More than 300 homologs were found in PanDaTox collection
for query gene PputGB1_0572 on replicon NC_010322
Organism: Pseudomonas putida GB-1



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
CP001509  ECD_00368  1-deoxy-D-xylulose-5-phosphate synthase  61.73 
 
 		 620 aa  794    Escherichia coli BL21(DE3)  Bacteria  normal  1  n/a   
 
 
-
 
CP001637  EcDH1_3189  deoxyxylulose-5-phosphate synthase  61.89 
 
 		 620 aa  794    Escherichia coli DH1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008825  Mpe_A2631  1-deoxy-D-xylulose-5-phosphate synthase  61.32 
 
 		 631 aa  768    Methylibium petroleiphilum PM1  Bacteria  normal  0.898306  normal  1 
 
 
-
 
NC_009901  Spea_2991  1-deoxy-D-xylulose-5-phosphate synthase  61.46 
 
 		 621 aa  786    Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.00146592  n/a   
 
 
-
 
NC_009708  YpsIP31758_3112  1-deoxy-D-xylulose-5-phosphate synthase  63.25 
 
 		 619 aa  816    Yersinia pseudotuberculosis IP 31758  Bacteria  normal  1  n/a   
 
 
-
 
NC_002947  PP_0527  1-deoxy-D-xylulose-5-phosphate synthase  99.21 
 
 		 631 aa  1284    Pseudomonas putida KT2440  Bacteria  normal  0.384835  normal  1 
 
 
-
 
NC_009079  BMA10247_A0364  1-deoxy-D-xylulose-5-phosphate synthase  59.9 
 
 		 651 aa  744    Burkholderia mallei NCTC 10247  Bacteria  normal  1  n/a   
 
 
-
 
NC_008783  BARBAKC583_0400  1-deoxy-D-xylulose-5-phosphate synthase  52.46 
 
 		 638 aa  635    Bartonella bacilliformis KC583  Bacteria  normal  1  n/a   
 
 
-
 
NC_002977  MCA0817  1-deoxy-D-xylulose-5-phosphate synthase  65.41 
 
 		 639 aa  801    Methylococcus capsulatus str. Bath  Bacteria  normal  0.64849  n/a   
 
 
-
 
NC_003295  RSc2221  1-deoxy-D-xylulose-5-phosphate synthase  62.02 
 
 		 636 aa  768    Ralstonia solanacearum GMI1000  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009052  Sbal_1357  1-deoxy-D-xylulose-5-phosphate synthase  61.56 
 
 		 622 aa  782    Shewanella baltica OS155  Bacteria  hitchhiker  0.0000384826  n/a   
 
 
-
 
NC_003910  CPS_1088  1-deoxy-D-xylulose-5-phosphate synthase  56.47 
 
 		 630 aa  735    Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_008784  BMASAVP1_1512  1-deoxy-D-xylulose-5-phosphate synthase  59.9 
 
 		 651 aa  744    Burkholderia mallei SAVP1  Bacteria  normal  1  n/a   
 
 
-
 
NC_004310  BR0436  1-deoxy-D-xylulose-5-phosphate synthase  53.82 
 
 		 643 aa  650    Brucella suis 1330  Bacteria  normal  1  n/a   
 
 
-
 
NC_004347  SO_1525  1-deoxy-D-xylulose-5-phosphate synthase  61.69 
 
 		 622 aa  776    Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_004578  PSPTO_0698  deoxyxylulose-5-phosphate synthase  87.48 
 
 		 631 aa  1147    Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_009656  PSPA7_1057  1-deoxy-D-xylulose-5-phosphate synthase  86.15 
 
 		 627 aa  1117    Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2392  1-deoxy-D-xylulose-5-phosphate synthase  59.9 
 
 		 634 aa  744    Burkholderia pseudomallei 1106a  Bacteria  normal  1  n/a   
 
 
-
 
NC_010086  Bmul_4820  1-deoxy-D-xylulose-5-phosphate synthase  60.9 
 
 		 646 aa  758    Burkholderia multivorans ATCC 17616  Bacteria  normal  1  normal  1 
 
