More than 300 homologs were found in PanDaTox collection
for query gene Snas_5235 on replicon NC_013947
Organism: Stackebrandtia nassauensis DSM 44728



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013947  Snas_5235  transcriptional regulator, LuxR family  100 
 
 
134 aa  266  5e-71  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.183919  normal  0.452557 
 
 
-
 
NC_013947  Snas_0377  transcriptional regulator, LuxR family  84.33 
 
 
134 aa  226  6e-59  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_2088  transcriptional regulator, LuxR family  83.46 
 
 
135 aa  224  4e-58  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_0966  transcriptional regulator, LuxR family  82.71 
 
 
134 aa  223  6e-58  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.159258  normal 
 
 
-
 
NC_009380  Strop_3839  regulatory protein, LuxR  75.81 
 
 
268 aa  102  2e-21  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_4229  two component LuxR family transcriptional regulator  75.81 
 
 
270 aa  102  2e-21  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.104641 
 
 
-
 
NC_013947  Snas_1088  transcriptional regulator, LuxR family  73.02 
 
 
207 aa  101  3e-21  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_4314  transcriptional regulator, LuxR family  52.63 
 
 
132 aa  98.2  4e-20  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_5412  transcriptional regulator, LuxR family  46.97 
 
 
155 aa  98.2  4e-20  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.207706  normal  0.221863 
 
 
-
 
NC_013235  Namu_1210  two component transcriptional regulator, LuxR family  58.14 
 
 
198 aa  91.7  3e-18  Nakamurella multipartita DSM 44233  Bacteria  normal  0.292938  normal 
 
 
-
 
NC_013757  Gobs_4449  two component transcriptional regulator, LuxR family  56.58 
 
 
253 aa  91.3  4e-18  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_1011  two component transcriptional regulator, LuxR family  67.21 
 
 
203 aa  89  2e-17  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.109267 
 
 
-
 
NC_013093  Amir_6539  two component transcriptional regulator, LuxR family  62.9 
 
 
198 aa  87  8e-17  Actinosynnema mirum DSM 43827  Bacteria  normal  0.370011  n/a   
 
 
-
 
NC_013159  Svir_04700  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  63.93 
 
 
198 aa  86.7  1e-16  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.162406  normal 
 
 
-
 
NC_009664  Krad_0739  two component transcriptional regulator, LuxR family  65.57 
 
 
204 aa  85.1  3e-16  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.297506  normal  0.226729 
 
 
-
 
NC_014151  Cfla_2586  two component transcriptional regulator, LuxR family  62.3 
 
 
223 aa  82  0.000000000000002  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.646343  normal 
 
 
-
 
NC_008578  Acel_0365  two component LuxR family transcriptional regulator  55.26 
 
 
199 aa  82.4  0.000000000000002  Acidothermus cellulolyticus 11B  Bacteria  normal  0.210231  normal  0.243335 
 
 
-
 
NC_013947  Snas_3040  two component transcriptional regulator, LuxR family  53.33 
 
 
224 aa  78.2  0.00000000000003  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0154763  normal 
 
 
-
 
NC_013947  Snas_1473  transcriptional regulator, LuxR family  59.68 
 
 
203 aa  78.6  0.00000000000003  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.569189  normal 
 
 
-
 
NC_013235  Namu_4745  two component transcriptional regulator, LuxR family  53.62 
 
 
209 aa  74.3  0.0000000000005  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_014158  Tpau_2872  two component transcriptional regulator, LuxR family  49.33 
 
 
218 aa  72.8  0.000000000001  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_1020  response regulator receiver  50 
 
 
218 aa  72.4  0.000000000002  Nocardioides sp. JS614  Bacteria  normal  0.648692  n/a   
 
 
-
 
NC_013172  Bfae_20460  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  45.05 
 
 
229 aa  71.2  0.000000000004  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0212792  n/a   
 
 
-
 
NC_013595  Sros_1684  response regulator receiver protein  50 
 
 
207 aa  70.1  0.000000000009  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.966789 
 
 
-
 
NC_013757  Gobs_4001  two component transcriptional regulator, LuxR family  62.26 
 
 
236 aa  70.1  0.00000000001  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_0199  response regulator receiver protein  50.75 
 
 
213 aa  69.7  0.00000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_0608  two component transcriptional regulator, LuxR family  50 
 
