More than 300 homologs were found in PanDaTox collection
for query gene Gobs_4449 on replicon NC_013757
Organism: Geodermatophilus obscurus DSM 43160



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013757  Gobs_4449  two component transcriptional regulator, LuxR family  100 
 
 
253 aa  499  1e-140  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_1210  two component transcriptional regulator, LuxR family  40.24 
 
 
198 aa  160  1e-38  Nakamurella multipartita DSM 44233  Bacteria  normal  0.292938  normal 
 
 
-
 
NC_013093  Amir_6539  two component transcriptional regulator, LuxR family  43.15 
 
 
198 aa  158  9e-38  Actinosynnema mirum DSM 43827  Bacteria  normal  0.370011  n/a   
 
 
-
 
NC_013159  Svir_04700  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  43.1 
 
 
198 aa  157  2e-37  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.162406  normal 
 
 
-
 
NC_008578  Acel_0365  two component LuxR family transcriptional regulator  35.29 
 
 
199 aa  120  3e-26  Acidothermus cellulolyticus 11B  Bacteria  normal  0.210231  normal  0.243335 
 
 
-
 
NC_009953  Sare_4229  two component LuxR family transcriptional regulator  38.36 
 
 
270 aa  117  1.9999999999999998e-25  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.104641 
 
 
-
 
NC_009380  Strop_3839  regulatory protein, LuxR  38.26 
 
 
268 aa  113  2.0000000000000002e-24  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_0739  two component transcriptional regulator, LuxR family  38.24 
 
 
204 aa  113  3e-24  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.297506  normal  0.226729 
 
 
-
 
NC_014151  Cfla_2586  two component transcriptional regulator, LuxR family  39.22 
 
 
223 aa  112  7.000000000000001e-24  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.646343  normal 
 
 
-
 
NC_013131  Caci_1011  two component transcriptional regulator, LuxR family  34.58 
 
 
203 aa  111  1.0000000000000001e-23  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.109267 
 
 
-
 
NC_013947  Snas_1088  transcriptional regulator, LuxR family  76.56 
 
 
207 aa  103  2e-21  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_3040  two component transcriptional regulator, LuxR family  35.66 
 
 
224 aa  99  6e-20  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0154763  normal 
 
 
-
 
NC_013757  Gobs_1030  two component transcriptional regulator, LuxR family  32.5 
 
 
212 aa  94  2e-18  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_2088  transcriptional regulator, LuxR family  60.81 
 
 
135 aa  92.4  7e-18  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_0966  transcriptional regulator, LuxR family  58.44 
 
 
134 aa  92  8e-18  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.159258  normal 
 
 
-
 
NC_013947  Snas_5235  transcriptional regulator, LuxR family  56.58 
 
 
134 aa  91.3  1e-17  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.183919  normal  0.452557 
 
 
-
 
NC_013947  Snas_0377  transcriptional regulator, LuxR family  60.81 
 
 
134 aa  90.9  2e-17  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_5412  transcriptional regulator, LuxR family  55.95 
 
 
155 aa  90.1  3e-17  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.207706  normal  0.221863 
 
 
-
 
NC_013595  Sros_1684  response regulator receiver protein  32.08 
 
 
207 aa  89.4  5e-17  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.966789 
 
 
-
 
NC_013131  Caci_0637  two component transcriptional regulator, LuxR family  31.95 
 
 
229 aa  89.4  6e-17  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.565019 
 
 
-
 
NC_008148  Rxyl_1550  two component LuxR family transcriptional regulator  32.09 
 
 
220 aa  87  2e-16  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_21820  two component transcriptional regulator, LuxR family  26.67 
 
 
211 aa  87.4  2e-16  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_014211  Ndas_4922  two component transcriptional regulator, LuxR family  34.16 
 
 
206 aa  86.3  4e-16  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0302523  normal 
 
 
-
 
NC_013411  GYMC61_3240  two component transcriptional regulator, LuxR family  30.49 
 
 
224 aa  85.9  6e-16  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013947  Snas_4314  transcriptional regulator, LuxR family  62.9 
 
 
132 aa  85.5  8e-16  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_014158  Tpau_2872  two component transcriptional regulator, LuxR family  31.15 
 
 
218 aa  84.7  0.000000000000001  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_2342  response regulator receiver  32.77 
 
 
212 aa  85.1  0.000000000000001  Gordonia bronchialis DSM 43247  Bacteria  normal  0.88989  n/a   
 