 
-
 
NC_006349  BMAA0330  1-deoxy-D-xylulose-5-phosphate synthase  59.9 
 
 		 634 aa  744    Burkholderia mallei ATCC 23344  Bacteria  normal  1  n/a   
 
 
-
 
NC_007005  Psyr_0604  1-deoxy-D-xylulose-5-phosphate synthase  87.94 
 
 		 630 aa  1149    Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  0.390731 
 
 
-
 
NC_007204  Psyc_0221  1-deoxy-D-xylulose-5-phosphate synthase  53 
 
 		 680 aa  669    Psychrobacter arcticus 273-4  Bacteria  normal  1  normal  0.354524 
 
 
-
 
NC_007298  Daro_3061  1-deoxy-D-xylulose-5-phosphate synthase  59.28 
 
 		 618 aa  742    Dechloromonas aromatica RCB  Bacteria  hitchhiker  0.004887  hitchhiker  0.00000111191 
 
 
-
 
NC_009379  Pnuc_1704  deoxyxylulose-5-phosphate synthase  57.03 
 
 		 633 aa  716    Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007347  Reut_A0882  1-deoxy-D-xylulose-5-phosphate synthase  61.64 
 
 		 638 aa  767    Ralstonia eutropha JMP134  Bacteria  normal  1  n/a   
 
 
-
 
NC_007404  Tbd_0879  1-deoxy-D-xylulose-5-phosphate synthase  63.78 
 
 		 618 aa  786    Thiobacillus denitrificans ATCC 25259  Bacteria  normal  1  normal  0.623076 
 
 
-
 
NC_010465  YPK_3253  1-deoxy-D-xylulose-5-phosphate synthase  63.25 
 
 		 619 aa  816    Yersinia pseudotuberculosis YPIII  Bacteria  normal  1  n/a   
 
 
-
 
NC_009457  VC0395_A0412  1-deoxy-D-xylulose-5-phosphate synthase  62.46 
 
 		 626 aa  787    Vibrio cholerae O395  Bacteria  normal  1  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0842  1-deoxy-D-xylulose-5-phosphate synthase  59.9 
 
 		 634 aa  744    Burkholderia pseudomallei 1710b  Bacteria  normal  1  n/a   
 
 
-
 
NC_007484  Noc_1743  1-deoxy-D-xylulose-5-phosphate synthase  64.18 
 
 		 640 aa  817    Nitrosococcus oceani ATCC 19707  Bacteria  normal  1  n/a   
 
 
-
 
NC_007492  Pfl01_5007  1-deoxy-D-xylulose-5-phosphate synthase  88.41 
 
 		 632 aa  1134    Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009801  EcE24377A_0451  1-deoxy-D-xylulose-5-phosphate synthase  61.56 
 
 		 620 aa  792    Escherichia coli E24377A  Bacteria  normal  1  n/a   
 
 
-
 
NC_009524  PsycPRwf_0411  1-deoxy-D-xylulose-5-phosphate synthase  53.31 
 
 		 710 aa  681    Psychrobacter sp. PRwf-1  Bacteria  normal  1  normal  0.0259186 
 
 
-
 
NC_010002  Daci_2242  1-deoxy-D-xylulose-5-phosphate synthase  60.39 
 
 		 638 aa  744    Delftia acidovorans SPH-1  Bacteria  normal  1  normal  0.0315294 
 
 
-
 
NC_007511  Bcep18194_B2211  1-deoxy-D-xylulose-5-phosphate synthase  60.71 
 
 		 634 aa  771    Burkholderia sp. 383  Bacteria  normal  0.41875  normal  1 
 
 
-
 
NC_009667  Oant_0547  1-deoxy-D-xylulose-5-phosphate synthase  53.82 
 
 		 638 aa  658    Ochrobactrum anthropi ATCC 49188  Bacteria  normal  1  n/a   
 
 
-
 
NC_009719  Plav_0781  1-deoxy-D-xylulose-5-phosphate synthase  54.69 
 
 		 650 aa  664    Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.128474  normal  0.356919 
 
 
-
 
NC_008835  BMA10229_1706  1-deoxy-D-xylulose-5-phosphate synthase  59.9 
 
 		 651 aa  744    Burkholderia mallei NCTC 10229  Bacteria  normal  1  n/a   
 
 
-
 
NC_009832  Spro_1078  1-deoxy-D-xylulose-5-phosphate synthase  62.93 
 
 		 621 aa  805    Serratia proteamaculans 568  Bacteria  normal  1  hitchhiker  0.000138004 
 