 
228 aa  69.7  0.00000000001  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_1134  two component LuxR family transcriptional regulator  39.53 
 
 
213 aa  70.1  0.00000000001  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_2842  two component transcriptional regulator, LuxR family  54.69 
 
 
226 aa  69.3  0.00000000002  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.622781  decreased coverage  0.00305681 
 
 
-
 
NC_013174  Jden_1873  two component transcriptional regulator, LuxR family  54.1 
 
 
233 aa  68.9  0.00000000002  Jonesia denitrificans DSM 20603  Bacteria  normal  0.145213  normal  0.385799 
 
 
-
 
NC_012669  Bcav_1820  two component transcriptional regulator, LuxR family  57.38 
 
 
216 aa  68.6  0.00000000003  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.677493  normal  0.0923177 
 
 
-
 
NC_013159  Svir_38740  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  54.1 
 
 
250 aa  68.2  0.00000000004  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_2391  two component transcriptional regulator, LuxR family  52.46 
 
 
239 aa  68.2  0.00000000004  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0696687  hitchhiker  0.00128542 
 
 
-
 
NC_007333  Tfu_2278  LuxR response regulator receiver  44.21 
 
 
217 aa  67.8  0.00000000005  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_3238  regulatory protein LuxR  56.67 
 
 
228 aa  67.4  0.00000000006  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_2822  two component transcriptional regulator, LuxR family  49.25 
 
 
231 aa  67.8  0.00000000006  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.311075  normal 
 
 
-
 
NC_013235  Namu_0480  two component transcriptional regulator, LuxR family  49.33 
 
 
214 aa  67.4  0.00000000007  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_32990  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  42.22 
 
 
217 aa  67  0.00000000007  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.227707 
 
 
-
 
NC_013530  Xcel_0606  two component transcriptional regulator, LuxR family  55.71 
 
 
212 aa  67  0.00000000008  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_7843  two component transcriptional regulator, LuxR family  48 
 
 
231 aa  67  0.00000000009  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.176081 
 
 
-
 
NC_013131  Caci_0175  two component transcriptional regulator, LuxR family  55.74 
 
 
222 aa  66.2  0.0000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_4163  two component transcriptional regulator, LuxR family  43.68 
 
 
208 aa  66.2  0.0000000001  Conexibacter woesei DSM 14684  Bacteria  normal  0.296115  normal  0.698078 
 
 
-
 
NC_013441  Gbro_2342  response regulator receiver  54.1 
 
 
212 aa  66.2  0.0000000001  Gordonia bronchialis DSM 43247  Bacteria  normal  0.88989  n/a   
 
 
-
 
NC_013235  Namu_0487  two component transcriptional regulator, LuxR family  55.74 
 
 
215 aa  66.2  0.0000000001  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_8412  two component transcriptional regulator, LuxR family  52.46 
 
 
239 aa  65.9  0.0000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_6235  two component transcriptional regulator, LuxR family  47.89 
 
 
215 aa  65.5  0.0000000002  Actinosynnema mirum DSM 43827  Bacteria  normal  0.502704  n/a   
 
 
-
 
NC_013510  Tcur_1253  two component transcriptional regulator, LuxR family  55.36 
 
 
203 aa  65.9  0.0000000002  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_1056  two component LuxR family transcriptional regulator  54.84 
 
 
219 aa  65.9  0.0000000002  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_1072  two component LuxR family transcriptional regulator  54.84 
 
 
219 aa  65.9  0.0000000002  Mycobacterium sp. KMS  Bacteria  normal  0.562029  normal  0.0679961 
 
 
-
 
NC_009077  Mjls_1083  two component LuxR family transcriptional regulator  54.84 
 
 
219 aa  65.9  0.0000000002  Mycobacterium sp. JLS  Bacteria  normal  0.605869  normal 
 
 
-
 
NC_013131  Caci_7346  two component transcriptional regulator, LuxR family  52.17 
 
 
211 aa  65.9  0.0000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.0451998 
 
 
-
 
NC_013131  Caci_7415  two component transcriptional regulator, LuxR family  48.05 
 
 
228 aa  65.9  0.0000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.933403  normal 
 
 
-
 
NC_013739  Cwoe_0618  transcriptional regulator, LuxR family  39.29 
 
 
196 aa  65.9  0.0000000002  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_1030  two component transcriptional regulator, LuxR family  52.17 
 
