More than 300 homologs were found in PanDaTox collection
for query gene Namu_3546 on replicon NC_013235
Organism: Nakamurella multipartita DSM 44233



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013235  Namu_3546  two component transcriptional regulator, LuxR family  100 
 
 
229 aa  437  9.999999999999999e-123  Nakamurella multipartita DSM 44233  Bacteria  decreased coverage  0.00000843196  hitchhiker  0.00749158 
 
 
-
 
NC_013235  Namu_3769  transcriptional regulator, LuxR family  48.6 
 
 
205 aa  142  4e-33  Nakamurella multipartita DSM 44233  Bacteria  normal  0.0158689  normal  0.601222 
 
 
-
 
NC_013093  Amir_1549  two component transcriptional regulator, LuxR family  45.09 
 
 
238 aa  139  3e-32  Actinosynnema mirum DSM 43827  Bacteria  normal  0.196807  n/a   
 
 
-
 
NC_008578  Acel_1390  two component LuxR family transcriptional regulator  44.98 
 
 
225 aa  131  1.0000000000000001e-29  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_1583  two component transcriptional regulator, LuxR family  44.44 
 
 
200 aa  110  1.0000000000000001e-23  Kineococcus radiotolerans SRS30216  Bacteria  decreased coverage  0.00238178  normal  0.469918 
 
 
-
 
NC_013131  Caci_6781  two component transcriptional regulator, LuxR family  39.07 
 
 
232 aa  105  7e-22  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.516576 
 
 
-
 
NC_014151  Cfla_1727  transcriptional regulator, LuxR family  66.13 
 
 
137 aa  83.2  0.000000000000003  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal  0.0510322 
 
 
-
 
NC_010718  Nther_0648  two component transcriptional regulator, LuxR family  35.65 
 
 
215 aa  74.7  0.000000000001  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_0621  two component LuxR family transcriptional regulator  36.45 
 
 
212 aa  71.6  0.000000000009  Caulobacter sp. K31  Bacteria  normal  normal  0.881689 
 
 
-
 
NC_013530  Xcel_0094  two component transcriptional regulator, LuxR family  30.99 
 
 
220 aa  68.9  0.00000000006  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_2443  two component LuxR family transcriptional regulator  52.46 
 
 
215 aa  68.6  0.00000000008  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_1011  two component transcriptional regulator, LuxR family  30.95 
 
 
203 aa  68.2  0.00000000009  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.109267 
 
 
-
 
NC_008726  Mvan_5522  two component LuxR family transcriptional regulator  31.62 
 
 
219 aa  68.2  0.0000000001  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_3231  two component LuxR family transcriptional regulator  30.39 
 
 
209 aa  65.5  0.0000000006  Opitutus terrae PB90-1  Bacteria  normal  0.229823  normal  0.0283688 
 
 
-
 
NC_009921  Franean1_7117  two component LuxR family transcriptional regulator  47.3 
 
 
214 aa  65.5  0.0000000007  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_0346  two component transcriptional regulator, LuxR family  41.35 
 
 
210 aa  64.7  0.000000001  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0205277  normal  0.823307 
 
 
-
 
NC_011071  Smal_2340  two component transcriptional regulator, LuxR family  47.06 
 
 
217 aa  64.3  0.000000001  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.273151  normal 
 
 
-
 
NC_009455  DehaBAV1_1162  two component LuxR family transcriptional regulator  44.26 
 
 
225 aa  64.3  0.000000001  Dehalococcoides sp. BAV1  Bacteria  normal  0.130665  n/a   
 
 
-
 
NC_009719  Plav_1134  two component LuxR family transcriptional regulator  49.18 
 
 
213 aa  64.7  0.000000001  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_013552  DhcVS_1132  DNA-binding response regulator, LuxR family  31.82 
 
 
225 aa  64.3  0.000000002  Dehalococcoides sp. VS  Bacteria  normal  0.893152  n/a   
 
 
-
 
NC_013739  Cwoe_1616  two component transcriptional regulator, LuxR family  42.86 
 
 
229 aa  63.5  0.000000002  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_3748  two component LuxR family transcriptional regulator  47.54 
 
 
211 aa  63.2  0.000000003  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.107866  normal 
 
 
-
 
NC_012669  Bcav_0717  two component transcriptional regulator, LuxR family  39.09 
 
 
209 aa  63.5  0.000000003  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.854815  normal  0.189113 
 
