| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_4305 |
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| Symbol | |
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| ID | 4024829 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 4771250 |
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| End bp | 4773166 |
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| Gene Length | 1917 bp |
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| Protein Length | 638 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637964514 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_571423 |
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| Protein GI | 91978764 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.302176 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.192366 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAGTAAAA CTCCGCTTCT CGACACCATC CGCACGCCGG AAGATTTACG CAAGCTCCGG
GTCGATCAGG TCCAGCAGGT CGCCGACGAA TTGCGTCAGG AAACCATCGA CGCCGTCTCG
GTCACGGGCG GCCATTTCGG CGCCGGCCTC GGCGTCGTCG AACTGACCAC CGCCATTCAC
TATGTCTTCG ACACCCCGCG CGACCGTCTG ATCTGGGACG TCGGCCACCA GGCCTATCCC
CACAAGATCC TGACCGGCCG CCGCGACCGC ATCCGCACGC TGCGCACCGC TGGCGGCCTG
TCCGGCTTCA CCAAGCGCAC CGAGAGCGAC TACGATCCGT TCGGCGCTGC GCATTCCTCG
ACCTCGATTT CCGCCGGCCT CGGCATGGCG GTGGCGCGTG ATCTCGCCGG TGGCAACAAC
AACGTCATCG CGGTGATCGG CGACGGTTCG ATCTCGGCCG GCATGGCCTA TGAGGCGATG
AACAACGCCG GCGCGATGAA CTCCCGTCTT ATCGTCATTC TCAATGACAA CAACATGTCG
ATCGCGCCGC CGGTCGGCGC GATGTCGGCG TATCTGTCGC GGCTGTACTC CGGCAAGACC
TACCGCTCGC TGCGCGAGGC CGGCAAGCAG ATCGGCAAGC ATCTGCCGAA GCTGATCGCC
GACCGCGCCG CCCGCGCCGA GGAATATTCC CGCGGCTTCA TGATGGGCGG CGGCACGCTG
TTCGAGGAGC TCGGCTTCTA TTATGTCGGC CCGATCGACG GCCACAACCT CGATCATCTG
CTGCCGATCC TGCAGAACGT CCGCGACGCC GAGACCGGCC CGTTCCTGAT CCATGTCGTG
ACCCAGAAGG GCAAGGGCTA CGCCCCGGCG GAAGCCGCGT CCGACAAGTA TCACGCGGTG
GTCAAGTTCG ACATCGCCAC CGGCACCCAG GCCAAGGCCA AGTCGAACGC GCCGTCGTAT
CAGAACGTGT TCGGCCAGAG CCTGGTCAAG GAAGCCGCCA AGGACGACAA GATCGTCGGC
ATCACCGCGG CGATGCCGTC CGGCACCGGC ATCGACATCT TCGAGAAGGC GTTCCCGGCC
CGCACTTTCG ACGTCGGCAT CGCCGAGCAG CACGCGGTGA CCTTCGCCGC CGGTCTGGCG
ACCGAAGGCT ACAAGCCGTT CTGCGCGATC TACTCGACCT TCCTGCAACG CGCCTATGAC
CAGGTGGTCC ACGACGTCGC GCTGCAGAGC CTGCCGGTCC GCTTCGCGAT CGATCGCGCC
GGCCTGGTCG GCGCCGACGG CGCGACCCAT GCGGGTTCGT TCGACAACGC CTATCTGGGC
TGCCTGCCGA ACATGGTGAT CATGGCGGCC TCCGACGAAG CCGAGCTGGT GCACATGGTG
GCGACGCAGG TCGCGATCAA CGACCGGCCG AGCGCGCTGC GCTATCCGCG CGGCGAAGGC
CGCGGCGTCG AAATGCCCGA CGTCGGCGTG CCGCTGGAAA TCGGCAAGGG CCGCGTCATC
CGCCAGGGCA ACAAGGTCGC GCTGCTGTCG TTCGGAACCC GGCTCGCCGA GTGCGAGAAG
GCCGCCGAGG AGCTGGCGGC GCTCGGCCTC TCCACCACCG TCGCCGACGC GCGCTTCATG
AAGCCGCTCG ACGTCGATCT GGTGCTGAAG CTCGCCAATG AGCACGAGAT CCTGATCACC
ATCGAGGAAG GCTCGATCGG CGGCTTCGGC ACCCATGTGA TGCAGACGCT GGCCGAGCAC
GGCAAGCTCG ACGGCGAGGT CAAGATGCGG GCGATGGTGC TGCCCGACGT GTTCCTCGAC
CACGACACCC CGACGGCGAT GTATGCCAAT GCCGGCCTCG ACGCCAAGGC GATCGTCAAG
AAGGTGTTCG AGGCGCTCGG CAAGGAACAC AAGGCCGAGA CCGTCAAGCT GGCCTGA
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| Protein sequence | MSKTPLLDTI RTPEDLRKLR VDQVQQVADE LRQETIDAVS VTGGHFGAGL GVVELTTAIH
YVFDTPRDRL IWDVGHQAYP HKILTGRRDR IRTLRTAGGL SGFTKRTESD YDPFGAAHSS
TSISAGLGMA VARDLAGGNN NVIAVIGDGS ISAGMAYEAM NNAGAMNSRL IVILNDNNMS
IAPPVGAMSA YLSRLYSGKT YRSLREAGKQ IGKHLPKLIA DRAARAEEYS RGFMMGGGTL
FEELGFYYVG PIDGHNLDHL LPILQNVRDA ETGPFLIHVV TQKGKGYAPA EAASDKYHAV
VKFDIATGTQ AKAKSNAPSY QNVFGQSLVK EAAKDDKIVG ITAAMPSGTG IDIFEKAFPA
RTFDVGIAEQ HAVTFAAGLA TEGYKPFCAI YSTFLQRAYD QVVHDVALQS LPVRFAIDRA
GLVGADGATH AGSFDNAYLG CLPNMVIMAA SDEAELVHMV ATQVAINDRP SALRYPRGEG
RGVEMPDVGV PLEIGKGRVI RQGNKVALLS FGTRLAECEK AAEELAALGL STTVADARFM
KPLDVDLVLK LANEHEILIT IEEGSIGGFG THVMQTLAEH GKLDGEVKMR AMVLPDVFLD
HDTPTAMYAN AGLDAKAIVK KVFEALGKEH KAETVKLA
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