 
212 aa  65.1  0.0000000003  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_014211  Ndas_4922  two component transcriptional regulator, LuxR family  48.1 
 
 
206 aa  65.1  0.0000000003  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0302523  normal 
 
 
-
 
NC_014151  Cfla_2683  two component transcriptional regulator, LuxR family  57.38 
 
 
209 aa  65.1  0.0000000003  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_0513  two component transcriptional regulator, LuxR family  55.74 
 
 
209 aa  65.1  0.0000000003  Actinosynnema mirum DSM 43827  Bacteria  normal  0.52986  n/a   
 
 
-
 
NC_013521  Sked_29940  two component transcriptional regulator, LuxR family  55.74 
 
 
234 aa  65.1  0.0000000004  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.683883 
 
 
-
 
NC_013947  Snas_2557  two component transcriptional regulator, LuxR family  46.67 
 
 
224 aa  64.7  0.0000000004  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.231398  normal  0.0978001 
 
 
-
 
NC_008148  Rxyl_0882  LuxR family transcriptional regulator  52.46 
 
 
253 aa  64.7  0.0000000004  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_0239  two component transcriptional regulator, LuxR family  53.23 
 
 
230 aa  64.7  0.0000000004  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_009455  DehaBAV1_1162  two component LuxR family transcriptional regulator  39.77 
 
 
225 aa  64.7  0.0000000004  Dehalococcoides sp. BAV1  Bacteria  normal  0.130665  n/a   
 
 
-
 
NC_009664  Krad_1198  two component transcriptional regulator, LuxR family  50 
 
 
225 aa  64.7  0.0000000004  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.109916  normal  0.0247339 
 
 
-
 
NC_013521  Sked_03540  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  43.75 
 
 
226 aa  64.3  0.0000000005  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_5428  two component transcriptional regulator, LuxR family  53.33 
 
 
201 aa  64.3  0.0000000006  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.358603 
 
 
-
 
NC_013131  Caci_5878  two component transcriptional regulator, LuxR family  52.46 
 
 
441 aa  63.9  0.0000000006  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.464013 
 
 
-
 
NC_008820  P9303_05591  DNA-binding response regulator  49.28 
 
 
241 aa  64.3  0.0000000006  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal  0.843109 
 
 
-
 
NC_013510  Tcur_2302  two component transcriptional regulator, LuxR family  43.01 
 
 
226 aa  64.3  0.0000000006  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0191252  n/a   
 
 
-
 
NC_009380  Strop_3279  response regulator receiver  50.82 
 
 
221 aa  63.9  0.0000000007  Salinispora tropica CNB-440  Bacteria  normal  0.97215  normal 
 
 
-
 
NC_013552  DhcVS_1132  DNA-binding response regulator, LuxR family  38.64 
 
 
225 aa  63.9  0.0000000007  Dehalococcoides sp. VS  Bacteria  normal  0.893152  n/a   
 
 
-
 
NC_013595  Sros_1746  response regulator receiver protein  45.33 
 
 
217 aa  63.9  0.0000000007  Streptosporangium roseum DSM 43021  Bacteria  normal  0.59096  normal  0.157721 
 
 
-
 
NC_011773  BCAH820_1531  DNA-binding response regulator  52.46 
 
 
210 aa  63.5  0.0000000008  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  8.64189e-24 
 
 
-
 
NC_003909  BCE_1563  DNA-binding response regulator  52.46 
 
 
210 aa  63.5  0.0000000008  Bacillus cereus ATCC 10987  Bacteria  hitchhiker  0.0000000942452  n/a   
 
 
-
 
NC_005945  BAS1348  DNA-binding response regulator  52.46 
 
 
210 aa  63.5  0.0000000008  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.0000440829  n/a   
 
 
-
 
NC_005957  BT9727_1322  response regulator  52.46 
 
 
210 aa  63.5  0.0000000008  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  decreased coverage  7.30192e-17  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1363  two component LuxR family transcriptional regulator  52.46 
 
 
210 aa  63.5  0.0000000008  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.0039551  n/a   
 
 
-
 
NC_007530  GBAA_1457  DNA-binding response regulator  52.46 
 
 
210 aa  63.5  0.0000000008  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.0000538049  n/a   
 
