Gene Mpop_1830 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMpop_1830 
Symbol 
ID6312719 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethylobacterium populi BJ001 
KingdomBacteria 
Replicon accessionNC_010725 
Strand
Start bp1967067 
End bp1969049 
Gene Length1983 bp 
Protein Length660 aa 
Translation table11 
GC content70% 
IMG OID642650553 
Product1-deoxy-D-xylulose-5-phosphate synthase 
Protein accessionYP_001924528 
Protein GI188581083 
COG category[H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism 
COG ID[COG1154] Deoxyxylulose-5-phosphate synthase 
TIGRFAM ID[TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAAGGCTT TGGCACTAGC GGACACGACG ATCCTCGAGG GTCTTGAGAC GCCGGATCGT 
CTCCGGCTTC TGCCGGAGAG CGAGCTGCAG CGGGTCGCCG ACGCGGTGCG CGCCGAGATG
ATCGACGCCG TGTCGATCAC CGGTGGCCAT CTCGGCTCGG GGCTCGGCGT GGTCGAGCTG
ACGGTGGCGC TCCACCACGT GTTCGACACC CCCGACGACC GCATCGTCTG GGACGTCGGC
CACCAGTGCT ACCCGCACAA GATCCTCACC GGTCGCCGCG ACCGCATCCG CACGCTCCGC
CAGGGCGGCG GCCTGTCCGG CTTCACCAAG CGCTCGGAGA GCGAGTACGA CCCCTTCGGC
GCGGCCCACT CCTCGACCTC GATCTCGGCC GCGCTCGGCA TGGCGGTCGC CCGCGACCTC
GACGATGCCG AGGCCAAGGC GAAGGGCGAG GCGCCGGGGA AGCGCCGCAA CATGATCGCG
GTGATCGGCG ACGGCTCGAT GTCGGCGGGC ATGGCCTACG AGGCCATGAA CAATGCCGGC
GCGCTGCACT CGCGCCTGAT CGTCATCCTC AACGACAACG ACATGTCGAT CGCGCCCCCC
GTCGGCGCCA TGTCGGCCTA TCTCGCGCGG CTGGCTTCGG GGGGCACCTA CCGGAGCTTA
CGCGAGACCG CCAAGCAACT CGGCAAGCTG CTGCCGAAGG CGCTCTACCA GCGCGCGGCG
GCGGCCGAGG AGTATGCCCG CTCGCTGATC GTCGGCGGCG GCACGATGTT CGAGGAGATG
GGCTTCCACT ATGTGGGGCC GGTCGACGGG CACAACCTCG ACCACCTGCT CCCCGTTCTG
AAGAACGTGC GCGACTCGGA CCAGGGTCCG ATCCTGCTCC ACGTGGTGAC GCAGAAGGGC
AAGGGCTACG CCCCGGCGGA GGCCTCGGCC GACCGCTACC ACGGCGTGGT CAAGTTCGAC
GTGGTCTCAG GCGTGCAGGC CAAGGCCAAG GCGAACGCCC CGGCCTATAC GCGGGTGTTT
GGCGAGAGCC TGATCAAGGC GGCCGATGCC GATCCGAAGG TGGTGGCGAT CACCGCGGCC
ATGCCCGGCG GCACCGGCAT CGACCTGTTC GGCAAGGCGC ATCCGGACAG GACCTTCGAC
GTCGGCATCG CCGAGCAGCA CGCGGTGACC TTTGCCGGCG GTCTGGCGAC CGAGGGCTAC
AAGCCGTTCG TGGCGATCTA CTCGACCTTC CTACAGCGGG CCTACGATCA GGTCGTGCAC
GACGTGGCCT TGCAGAACCT GCCCGTGCGG TTCTGCCTCG ACCGGGCCGG TCTGGTGGGG
GCGGACGGGG CGACCCATGC GGGCGCGTTC GATCTGGCCT ATCTGTGCTG CCTGCCGAAC
ATGACGGTGA TGGCGGCCGC CGACGAGGCC GAGCTGGTGC ACATGGTGGC CACCGCGCAT
GCGCATGACT CGGGGCCGAT CGCCCTGCGC TACCCGCGCG GCGAGGGGGT CGGCGTCGAG
CTGCCGGAGA GCGGCGAGCC GCTGGCCATC GGTCGCGGGC GTGTGGTGCG CCGTCCGGAA
GGGGCGCGGG TGGCGCTTCT GTCGCTGGGC ACGCGCCTGT CGGAGGCTCT GAAGGCGGCC
GACGCGCTGG AGGCGGAGGG TGTTGCGGTG AGCGTGGCGG ATGCGCGCTT TGCCAAGCCG
CTGGATGCCG AGATGATCGT GGATCTGGCC AACAGCCACG AGGTTCTGGT GACGGTGGAG
GAAGGCTCGG TCGGCGGCTT CGGCGCGATG GTGCTGCACC TGTTGTCGGA GCGGGGCGTT
CTGGATGCGG GCCGTGTCCG GGTGCGGACG CTGACGCTGC CGGACGTCTA CCAGGACCAC
GACAAGCCGG AGAAGATGTA CGCCGAGGCC GGTCTCGACG CCGAGGGCAT CCTCAAGGCC
GTCCGCGCCG CCCTGCCGGA CCAGAAGAAG GGCAGTCGGA CCGGACGCCT GCGTCTGGCC
TGA
 
Protein sequence
MKALALADTT ILEGLETPDR LRLLPESELQ RVADAVRAEM IDAVSITGGH LGSGLGVVEL 
TVALHHVFDT PDDRIVWDVG HQCYPHKILT GRRDRIRTLR QGGGLSGFTK RSESEYDPFG
AAHSSTSISA ALGMAVARDL DDAEAKAKGE APGKRRNMIA VIGDGSMSAG MAYEAMNNAG
ALHSRLIVIL NDNDMSIAPP VGAMSAYLAR LASGGTYRSL RETAKQLGKL LPKALYQRAA
AAEEYARSLI VGGGTMFEEM GFHYVGPVDG HNLDHLLPVL KNVRDSDQGP ILLHVVTQKG
KGYAPAEASA DRYHGVVKFD VVSGVQAKAK ANAPAYTRVF GESLIKAADA DPKVVAITAA
MPGGTGIDLF GKAHPDRTFD VGIAEQHAVT FAGGLATEGY KPFVAIYSTF LQRAYDQVVH
DVALQNLPVR FCLDRAGLVG ADGATHAGAF DLAYLCCLPN MTVMAAADEA ELVHMVATAH
AHDSGPIALR YPRGEGVGVE LPESGEPLAI GRGRVVRRPE GARVALLSLG TRLSEALKAA
DALEAEGVAV SVADARFAKP LDAEMIVDLA NSHEVLVTVE EGSVGGFGAM VLHLLSERGV
LDAGRVRVRT LTLPDVYQDH DKPEKMYAEA GLDAEGILKA VRAALPDQKK GSRTGRLRLA