 
-
 
NC_009439  Pmen_3844  1-deoxy-D-xylulose-5-phosphate synthase  86.01 
 
 		 631 aa  1127    Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009075  BURPS668_A2534  1-deoxy-D-xylulose-5-phosphate synthase  60.06 
 
 		 634 aa  745    Burkholderia pseudomallei 668  Bacteria  normal  1  n/a   
 
 
-
 
NC_009665  Shew185_1343  1-deoxy-D-xylulose-5-phosphate synthase  61.85 
 
 		 622 aa  782    Shewanella baltica OS185  Bacteria  hitchhiker  0.0000676774  n/a   
 
 
-
 
NC_009800  EcHS_A0491  1-deoxy-D-xylulose-5-phosphate synthase  61.56 
 
 		 620 aa  792    Escherichia coli HS  Bacteria  normal  1  n/a   
 
 
-
 
NC_007614  Nmul_A0236  1-deoxy-D-xylulose-5-phosphate synthase  61.99 
 
 		 614 aa  790    Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.947213  n/a   
 
 
-
 
NC_007643  Rru_A0054  1-deoxy-D-xylulose-5-phosphate synthase  52.48 
 
 		 645 aa  636    Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_010513  Xfasm12_1447  1-deoxy-D-xylulose-5-phosphate synthase  57.95 
 
 		 635 aa  736    Xylella fastidiosa M12  Bacteria  normal  1  n/a   
 
 
-
 
NC_009511  Swit_1461  1-deoxy-D-xylulose-5-phosphate synthase  54.37 
 
 		 639 aa  654    Sphingomonas wittichii RW1  Bacteria  normal  0.289953  normal  1 
 
 
-
 
NC_007650  BTH_II0614  1-deoxy-D-xylulose-5-phosphate synthase  60.58 
 
 		 634 aa  747    Burkholderia thailandensis E264  Bacteria  normal  1  n/a   
 
 
-
 
NC_009438  Sputcn32_1275  1-deoxy-D-xylulose-5-phosphate synthase  61.07 
 
 		 622 aa  787    Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.000628386  n/a   
 
 
-
 
NC_007778  RPB_4460  1-deoxy-D-xylulose-5-phosphate synthase  53.51 
 
 		 638 aa  640    Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007794  Saro_0161  1-deoxy-D-xylulose-5-phosphate synthase  52.97 
 
 		 640 aa  643    Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  1  n/a   
 
 
-
 
NC_009783  VIBHAR_01173  1-deoxy-D-xylulose-5-phosphate synthase  63.03 
 
 		 621 aa  796    Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009512  Pput_0561  1-deoxy-D-xylulose-5-phosphate synthase  99.21 
 
 		 631 aa  1283    Pseudomonas putida F1  Bacteria  normal  1  normal  0.763827 
 
 
-
 
NC_007908  Rfer_2875  1-deoxy-D-xylulose-5-phosphate synthase  61.89 
 
 		 632 aa  780    Rhodoferax ferrireducens T118  Bacteria  normal  1  n/a   
 
 
-
 
NC_007912  Sde_3381  1-deoxy-D-xylulose-5-phosphate synthase  61.95 
 
 		 649 aa  816    Saccharophagus degradans 2-40  Bacteria  normal  1  normal  0.240721 
 
 
-
 
NC_010501  PputW619_0579  1-deoxy-D-xylulose-5-phosphate synthase  98.1 
 
 		 631 aa  1270    Pseudomonas putida W619  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007947  Mfla_2133  1-deoxy-D-xylulose-5-phosphate synthase  62.81 
 
 		 614 aa  796    Methylobacillus flagellatus KT  Bacteria  hitchhiker  0.000520629  normal  1 
 
 
-
 
NC_007948  Bpro_1747  1-deoxy-D-xylulose-5-phosphate synthase  62.14 
 
 		 635 aa  774    Polaromonas sp. JS666  Bacteria  normal  1  normal  0.123274 
 
 
-
 
NC_007952  Bxe_B2827  1-deoxy-D-xylulose-5-phosphate synthase  60.58 
 
 		 635 aa  758    Burkholderia xenovorans LB400  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007954  Sden_2571  1-deoxy-D-xylulose-5-phosphate synthase  60.42 
 
 		 622 aa  788    Shewanella denitrificans OS217  Bacteria  decreased coverage  0.000000155122  n/a   
 