 
-
 
NC_013235  Namu_0487  two component transcriptional regulator, LuxR family  31.68 
 
 
215 aa  83.6  0.000000000000003  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_3421  two component LuxR family transcriptional regulator  30.26 
 
 
223 aa  83.6  0.000000000000003  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0556432 
 
 
-
 
NC_009972  Haur_4778  two component LuxR family transcriptional regulator  29.58 
 
 
208 aa  83.6  0.000000000000003  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.00000269792  n/a   
 
 
-
 
NC_013131  Caci_6980  two component transcriptional regulator, LuxR family  30.2 
 
 
213 aa  83.2  0.000000000000004  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.999676 
 
 
-
 
NC_009972  Haur_1600  two component LuxR family transcriptional regulator  30.29 
 
 
207 aa  82.4  0.000000000000006  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_1473  transcriptional regulator, LuxR family  60.66 
 
 
203 aa  80.9  0.00000000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.569189  normal 
 
 
-
 
NC_010571  Oter_1284  two component LuxR family transcriptional regulator  30.67 
 
 
209 aa  80.9  0.00000000000002  Opitutus terrae PB90-1  Bacteria  normal  0.479266  normal 
 
 
-
 
NC_009664  Krad_1998  two component transcriptional regulator, LuxR family  30.54 
 
 
225 aa  80.9  0.00000000000002  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.12496  normal 
 
 
-
 
NC_012669  Bcav_0717  two component transcriptional regulator, LuxR family  31.28 
 
 
209 aa  80.5  0.00000000000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.854815  normal  0.189113 
 
 
-
 
NC_013235  Namu_4745  two component transcriptional regulator, LuxR family  50 
 
 
209 aa  80.9  0.00000000000002  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_1651  two component transcriptional regulator, LuxR family  31.67 
 
 
218 aa  80.1  0.00000000000003  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.000163278  n/a   
 
 
-
 
NC_012669  Bcav_3541  two component transcriptional regulator, LuxR family  32.51 
 
 
211 aa  80.1  0.00000000000003  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.485125  normal  0.513005 
 
 
-
 
NC_013947  Snas_2579  two component transcriptional regulator, LuxR family  30.08 
 
 
213 aa  79.7  0.00000000000004  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.0500394 
 
 
-
 
NC_007644  Moth_0975  two component LuxR family transcriptional regulator  28.51 
 
 
222 aa  79  0.00000000000006  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_00210  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  30.2 
 
 
221 aa  79  0.00000000000006  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.133182 
 
 
-
 
NC_008699  Noca_1020  response regulator receiver  29.2 
 
 
218 aa  79.3  0.00000000000006  Nocardioides sp. JS614  Bacteria  normal  0.648692  n/a   
 
 
-
 
NC_009455  DehaBAV1_1162  two component LuxR family transcriptional regulator  29.06 
 
 
225 aa  79  0.00000000000006  Dehalococcoides sp. BAV1  Bacteria  normal  0.130665  n/a   
 
 
-
 
NC_013131  Caci_7346  two component transcriptional regulator, LuxR family  33.47 
 
 
211 aa  79  0.00000000000007  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.0451998 
 
 
-
 
NC_011831  Cagg_2804  two component transcriptional regulator, LuxR family  34.05 
 
 
216 aa  77.8  0.0000000000001  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.995251  normal  0.311692 
 
 
-
 
NC_008578  Acel_1390  two component LuxR family transcriptional regulator  34.02 
 
 
225 aa  78.2  0.0000000000001  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_013552  DhcVS_1132  DNA-binding response regulator, LuxR family  28.85 
 
 
225 aa  77.8  0.0000000000001  Dehalococcoides sp. VS  Bacteria  normal  0.893152  n/a   
 
 
-
 
NC_013131  Caci_8900  two component transcriptional regulator, LuxR family  33.2 
 
 
221 aa  77.4  0.0000000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.967084  normal 
 
 
-
 
NC_013595  Sros_1417  response regulator receiver protein  30.88 
 
 
234 aa  77.8  0.0000000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0224272 
 
 
-
 
NC_011884  Cyan7425_1929  two component transcriptional regulator, LuxR family  28.87 
 
 
209 aa  77.8  0.0000000000002  Cyanothece sp. PCC 7425  Bacteria  normal  0.142226  normal 
 