 
-
 
NC_008699  Noca_1020  response regulator receiver  44.12 
 
 
218 aa  62.8  0.000000004  Nocardioides sp. JS614  Bacteria  normal  0.648692  n/a   
 
 
-
 
NC_002936  DET1350  LuxR family DNA-binding response regulator  42.62 
 
 
225 aa  62.8  0.000000005  Dehalococcoides ethenogenes 195  Bacteria  decreased coverage  0.00111586  n/a   
 
 
-
 
NC_011831  Cagg_0020  two component transcriptional regulator, LuxR family  52.46 
 
 
229 aa  62.4  0.000000005  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_013170  Ccur_06630  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  29.63 
 
 
215 aa  62.8  0.000000005  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.252447  normal  0.303532 
 
 
-
 
NC_014151  Cfla_2586  two component transcriptional regulator, LuxR family  52.46 
 
 
223 aa  62.4  0.000000005  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.646343  normal 
 
 
-
 
NC_013235  Namu_0480  two component transcriptional regulator, LuxR family  46.97 
 
 
214 aa  62  0.000000007  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_3839  regulatory protein, LuxR  50 
 
 
268 aa  62  0.000000007  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_1998  two component transcriptional regulator, LuxR family  45.83 
 
 
225 aa  62  0.000000007  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.12496  normal 
 
 
-
 
NC_013947  Snas_0377  transcriptional regulator, LuxR family  45.33 
 
 
134 aa  61.6  0.000000009  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_4229  two component LuxR family transcriptional regulator  50 
 
 
270 aa  61.6  0.000000009  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.104641 
 
 
-
 
NC_009972  Haur_0983  two component LuxR family transcriptional regulator  33.78 
 
 
213 aa  61.2  0.00000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013170  Ccur_01320  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  44 
 
 
261 aa  61.6  0.00000001  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_2088  transcriptional regulator, LuxR family  44.59 
 
 
135 aa  61.2  0.00000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_2557  two component transcriptional regulator, LuxR family  42.11 
 
 
224 aa  60.8  0.00000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.231398  normal  0.0978001 
 
 
-
 
NC_013131  Caci_6049  two component transcriptional regulator, LuxR family  49.32 
 
 
224 aa  60.5  0.00000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.764436  normal 
 
 
-
 
NC_013441  Gbro_2881  response regulator receiver  46.07 
 
 
220 aa  60.5  0.00000002  Gordonia bronchialis DSM 43247  Bacteria  decreased coverage  0.00126066  n/a   
 
 
-
 
NC_011899  Hore_21820  two component transcriptional regulator, LuxR family  44.62 
 
 
211 aa  60.5  0.00000002  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_2811  two component transcriptional regulator, LuxR family  43.68 
 
 
217 aa  60.8  0.00000002  Actinosynnema mirum DSM 43827  Bacteria  normal  0.206772  n/a   
 
 
-
 
NC_013131  Caci_6284  two component transcriptional regulator, LuxR family  41.89 
 
 
217 aa  60.8  0.00000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_2482  two component transcriptional regulator, LuxR family  38.6 
 
 
208 aa  60.1  0.00000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0211915  normal  0.642006 
 
 
-
 
NC_009719  Plav_1148  regulatory protein LuxR  46.27 
 
 
921 aa  60.8  0.00000002  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.108504  normal 
 
 
-
 
NC_013093  Amir_6405  two component transcriptional regulator, LuxR family  42.7 
 
 
225 aa  60.5  0.00000002  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_4976  two component transcriptional regulator, LuxR family  46.77 
 
 
218 aa  60.5  0.00000002  Conexibacter woesei DSM 14684  Bacteria  normal  0.289575  normal  0.034027 
 
 
-
 
NC_013124  Afer_1981  two component transcriptional regulator, LuxR family  32.71 
 
 
222 aa  60.5  0.00000002  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_4745  two component transcriptional regulator, LuxR family  48.39 
 
 
209 aa  60.1  0.00000003  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_5070  two component transcriptional regulator, LuxR family  40 
 
 
210 aa  60.1  0.00000003  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.744929 
 
 
-
 
NC_013595  Sros_5304  response regulator receiver protein  45.21 
 
 
220 aa  59.7  0.00000003  Streptosporangium roseum DSM 43021  Bacteria  normal  0.128918  normal 
 