 
-
 
NC_007958  RPD_4305  1-deoxy-D-xylulose-5-phosphate synthase  53.99 
 
 		 638 aa  642    Rhodopseudomonas palustris BisB5  Bacteria  normal  0.302176  normal  0.192366 
 
 
-
 
NC_007963  Csal_0099  1-deoxy-D-xylulose-5-phosphate synthase  64.85 
 
 		 653 aa  843    Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_010468  EcolC_3213  1-deoxy-D-xylulose-5-phosphate synthase  61.56 
 
 		 620 aa  792    Escherichia coli ATCC 8739  Bacteria  normal  1  hitchhiker  0.00000252771 
 
 
-
 
NC_007969  Pcryo_0245  1-deoxy-D-xylulose-5-phosphate synthase  52.48 
 
 		 680 aa  671    Psychrobacter cryohalolentis K5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007973  Rmet_2615  1-deoxy-D-xylulose-5-phosphate synthase  60.29 
 
 		 637 aa  762    Cupriavidus metallidurans CH34  Bacteria  normal  0.0207867  normal  0.922526 
 
 
-
 
NC_007984  BCI_0275  1-deoxy-D-xylulose-5-phosphate synthase  58.6 
 
 		 623 aa  746    Baumannia cicadellinicola str. Hc (Homalodisca coagulata)  Bacteria  normal  0.395507  n/a   
 
 
-
 
NC_008786  Veis_3283  1-deoxy-D-xylulose-5-phosphate synthase  58.81 
 
 		 631 aa  721    Verminephrobacter eiseniae EF01-2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009831  Ssed_3329  1-deoxy-D-xylulose-5-phosphate synthase  62.38 
 
 		 621 aa  786    Shewanella sediminis HAW-EB3  Bacteria  normal  0.0891002  normal  1 
 
 
-
 
NC_010506  Swoo_3478  1-deoxy-D-xylulose-5-phosphate synthase  61.14 
 
 		 621 aa  783    Shewanella woodyi ATCC 51908  Bacteria  normal  0.0957746  normal  0.0274929 
 
 
-
 
NC_008061  Bcen_4486  1-deoxy-D-xylulose-5-phosphate synthase  60.39 
 
 		 646 aa  760    Burkholderia cenocepacia AU 1054  Bacteria  normal  1  n/a   
 
 
-
 
NC_008228  Patl_1319  deoxyxylulose-5-phosphate synthase  60.69 
 
 		 621 aa  758    Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_008254  Meso_0735  1-deoxy-D-xylulose-5-phosphate synthase  54.05 
 
 		 650 aa  651    Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009485  BBta_2479  1-deoxy-D-xylulose-5-phosphate synthase  53.35 
 
 		 641 aa  641    Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010087  Bmul_5943  deoxyxylulose-5-phosphate synthase  57.65 
 
 		 675 aa  692    Burkholderia multivorans ATCC 17616  Bacteria  normal  0.601291  normal  1 
 
 
-
 
NC_008789  Hhal_0983  deoxyxylulose-5-phosphate synthase  57.87 
 
 		 624 aa  714    Halorhodospira halophila SL1  Bacteria  normal  0.288267  n/a   
 
 
-
 
NC_008309  HS_0905  1-deoxy-D-xylulose-5-phosphate synthase  59.71 
 
 		 617 aa  758    Haemophilus somnus 129PT  Bacteria  normal  1  n/a   
 
 
-
 
NC_009436  Ent638_0887  1-deoxy-D-xylulose-5-phosphate synthase  60.45 
 
 		 620 aa  782    Enterobacter sp. 638  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008321  Shewmr4_2731  1-deoxy-D-xylulose-5-phosphate synthase  61.34 
 
 		 622 aa  775    Shewanella sp. MR-4  Bacteria  hitchhiker  0.000470033  normal  0.733812 
 
 
-
 
NC_008322  Shewmr7_2804  1-deoxy-D-xylulose-5-phosphate synthase  61.34 
 
 		 622 aa  775    Shewanella sp. MR-7  Bacteria  normal  0.0291177  normal  0.873498 
 
 
-
 
NC_008340  Mlg_1381  1-deoxy-D-xylulose-5-phosphate synthase  60.94 
 
 		 628 aa  774    Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.604583  normal  0.510709 
 
 
-
 
NC_008345  Sfri_2790  1-deoxy-D-xylulose-5-phosphate synthase  61.01 
 
 		 621 aa  791    Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.00619282  n/a   
 
