| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_2822 |
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| Symbol | |
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| ID | 3741088 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter metallireducens GS-15 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007517 |
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| Strand | + |
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| Start bp | 3195019 |
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| End bp | 3196926 |
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| Gene Length | 1908 bp |
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| Protein Length | 635 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637780107 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_385765 |
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| Protein GI | 78224018 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.553695 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 0.10664 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTACAAGC TGCTCGACAC CATAACCGGC CCGGCCGATC TCAAGAATAT TCCCCGGGAG
GAGCTCCCGG GGCTGGCAGA TGAAATCCGC CGGTTTCTCA TCGAGACAGT GTCGCAAACG
GGCGGCCATC TGGCCTCGAA CCTGGGGGCA GTGGAGCTCT CCGTCGCCCT CCACTACTGC
TTCGACTCCC CGGCCGACAA GCTCATCTGG GACGTGGGGC ACCAGGCCTA CACCCACAAG
ATCCTCACGG GTCGGCGCGA AAGCTTCCAC ACCCAGCGCC AGTACAAGGG GATCAGCGGC
TTCCCCAAGC GGAGCGAGTC ACCCCACGAC GCCTTCGGGG CCGGCCACTC CTCCACCTCC
ATCTCGGCGG GGCTCGGCAT GGCCGCGGCA CAGGATCTGA AGGGGAGCGG CAGCCGGGCC
ATCGCGGTGA TCGGCGACGG CTCCCTCACC GGCGGCATGG CCTATGAGGC CCTCAACCAG
GCGGGGCACC TGAAGAAAAA CCTGATCGTG GTCCTGAACG ACAACGAGAT GTCCATCTCC
CAAAACGTGG GGGCCTTCTC CTCGTTCGTC TCCCGCAAGA TGACCGGCAG CGACTTCCGC
AAGCTGAAGA AGGAGATGCA GGGCCTTCTG GAGAACATCC CGGCCATCGG GAAGGACATC
CTCCACTTCG CCCGCCGGGC CGAAAACTCC CTCAAGGGGT TCCTCACCCC GGGGATGCTC
TTCGAGGCCC TGGGCTTCGA CTACATCGGC CCGATTCCTG GACACGACCT GCCGCAGCTC
CTGGAGGTCT TCGAGAACGT GAAGGGGCTC GAAGGGCCGG TGCTCGTCCA CGTCATGACC
ACCAAGGGGA AGGGGTACCA GCCGGCCGAG GAGAACCCGG CCGCCTTCCA CGGGGTCGGC
CCCTTCGACG TGGCCACGGG CAAGACCACC GGCGGCAAGC CGGGGGCGGC ATCCTACACC
GGGGTCTTCG GCGCGACCCT CGTGAAGCTG GCCGAGGAGG ACGAGAAGAT CATCGCCATC
ACTGCGGCCA TGCCCGACGG CACCGGCCTC ACCCCCTTCG CGAAACGGTT CCCGGAACGC
TTCTTCGACG TGGGAATTGC CGAGCAGCAC GCCCTCACCT TTGCGGCGGG CCTCGCCGCC
GACGGGTTTC GGCCCGTGAC GGCCATCTAC TCCACCTTCC TCCAGCGGGC CTACGACCAG
GTATTCCATG ATGTCTGCCT CCAGAAACTG CCGGTGACCA TGGCCCTGGA CCGGGGGGGG
CTCGTGGGTG ACGACGGCCC CACCCACCAC GGCACCTTCG ACCTCTCGTA CCTGCGGCAC
CTGCCGGAGA TGACCCTCAT GGCCCCCAAG GACGAGAACG AGCTCCAGCA CATGCTGAAG
ACCGCCATCT ACGCCGGCCG CCCCGTGGCG CTCCGCTACC CCCGTGGTGC CGGGTATGGA
CTTCCCCTTG ACCAGACTAT CCAGTCCCTG GAGATCGGCC GGGGCGAGCT TCTGACTGAA
GGGGACGATG TCGCCATCGT GGCCATCGGT TCCACGGTCT ATCCGGCCCA GGAGGCAGCG
AAGCTCCTGG AAGCTAGGGG GATCCGGGCA ACGGTGGTCA ACGCCCGCTT CGTGAAACCC
CTTGACCGGG AGCTCATCCT CGGCGCGGCA CGGCGGACCG GGTGCATCGT CACCGTGGAG
GAGAACGCCC TCCAGGGAGG CTTCGGGAGC GCCGTCCTGG AGTTGCTGGC GGACGAAGGG
ATGACCGATG TGCGGGCCAA GCGGATCGGT ATCCCCGACC GCTTCATCGA GCAGGGGCCC
CAACCCCAGC TTCGCAAGGA TCTGGGCCTG GACGGCGCCG GCATCGCCGC CACCGTCGAG
GCATTTCTGA CTGCAAAAGG ACAAGCGGCG CTGTCGCTGG TGAAATAA
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| Protein sequence | MYKLLDTITG PADLKNIPRE ELPGLADEIR RFLIETVSQT GGHLASNLGA VELSVALHYC
FDSPADKLIW DVGHQAYTHK ILTGRRESFH TQRQYKGISG FPKRSESPHD AFGAGHSSTS
ISAGLGMAAA QDLKGSGSRA IAVIGDGSLT GGMAYEALNQ AGHLKKNLIV VLNDNEMSIS
QNVGAFSSFV SRKMTGSDFR KLKKEMQGLL ENIPAIGKDI LHFARRAENS LKGFLTPGML
FEALGFDYIG PIPGHDLPQL LEVFENVKGL EGPVLVHVMT TKGKGYQPAE ENPAAFHGVG
PFDVATGKTT GGKPGAASYT GVFGATLVKL AEEDEKIIAI TAAMPDGTGL TPFAKRFPER
FFDVGIAEQH ALTFAAGLAA DGFRPVTAIY STFLQRAYDQ VFHDVCLQKL PVTMALDRGG
LVGDDGPTHH GTFDLSYLRH LPEMTLMAPK DENELQHMLK TAIYAGRPVA LRYPRGAGYG
LPLDQTIQSL EIGRGELLTE GDDVAIVAIG STVYPAQEAA KLLEARGIRA TVVNARFVKP
LDRELILGAA RRTGCIVTVE ENALQGGFGS AVLELLADEG MTDVRAKRIG IPDRFIEQGP
QPQLRKDLGL DGAGIAATVE AFLTAKGQAA LSLVK
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