 
-
 
NC_013235  Namu_3387  two component transcriptional regulator, LuxR family  48 
 
 
223 aa  60.1  0.00000003  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.0000386408  hitchhiker  0.000570848 
 
 
-
 
NC_013411  GYMC61_3240  two component transcriptional regulator, LuxR family  45.16 
 
 
224 aa  60.1  0.00000003  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_012793  GWCH70_3043  two component transcriptional regulator, LuxR family  45.16 
 
 
225 aa  60.1  0.00000003  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000652561  n/a   
 
 
-
 
NC_013235  Namu_1210  two component transcriptional regulator, LuxR family  50 
 
 
198 aa  60.1  0.00000003  Nakamurella multipartita DSM 44233  Bacteria  normal  0.292938  normal 
 
 
-
 
NC_013093  Amir_5376  transcriptional regulator, LuxR family  31.33 
 
 
213 aa  60.1  0.00000003  Actinosynnema mirum DSM 43827  Bacteria  normal  0.416669  n/a   
 
 
-
 
NC_009921  Franean1_3185  two component LuxR family transcriptional regulator  48.57 
 
 
223 aa  60.1  0.00000003  Frankia sp. EAN1pec  Bacteria  normal  0.704721  normal 
 
 
-
 
NC_013947  Snas_1088  transcriptional regulator, LuxR family  45.9 
 
 
207 aa  59.3  0.00000004  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_6962  two component transcriptional regulator, LuxR family  46.77 
 
 
234 aa  59.7  0.00000004  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_1951  two component transcriptional regulator, LuxR family  43.37 
 
 
226 aa  59.7  0.00000004  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.0924411 
 
 
-
 
NC_013947  Snas_0966  transcriptional regulator, LuxR family  47.62 
 
 
134 aa  59.3  0.00000004  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.159258  normal 
 
 
-
 
NC_013411  GYMC61_1316  two component transcriptional regulator, LuxR family  30.43 
 
 
210 aa  59.7  0.00000004  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013947  Snas_1473  transcriptional regulator, LuxR family  41.27 
 
 
203 aa  59.7  0.00000004  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.569189  normal 
 
 
-
 
NC_013595  Sros_0553  response regulator receiver protein  37.4 
 
 
213 aa  59.3  0.00000005  Streptosporangium roseum DSM 43021  Bacteria  normal  0.82888  normal 
 
 
-
 
NC_013131  Caci_0637  two component transcriptional regulator, LuxR family  46.58 
 
 
229 aa  59.3  0.00000005  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.565019 
 
 
-
 
NC_013159  Svir_04700  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  48.39 
 
 
198 aa  59.3  0.00000005  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.162406  normal 
 
 
-
 
NC_013947  Snas_5235  transcriptional regulator, LuxR family  44.59 
 
 
134 aa  59.3  0.00000005  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.183919  normal  0.452557 
 
 
-
 
NC_011831  Cagg_2575  ATP-dependent transcriptional regulator, MalT-like, LuxR family  46.58 
 
 
917 aa  58.9  0.00000006  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_4428  two component LuxR family transcriptional regulator  50.82 
 
 
231 aa  58.9  0.00000006  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_1532  two component transcriptional regulator, LuxR family  34.71 
 
 
220 aa  58.5  0.00000007  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0114765  n/a   
 
 
-
 
NC_013595  Sros_3244  response regulator receiver protein  38.75 
 
 
218 aa  58.9  0.00000007  Streptosporangium roseum DSM 43021  Bacteria  hitchhiker  0.000568428  normal  0.332742 
 
 
-
 
NC_013159  Svir_38740  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  45.9 
 
 
250 aa  58.9  0.00000007  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_1846  LuxR family two component transcriptional regulator  43.28 
 
 
226 aa  58.9  0.00000007  Thermobispora bispora DSM 43833  Bacteria  normal  0.699471  normal 
 
 
-
 
NC_010682  Rpic_3729  two component transcriptional regulator, LuxR family  31.06 
 
 
214 aa  58.5  0.00000008  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_3745  two component transcriptional regulator, LuxR family  32.26 
 
 
235 aa  58.5  0.00000008  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.627677  normal  0.255424 
 
 
-
 
NC_009674  Bcer98_1160  two component LuxR family transcriptional regulator  41.94 
 
 
210 aa  58.5  0.00000008  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  30.82 
 