 
-
 
NC_011658  BCAH187_A1601  DNA-binding response regulator  52.46 
 
 
210 aa  63.5  0.0000000008  Bacillus cereus AH187  Bacteria  unclonable  0.00000000136266  n/a   
 
 
-
 
NC_008148  Rxyl_0160  two component LuxR family transcriptional regulator  49.28 
 
 
212 aa  63.9  0.0000000008  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_4871  two component transcriptional regulator, LuxR family  49.18 
 
 
222 aa  63.5  0.0000000008  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.134443  normal  0.31614 
 
 
-
 
NC_013739  Cwoe_1269  two component transcriptional regulator, LuxR family  45.95 
 
 
226 aa  63.9  0.0000000008  Conexibacter woesei DSM 14684  Bacteria  normal  hitchhiker  0.00432991 
 
 
-
 
NC_013521  Sked_08490  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  47.54 
 
 
236 aa  63.9  0.0000000008  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.199706  normal  0.526513 
 
 
-
 
NC_011772  BCG9842_B3849  DNA-binding response regulator  52.46 
 
 
210 aa  63.9  0.0000000008  Bacillus cereus G9842  Bacteria  decreased coverage  0.0000000308683  hitchhiker  0.000000000350245 
 
 
-
 
NC_013131  Caci_0956  two component transcriptional regulator, LuxR family  51.61 
 
 
221 aa  63.5  0.0000000008  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_3511  two component LuxR family transcriptional regulator  50.82 
 
 
221 aa  63.9  0.0000000008  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0444635 
 
 
-
 
NC_006274  BCZK1321  response regulator  52.46 
 
 
210 aa  63.5  0.0000000009  Bacillus cereus E33L  Bacteria  hitchhiker  0.00000332221  n/a   
 
 
-
 
NC_008148  Rxyl_2629  two component LuxR family transcriptional regulator  49.18 
 
 
232 aa  63.5  0.0000000009  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.312922  n/a   
 
 
-
 
NC_013947  Snas_2579  two component transcriptional regulator, LuxR family  48.31 
 
 
213 aa  63.5  0.0000000009  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.0500394 
 
 
-
 
NC_013595  Sros_3519  response regulator receiver protein  42.05 
 
 
220 aa  63.5  0.0000000009  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009565  TBFG_10861  nitrate/nitrite response transcriptional regulatory protein narL  57.89 
 
 
216 aa  63.5  0.0000000009  Mycobacterium tuberculosis F11  Bacteria  normal  hitchhiker  0.000061441 
 
 
-
 
NC_011886  Achl_2270  two component transcriptional regulator, LuxR family  49.25 
 
 
242 aa  63.2  0.000000001  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000000000113212 
 
 
-
 
NC_013235  Namu_1062  transcriptional regulator, LuxR family  50.82 
 
 
933 aa  63.2  0.000000001  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_7009  two component transcriptional regulator, LuxR family  48.48 
 
 
218 aa  63.2  0.000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0896567  n/a   
 
 
-
 
NC_009380  Strop_2235  regulatory protein, LuxR  43.24 
 
 
231 aa  63.2  0.000000001  Salinispora tropica CNB-440  Bacteria  normal  0.422182  normal 
 
 
-
 
NC_013131  Caci_0637  two component transcriptional regulator, LuxR family  54.24 
 
 
229 aa  63.2  0.000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.565019 
 
 
-
 
NC_009664  Krad_1998  two component transcriptional regulator, LuxR family  53.33 
 
 
225 aa  63.2  0.000000001  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.12496  normal 
 
 
-
 
NC_009664  Krad_4217  two component transcriptional regulator, LuxR family  53.23 
 
 
225 aa  62.8  0.000000001  Kineococcus radiotolerans SRS30216  Bacteria  decreased coverage  0.000816589  normal  0.757819 
 
 
-
 
NC_013159  Svir_26840  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  53.23 
 
 
239 aa  63.5  0.000000001  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.274056  normal  0.228776 
 
 
-
 
NC_013595  Sros_0827  response regulator receiver protein  49.28 
 
 
217 aa  63.2  0.000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_4479  two component transcriptional regulator, LuxR family  41.89 
 
 
224 aa  63.2  0.000000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.518456  normal  0.598935 
 
 
-
 
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