCGA CCACGAAGTG
CTGCTCACCA TCGAAGAAGG TTCGATCGGC GGTTTCGGCA GCCACGTGAT GCAGACGCTG
GCCGAACACG GCATGCTCGA CGGCGAAGTG AAGATGCGGG CGCTGGTGCT GCCCGACGTA
TTCATGGATC ACGACAACCC GGTGGCGATG TACGCCCGCG CCGGCCTCGA CGCCAAGGCA
ATCGTCAAGA AGGTGTTCGA CGTGCTCGGC AAGGATGCCG CGACCGAGAC CTCGAAGCTG
GCCTGA
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| Protein sequence | MTEFSKTPLL DTIRTPEDLR KLRIDQVRQV ADELRLETID AVSVTGGHFG AGLGVVELTT
ALHYVFDTPR DRLIWDVGHQ AYPHKILTGR RDRIRTLRTG GGLSGFTKRT ESDHDPFGAG
HSSTSISAGL GMAVASELAG KKNNVIAVIG DGSISAGMAY EAMNNAGAMN SRLIVILNDN
NMSIAPPVGA MSAYLSRLYS GKTYRSLREA GKQIGKHLPK LIADRAARAE EYSRGFMMGG
GTLFEELGFY YVGPVDGHNL DHLLPILQNV RDADTGPFLI HVVTQKGKGY GPAEAAADKY
HAVVKFDIAT GAQAKAKSNA PSYQNVFGQS LVKEAQKDDK IVGITAAMPS GTGIDIFEKA
FPKRTFDVGI AEQHAVTFAA GLATEGYKPF CAIYSTFLQR AYDQIVHDVA IQKLPVRFAI
DRAGLVGADG ATHAGSFDNA YLGCLPNMVI MAAADEAELV HMVATQVAID DRPSAVRYPR
GEGRGVEMPE VGIPLEIGKG RVIRQGNKVA LLSFGTRLAE AEKAADELAT LGLSTTVADA
RFMKPLDVEL VLKLARDHEV LLTIEEGSIG GFGSHVMQTL AEHGMLDGEV KMRALVLPDV
FMDHDNPVAM YARAGLDAKA IVKKVFDVLG KDAATETSKL A
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