 
-
 
NC_009767  Rcas_1142  two component LuxR family transcriptional regulator  29.49 
 
 
222 aa  77.4  0.0000000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.661777  normal 
 
 
-
 
NC_013131  Caci_0175  two component transcriptional regulator, LuxR family  30.2 
 
 
222 aa  76.6  0.0000000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_3244  response regulator receiver protein  31.3 
 
 
218 aa  76.6  0.0000000000004  Streptosporangium roseum DSM 43021  Bacteria  hitchhiker  0.000568428  normal  0.332742 
 
 
-
 
NC_009719  Plav_1134  two component LuxR family transcriptional regulator  26.58 
 
 
213 aa  76.3  0.0000000000004  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_6235  two component transcriptional regulator, LuxR family  33.33 
 
 
215 aa  76.6  0.0000000000004  Actinosynnema mirum DSM 43827  Bacteria  normal  0.502704  n/a   
 
 
-
 
NC_013131  Caci_7589  two component transcriptional regulator, LuxR family  27.83 
 
 
225 aa  76.3  0.0000000000005  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.438424  normal  0.37363 
 
 
-
 
NC_007413  Ava_4096  two component LuxR family transcriptional regulator  30.04 
 
 
237 aa  76.3  0.0000000000005  Anabaena variabilis ATCC 29413  Bacteria  normal  0.811447  normal  0.807841 
 
 
-
 
NC_008148  Rxyl_0160  two component LuxR family transcriptional regulator  30.41 
 
 
212 aa  76.3  0.0000000000005  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_0973  two component LuxR family transcriptional regulator  29.63 
 
 
216 aa  76.3  0.0000000000005  Acidothermus cellulolyticus 11B  Bacteria  normal  0.255067  normal  0.404517 
 
 
-
 
NC_013757  Gobs_4001  two component transcriptional regulator, LuxR family  29.79 
 
 
236 aa  76.3  0.0000000000005  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_2325  two component transcriptional regulator, LuxR family  25.76 
 
 
228 aa  76.3  0.0000000000005  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_4134  two component LuxR family transcriptional regulator  29.58 
 
 
250 aa  75.9  0.0000000000006  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_3238  regulatory protein LuxR  30.16 
 
 
228 aa  75.9  0.0000000000006  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_03540  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  31.08 
 
 
226 aa  75.9  0.0000000000006  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_20460  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  31.46 
 
 
229 aa  75.9  0.0000000000006  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0212792  n/a   
 
 
-
 
NC_013530  Xcel_0606  two component transcriptional regulator, LuxR family  32.51 
 
 
212 aa  75.5  0.0000000000007  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_1071  two component LuxR family transcriptional regulator  29.46 
 
 
209 aa  75.5  0.0000000000007  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_0775  LuxR family two component transcriptional regulator  29.39 
 
 
234 aa  75.5  0.0000000000007  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.336237 
 
 
-
 
NC_002936  DET1350  LuxR family DNA-binding response regulator  28.85 
 
 
225 aa  75.5  0.0000000000008  Dehalococcoides ethenogenes 195  Bacteria  decreased coverage  0.00111586  n/a   
 
 
-
 
NC_014212  Mesil_1051  two component transcriptional regulator, LuxR family  34.52 
 
 
211 aa  75.5  0.0000000000008  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.0337978 
 
 
-
 
NC_014151  Cfla_2842  two component transcriptional regulator, LuxR family  32.74 
 
 
226 aa  75.5  0.0000000000008  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.622781  decreased coverage  0.00305681 
 
 
-
 
NC_013510  Tcur_4038  two component transcriptional regulator, LuxR family  28.57 
 
 
253 aa  75.1  0.0000000000009  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_2822  two component transcriptional regulator, LuxR family  28.4 
 
 
231 aa  75.5  0.0000000000009  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.311075  normal 
 
 
-
 
NC_013124  Afer_0180  two component transcriptional regulator, LuxR family  30.23 
 
 
216 aa  75.1  0.000000000001  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  0.245465  n/a   
 
 
-
 
NC_014210  Ndas_0346  two component transcriptional regulator, LuxR family  32.51 
 
 
210 aa  74.7  0.000000000001  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0205277  normal  0.823307 
 
 
-
 
NC_013595  Sros_0827  response regulator receiver protein  28.27 
 
 
217 aa  73.9  0.000000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_2028  two component LuxR family transcriptional regulator  27.83 
 