 
224 aa  58.2  0.00000009  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011769  DvMF_1021  two component transcriptional regulator, LuxR family  29.91 
 
 
216 aa  58.2  0.00000009  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.794365 
 
 
-
 
NC_009953  Sare_4860  two component LuxR family transcriptional regulator  38.05 
 
 
219 aa  57.8  0.0000001  Salinispora arenicola CNS-205  Bacteria  normal  0.452521  normal  0.0798716 
 
 
-
 
NC_007492  Pfl01_4706  ATP-dependent transcription regulator LuxR  44.16 
 
 
911 aa  58.2  0.0000001  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.157543 
 
 
-
 
NC_012856  Rpic12D_3406  two component transcriptional regulator, LuxR family  31.06 
 
 
214 aa  57.8  0.0000001  Ralstonia pickettii 12D  Bacteria  normal  0.588591  normal 
 
 
-
 
NC_013093  Amir_0513  two component transcriptional regulator, LuxR family  50.82 
 
 
209 aa  57.8  0.0000001  Actinosynnema mirum DSM 43827  Bacteria  normal  0.52986  n/a   
 
 
-
 
NC_013093  Amir_6539  two component transcriptional regulator, LuxR family  46.77 
 
 
198 aa  58.2  0.0000001  Actinosynnema mirum DSM 43827  Bacteria  normal  0.370011  n/a   
 
 
-
 
NC_007760  Adeh_1997  two component LuxR family transcriptional regulator  41.33 
 
 
218 aa  58.2  0.0000001  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_1966  two component transcriptional regulator, LuxR family  41.33 
 
 
218 aa  58.2  0.0000001  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_0160  two component LuxR family transcriptional regulator  52.46 
 
 
212 aa  58.2  0.0000001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_2359  two component transcriptional regulator, LuxR family  50.82 
 
 
247 aa  58.2  0.0000001  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0990205  decreased coverage  0.00133027 
 
 
-
 
NC_013595  Sros_2533  response regulator receiver protein  43.48 
 
 
220 aa  57.8  0.0000001  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.495874 
 
 
-
 
NC_011145  AnaeK_1881  two component transcriptional regulator, LuxR family  41.33 
 
 
218 aa  58.2  0.0000001  Anaeromyxobacter sp. K  Bacteria  normal  0.0160211  n/a   
 
 
-
 
NC_013739  Cwoe_3988  two component transcriptional regulator, LuxR family  44.78 
 
 
228 aa  57.8  0.0000001  Conexibacter woesei DSM 14684  Bacteria  normal  0.0354189  normal  0.736565 
 
 
-
 
NC_008820  P9303_26831  LuxR transcriptional regulator  41.43 
 
 
92 aa  58.2  0.0000001  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal 
 
 
-
 
NC_009523  RoseRS_4323  two component LuxR family transcriptional regulator  49.18 
 
 
246 aa  57.8  0.0000001  Roseiflexus sp. RS-1  Bacteria  normal  0.239635  normal  0.317944 
 
 
-
 
NC_013947  Snas_4479  two component transcriptional regulator, LuxR family  40 
 
 
224 aa  57.8  0.0000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.518456  normal  0.598935 
 
 
-
 
NC_013521  Sked_03540  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  45.31 
 
 
226 aa  57.4  0.0000002  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3789  response regulator receiver  35.82 
 
 
228 aa  57.4  0.0000002  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0916709 
 
 
-
 
NC_013757  Gobs_4449  two component transcriptional regulator, LuxR family  40.48 
 
 
253 aa  57.4  0.0000002  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_0340  two component transcriptional regulator, LuxR family  29.3 
 
 
217 aa  57.4  0.0000002  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00614189  hitchhiker  0.00317709 
 
 
-
 
NC_013131  Caci_3748  two component transcriptional regulator, LuxR family  51.67 
 
 
236 aa  57  0.0000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_5428  two component transcriptional regulator, LuxR family  40.48 
 
 
201 aa  57  0.0000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.358603 
 
 
-
 
NC_009338  Mflv_5014  two component LuxR family transcriptional regulator  30.37 
 
 
209 aa  57.4  0.0000002  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.103708  normal  0.29037 
 
 
-
 
NC_009921  Franean1_4684  two component LuxR family transcriptional regulator  42.86 
 
 
223 aa  57.4  0.0000002  Frankia sp. EAN1pec  Bacteria  normal  0.51425  normal 
 
 
-
 
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