| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0492 |
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| Symbol | |
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| ID | 5321326 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 536006 |
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| End bp | 537919 |
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| Gene Length | 1914 bp |
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| Protein Length | 637 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640789427 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_001326184 |
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| Protein GI | 150395717 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGGCGA CGCCCTTGCT CGATAAAGTC AGATATCCCG ACGATCTGAA GAAGATCGAC
GATAGGGACC TGCCGCAGCT GGCGGCCGAA CTGCGTGCAG AGATGGTAGA CGCGGTGTCG
CGCACCGGTG GACATCTCGG AGCGGGCCTC GGCGTCGTCG AACTGACGAT CGCCATCCAC
AAGATCTTCG ATACGCCGCA TGACCGATTG ATCTTCGACG TCGGACATCA GTGCTATCCT
CACAAGATCC TGACCGGCCG GCGGGACCGC ATCCGGACAT TGCGCCAGGA AGACGGGCTA
TCGGGCTTTA CCCGGCGGGC GGAAAGCGAA TATGACCCCT TCGGCGCTGC GCATTCCTCC
ACCTCCATCT CGGCAGGTCT CGGCATGGCC GTCGCCGCCG AACTCGATGG GAAAAGCCGA
AATGTGATCG CGGTGATCGG CGATGGCGCC ATGTCGGCCG GCATGGCCTT CGAAGCGCTC
AACAATGCAG GCGCACTCGA TGCCCGCCTT ATCGTCATTC TCAACGACAA CGACATGTCG
ATCGCGCCGC CGACGGGCGC GATGAGCGCA TATCTGGCGC GGCTCGCCTC CGGGCGGACC
TATATGGGCA TTCGCGAGGT CGGCAAGAAG CTCACCGCCT ATCTCGGCAA GACGGTCGAC
CGGGCGATCA CCCGTGCCGT GGAGCATGCC CGAGGCTACG TTACCGGGGG GACGCTTTTC
GAGGAAATGG GTTTCTACCA TATTGGTCCG ATCGACGGTC ATTCCTTCGA TCACCTGCTT
CCCGTCCTGC GCAACGTGCG CGACAACGCA AAGGGGCCGG TCCTGATCCA TGTGGTCACA
CAGAAGGGCA AAGGCTATCC GCCGGCCGAA GCAGCGGCCG ACAAGTATCA TGGCGTCAAC
AAGTTCGACG TGATCACCGG GGCTCAGGCC AAGGCGAAAC CCAACGCCCC GGCCTATACT
TCCGTCTTCG CGGACGCGCT CACGCTCGAG GCGAGCCTCG ACGACAAGAT CGTAGCGATC
ACCGCCGCCA TGCCATCGGG GACAGGGCTG GACAGGTTCG CCTCGGTGCA CCCGTCGCGC
TGCTTCGATG TCGGCATCGC CGAACAGCAT GCCGTGACCT TCGCTGCCGG CCTTGCGGCC
GAAGGGTACA AGCCTTTTGC GGCGCTCTAC TCCACCTTCC TGCAGCGCGC CTACGACCAG
GTGGTCCATG ACGTGGCCAT CCAGGGCTTG CCGGTCCGCT TCCCGATCGA CCGGGCCGGC
TTCGTCGGAG CCGATGGCCC GACCCATGCG GGCTCCTTCG ACACGACCTA CCTTGCCACA
TTGCCGGGAT TCGTCGTGAT GGCGGCGGCC GATGAGGCGG AGCTGAAACA CATGGTGCGC
ACGGCCGCGG CCTACGACGA TGGTCCGATT TCGTTCCGTT ATCCGCGTGG CGAAGGCGTC
GGTGTCGAGT TGCCCGAACG CGGAGAGATT CTCGAGATCG GCAAGGGCCG GGTCATCAAG
CAGGGAAGCA AGGTCGCGCT GCTTTCGTTC GGAACACGGC TTGCCGACTG TCTGTTGGCT
GCCGAAGACC TGGATGCCGC CGGCCTTTCG ACAACTGTGG CCGACGCCCG CTTCGCCAAG
CCGCTCGATC ATGACCTGAT CCGGCAGCTT GCCCGCCATC ACGAGGTTCT GATCACCATC
GAGGAAGGGG CGGTCGGCGG CTTCGCAAGC CACGTTCTGC AGTTTTTGGC CGAAGAAGGC
CTGATCGACG GGGGCCTCAA AGTGCGCCCC ATGATTATGC CCGACGTCTG GATGGAGCAG
GCAAAACCGG AAGCGATGTA TACCCGTGCA GGGCTCGATC GTGCCGGCAT CGTTTCCACT
GTGTTCAAGG CACTCGGCCA GAAACGCGGC GTAGGCCTCG GCGCCGCCGG CTAA
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| Protein sequence | MPATPLLDKV RYPDDLKKID DRDLPQLAAE LRAEMVDAVS RTGGHLGAGL GVVELTIAIH
KIFDTPHDRL IFDVGHQCYP HKILTGRRDR IRTLRQEDGL SGFTRRAESE YDPFGAAHSS
TSISAGLGMA VAAELDGKSR NVIAVIGDGA MSAGMAFEAL NNAGALDARL IVILNDNDMS
IAPPTGAMSA YLARLASGRT YMGIREVGKK LTAYLGKTVD RAITRAVEHA RGYVTGGTLF
EEMGFYHIGP IDGHSFDHLL PVLRNVRDNA KGPVLIHVVT QKGKGYPPAE AAADKYHGVN
KFDVITGAQA KAKPNAPAYT SVFADALTLE ASLDDKIVAI TAAMPSGTGL DRFASVHPSR
CFDVGIAEQH AVTFAAGLAA EGYKPFAALY STFLQRAYDQ VVHDVAIQGL PVRFPIDRAG
FVGADGPTHA GSFDTTYLAT LPGFVVMAAA DEAELKHMVR TAAAYDDGPI SFRYPRGEGV
GVELPERGEI LEIGKGRVIK QGSKVALLSF GTRLADCLLA AEDLDAAGLS TTVADARFAK
PLDHDLIRQL ARHHEVLITI EEGAVGGFAS HVLQFLAEEG LIDGGLKVRP MIMPDVWMEQ
AKPEAMYTRA GLDRAGIVST VFKALGQKRG VGLGAAG
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