| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_2033 |
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| Symbol | |
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| ID | 8019694 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | - |
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| Start bp | 2164950 |
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| End bp | 2166860 |
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| Gene Length | 1911 bp |
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| Protein Length | 636 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644830819 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_002981984 |
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| Protein GI | 241663624 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.720268 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGTACG AACTTCTGAA CACCATCGAC GATCCGGCCG ACCTGCGCCG CCTGGACCGC
CGTCAACTCG GGCCGCTGGC AGATGAGTTG CGCGCCTTCG TGCTCGATTC CGTCTCTCAA
ACGGGCGGCC ACCTGTCGTC GAACCTGGGC ACGGTCGAGC TGACCATCGC ACTGCACTAC
GTCTTCAACA CGCCGGAAGA CCGCATCGTG TGGGACGTCG GCCACCAGAG CTATCCGCAC
AAGATCCTGA CGGGCCGCCG CGACCAGATG GGCTCTTTGC GTCAGCTGGA CGGCATCTCC
GGCTTCCCGC GCCGCAGCGA GAGCCCGTAC GACACGTTCG GTACCGCGCA CTCCTCCACG
TCGATTTCGG CCGCGCTCGG TATGGCCCTG GGCGCCAAGA CCAACGGTGA AGACCGCGTC
GCCATTGCCG TGATCGGCGA CGGTGCGATG AGCGCCGGCA TGGCCTTCGA GGCGATGAAC
AACGCGGGCG TCTATAAAGA CCTGCCGCTG GTGGTGGTGC TGAACGACAA CGACATGTCG
ATCTCGCCGC CGGTGGGGGC GCTGAACCGC TATCTGGCGC GGCTGATGAG CGGGCAGTTC
TACGCGGCCA CCAAGAAGGG CGTGGAAAAG CTGCTGTCGG TGGCGCCGCC GGTGCTCGAG
TTTGCCAAGC GCTTCGAGGA ACACACCAAG GGCATGTTCG TGCCGGCCAC GATGTTCGAG
GAGTTCGGCT TCAATTACAT CGGTCCGATC GACGGGCACG ATCTGGAATC GCTGGTACCG
ACGCTGCAGA ACATCCGCCA GCGCGCACGT GAAGGTGGCG GCCCGCAGTT TCTGCACGTC
GTCACCAAGA AGGGCCAGGG CTACAAGCTG GCCGAGGCTG ATCCGATCCT CTATCACGGC
CCGGGCAAGT TCAATCCGCA GGAGGGCATC AAGCCTTCGG GGCGTCCGGC CAAAGTCACG
TACACGCAAG TGTTCGGCCA ATGGCTGTGC GATATGGCGG CGGCTGACAA GCGCCTGGTG
GGTATCACGC CGGCCATGCG CGAAGGCTCG GGGATGGTGG AGTTCGAACA GCGCTTTCCC
GATCGCTATT ACGACGTCGG CATCGCCGAG CAGCACGCCG TCACCTTTGC CGGCGGCCTG
GCGTGCGAGG GGCTCAAGCC GGTCGTTGCG ATTTATTCGA CGTTCCTGCA GCGCGGCTAC
GACCAGTTGA TCCACGACGT GGCGCTGCAG AACCTGCCGG TGGTGTTTGC GCTGGACCGC
GCAGGGCTGG TCGGGGCGGA CGGCGCCACG CACGCCGGTG CCTACGACAT TGCCTACCTG
CGCTGCATCC CCAACATGAT GGTGATGACG CCGGCCGACG AGAACGAATG CCGCCAACTC
CTTAGCACAG CCTTCGCGCA AGATGGCCCG ACAGCGGTCC GCTATCCGCG GGGTGCCGGC
ACGGGCGTGG CGGTGCAGCC GACGCTGGAG CCGCTGCCCG TGGGCAAGGC CGAAGTGCGC
CGCGCTTCCA CCGCCCCGGC TGGCCAGCGT GTGGCGATTC TGGCATTTGG TTCGATGGTG
GCCCCGGCTT CGGCAGCGGC TGAGCGTTTG GATGCGACCG TCGTCAACAT GCGCTTCGTC
AAGCCTCTCG ACGTGGCTTG CGTGCTGGAA ATGGCCCGCA CGCACGATTA CGTGGTCACC
GTAGAGGAAG GCTGCGTGAT GGGCGGTGCA GGCAGCGCCT GTCTAGAAGC ACTGGCTTGC
GCAGGTGTCG CCACGCCAGT GCTGCAACTC GGCCTGCCCG ACCGCTTTGT CGATCACGGT
GATCACGCGG CGCTGCTGGC GCAATGCGGG CTCGATGCCA ACGGCATCCT CGCTTGCATC
CGCGAGCGTT TTGCCGTCCA GCCGCGTGCT GCCGCCCCGC GCGTCGCCTG A
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| Protein sequence | MTYELLNTID DPADLRRLDR RQLGPLADEL RAFVLDSVSQ TGGHLSSNLG TVELTIALHY
VFNTPEDRIV WDVGHQSYPH KILTGRRDQM GSLRQLDGIS GFPRRSESPY DTFGTAHSST
SISAALGMAL GAKTNGEDRV AIAVIGDGAM SAGMAFEAMN NAGVYKDLPL VVVLNDNDMS
ISPPVGALNR YLARLMSGQF YAATKKGVEK LLSVAPPVLE FAKRFEEHTK GMFVPATMFE
EFGFNYIGPI DGHDLESLVP TLQNIRQRAR EGGGPQFLHV VTKKGQGYKL AEADPILYHG
PGKFNPQEGI KPSGRPAKVT YTQVFGQWLC DMAAADKRLV GITPAMREGS GMVEFEQRFP
DRYYDVGIAE QHAVTFAGGL ACEGLKPVVA IYSTFLQRGY DQLIHDVALQ NLPVVFALDR
AGLVGADGAT HAGAYDIAYL RCIPNMMVMT PADENECRQL LSTAFAQDGP TAVRYPRGAG
TGVAVQPTLE PLPVGKAEVR RASTAPAGQR VAILAFGSMV APASAAAERL DATVVNMRFV
KPLDVACVLE MARTHDYVVT VEEGCVMGGA GSACLEALAC AGVATPVLQL GLPDRFVDHG
DHAALLAQCG LDANGILACI RERFAVQPRA AAPRVA
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