 
-
 
NC_010159  YpAngola_A3074  1-deoxy-D-xylulose-5-phosphate synthase  63.09 
 
 		 619 aa  812    Yersinia pestis Angola  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008347  Mmar10_0849  1-deoxy-D-xylulose-5-phosphate synthase  52.72 
 
 		 643 aa  638    Maricaulis maris MCS10  Bacteria  normal  1  normal  0.313067 
 
 
-
 
NC_008391  Bamb_3250  1-deoxy-D-xylulose-5-phosphate synthase  60.42 
 
 		 646 aa  761    Burkholderia ambifaria AMMD  Bacteria  normal  1  normal  0.0235548 
 
 
-
 
NC_008463  PA14_11550  1-deoxy-D-xylulose-5-phosphate synthase  86.31 
 
 		 627 aa  1103    Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008543  Bcen2424_3879  1-deoxy-D-xylulose-5-phosphate synthase  60.39 
 
 		 646 aa  760    Burkholderia cenocepacia HI2424  Bacteria  normal  1  normal  0.155835 
 
 
-
 
NC_010322  PputGB1_0572  1-deoxy-D-xylulose-5-phosphate synthase  100 
 
 		 631 aa  1289    Pseudomonas putida GB-1  Bacteria  normal  1  normal  0.888062 
 
 
-
 
NC_008576  Mmc1_1048  1-deoxy-D-xylulose-5-phosphate synthase  53.91 
 
 		 622 aa  653    Magnetococcus sp. MC-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008577  Shewana3_2901  1-deoxy-D-xylulose-5-phosphate synthase  61.34 
 
 		 622 aa  773    Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00195548  hitchhiker  0.00304381 
 
 
-
 
NC_008782  Ajs_1038  1-deoxy-D-xylulose-5-phosphate synthase  61.26 
 
 		 629 aa  753    Acidovorax sp. JS42  Bacteria  normal  1  normal  0.151705 
 
 
-
 
NC_009505  BOV_0443  1-deoxy-D-xylulose-5-phosphate synthase  53.82 
 
 		 643 aa  651    Brucella ovis ATCC 25840  Bacteria  normal  0.580074  n/a   
 
 
-
 
NC_010498  EcSMS35_0456  1-deoxy-D-xylulose-5-phosphate synthase  61.73 
 
 		 620 aa  794    Escherichia coli SMS-3-5  Bacteria  normal  1  normal  0.927308 
 
 
-
 
NC_009654  Mmwyl1_1145  deoxyxylulose-5-phosphate synthase  65.02 
 
 		 625 aa  851    Marinomonas sp. MWYL1  Bacteria  normal  0.820706  normal  1 
 
 
-
 
NC_009997  Sbal195_1382  1-deoxy-D-xylulose-5-phosphate synthase  62.01 
 
 		 622 aa  783    Shewanella baltica OS195  Bacteria  normal  0.211021  normal  0.482366 
 
 
-
 
NC_008700  Sama_2436  1-deoxy-D-xylulose-5-phosphate synthase  64.33 
 
 		 622 aa  806    Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.00469299  normal  1 
 
 
-
 
NC_008709  Ping_2240  deoxyxylulose-5-phosphate synthase  59.23 
 
 		 622 aa  762    Psychromonas ingrahamii 37  Bacteria  normal  1  normal  0.381879 
 
 
-
 
NC_008740  Maqu_2438  1-deoxy-D-xylulose-5-phosphate synthase  71.86 
 
 		 643 aa  929    Marinobacter aquaeolei VT8  Bacteria  normal  0.688474  n/a   
 
 
-
 
NC_009092  Shew_2771  1-deoxy-D-xylulose-5-phosphate synthase  62.11 
 
 		 622 aa  791    Shewanella loihica PV-4  Bacteria  hitchhiker  0.00248212  normal  0.949391 
 
 
-
 
NC_008752  Aave_2015  1-deoxy-D-xylulose-5-phosphate synthase  60.81 
 
 		 622 aa  768    Acidovorax citrulli AAC00-1  Bacteria  normal  0.0928222  hitchhiker  0.00382162 
 
 
-
 
NC_008781  Pnap_1501  1-deoxy-D-xylulose-5-phosphate synthase  60.87 
 
 		 636 aa  759    Polaromonas naphthalenivorans CJ2  Bacteria  normal  1  normal  1 
 
 
-
 
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