 
219 aa  74.3  0.000000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  0.515359  normal 
 
 
-
 
NC_014248  Aazo_0236  LuxR family two component transcriptional regulator  29.1 
 
 
218 aa  73.9  0.000000000002  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_2658  two component transcriptional regulator, LuxR family  28.27 
 
 
215 aa  74.3  0.000000000002  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_1316  two component transcriptional regulator, LuxR family  27.24 
 
 
210 aa  74.3  0.000000000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013235  Namu_0765  two component transcriptional regulator, LuxR family  32.11 
 
 
222 aa  73.6  0.000000000003  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_3043  two component transcriptional regulator, LuxR family  26.07 
 
 
225 aa  73.6  0.000000000003  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000652561  n/a   
 
 
-
 
NC_009487  SaurJH9_1902  two component LuxR family transcriptional regulator  26.01 
 
 
207 aa  73.6  0.000000000003  Staphylococcus aureus subsp. aureus JH9  Bacteria  hitchhiker  0.00000041006  n/a   
 
 
-
 
NC_009632  SaurJH1_1936  response regulator receiver  26.01 
 
 
207 aa  73.6  0.000000000003  Staphylococcus aureus subsp. aureus JH1  Bacteria  unclonable  0.000000150819  n/a   
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  29.74 
 
 
224 aa  72.8  0.000000000004  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_012791  Vapar_0939  two component transcriptional regulator, LuxR family  32.75 
 
 
247 aa  73.2  0.000000000004  Variovorax paradoxus S110  Bacteria  normal  0.224899  n/a   
 
 
-
 
NC_013595  Sros_0553  response regulator receiver protein  30.6 
 
 
213 aa  73.2  0.000000000004  Streptosporangium roseum DSM 43021  Bacteria  normal  0.82888  normal 
 
 
-
 
NC_009523  RoseRS_1984  two component LuxR family transcriptional regulator  27.83 
 
 
220 aa  73.2  0.000000000004  Roseiflexus sp. RS-1  Bacteria  normal  0.178457  normal  0.123783 
 
 
-
 
NC_010524  Lcho_1782  two component LuxR family transcriptional regulator  29.11 
 
 
214 aa  72.8  0.000000000005  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000000360675 
 
 
-
 
NC_008726  Mvan_5474  two component LuxR family transcriptional regulator  31.48 
 
 
212 aa  72.8  0.000000000005  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.344108  normal  0.73382 
 
 
-
 
NC_013739  Cwoe_1616  two component transcriptional regulator, LuxR family  32.24 
 
 
229 aa  72.8  0.000000000005  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013441  Gbro_1936  regulatory protein LuxR  29.55 
 
 
218 aa  72.8  0.000000000005  Gordonia bronchialis DSM 43247  Bacteria  normal  0.548655  n/a   
 
 
-
 
NC_010682  Rpic_3729  two component transcriptional regulator, LuxR family  29.96 
 
 
214 aa  72.4  0.000000000006  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_1549  two component transcriptional regulator, LuxR family  31.95 
 
 
238 aa  72.4  0.000000000006  Actinosynnema mirum DSM 43827  Bacteria  normal  0.196807  n/a   
 
 
-
 
NC_012856  Rpic12D_3406  two component transcriptional regulator, LuxR family  29.96 
 
 
214 aa  72.4  0.000000000006  Ralstonia pickettii 12D  Bacteria  normal  0.588591  normal 
 
 
-
 
NC_007777  Francci3_1039  two component LuxR family transcriptional regulator  28.57 
 
 
238 aa  72.4  0.000000000007  Frankia sp. CcI3  Bacteria  normal  normal  0.135118 
 
 
-
 
NC_002976  SERP1384  LuxR family DNA-binding response regulator  24.04 
 
 
207 aa  72  0.000000000008  Staphylococcus epidermidis RP62A  Bacteria  hitchhiker  0.000639089  n/a   
 
 
-
 
NC_007513  Syncc9902_1600  LuxR family transcriptional regulator  30.24 
 
 
227 aa  72  0.000000000008  Synechococcus sp. CC9902  Bacteria  normal  0.240626  n/a   
 
 
-
 
NC_013441  Gbro_2881  response regulator receiver  31.08 
 
 
220 aa  72  0.000000000008  Gordonia bronchialis DSM 43247  Bacteria  decreased coverage  0.00126066  n/a   
 
 
-
 
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