Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Snas_4871 |
Symbol | |
ID | 8886078 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Stackebrandtia nassauensis DSM 44728 |
Kingdom | Bacteria |
Replicon accession | NC_013947 |
Strand | + |
Start bp | 5172292 |
End bp | 5172960 |
Gene Length | 669 bp |
Protein Length | 222 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | |
Product | two component transcriptional regulator, LuxR family |
Protein accession | YP_003513605 |
Protein GI | 291302327 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.134443 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.31614 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATAGCC CCAATACCAA CGAAGACGTC ACGACCGTCC TGATCGTCGA CGACCACGAT TTGATCCGCA AAGGACTGCG CCACGCGTTC AGTCGGGATC CGCAGTTCGA GGTCGTCGCC GAGGCGGGAT CAGCGGGGGA CGGACTCCGC AAGGCGGCCG CGTTGCAGCC GAACGTCGTG ATCATGGATC TACGACTGCC GGACGGTTCG GGTCTGGAGG CGACCCGCAA ACTGCGCAAG GCCCACCCGA GCATGGGGAT CGTCGTGTTG ACCATGTACG CCGGGGATGA CCAGCTGTTC GGCGCCCTGG AAGCGGGGGC CAGCGCGTTC GTGCCCAAGA GCGCGCCGTC CGACGACGTG GTCTCGGCGG CCCGGCACGC GGCGACCACG CCCAACGCGT TCACCGCCGC CGACCTGGCC GAGGCGATGA AGCGCCGCCT GACGCCCAGC GGTCCACAGT TGTCACCGCG CGAGTCGCAG GTGCTGAAAC TGCTGGCGGA CGGCATGAGT GTCGCGGGCA TCGCCAAGCA GCTGTACGTA TCGGAATCCA CGGCCAAGAC GCACATCTCG AAGCTGTACG AGAAACTGGG GGCGGGCAAC CGGGCGCAGG CGCTGATGAC GGCGCTGAAG CTCGGGCTGC TGGAGGCACC GGACTCGCCG AAGTTCTAA
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Protein sequence | MNSPNTNEDV TTVLIVDDHD LIRKGLRHAF SRDPQFEVVA EAGSAGDGLR KAAALQPNVV IMDLRLPDGS GLEATRKLRK AHPSMGIVVL TMYAGDDQLF GALEAGASAF VPKSAPSDDV VSAARHAATT PNAFTAADLA EAMKRRLTPS GPQLSPRESQ VLKLLADGMS VAGIAKQLYV SESTAKTHIS KLYEKLGAGN RAQALMTALK LGLLEAPDSP KF
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