Gene Snas_4871 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSnas_4871 
Symbol 
ID8886078 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStackebrandtia nassauensis DSM 44728 
KingdomBacteria 
Replicon accessionNC_013947 
Strand
Start bp5172292 
End bp5172960 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content67% 
IMG OID 
Producttwo component transcriptional regulator, LuxR family 
Protein accessionYP_003513605 
Protein GI291302327 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.134443 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.31614 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATAGCC CCAATACCAA CGAAGACGTC ACGACCGTCC TGATCGTCGA CGACCACGAT 
TTGATCCGCA AAGGACTGCG CCACGCGTTC AGTCGGGATC CGCAGTTCGA GGTCGTCGCC
GAGGCGGGAT CAGCGGGGGA CGGACTCCGC AAGGCGGCCG CGTTGCAGCC GAACGTCGTG
ATCATGGATC TACGACTGCC GGACGGTTCG GGTCTGGAGG CGACCCGCAA ACTGCGCAAG
GCCCACCCGA GCATGGGGAT CGTCGTGTTG ACCATGTACG CCGGGGATGA CCAGCTGTTC
GGCGCCCTGG AAGCGGGGGC CAGCGCGTTC GTGCCCAAGA GCGCGCCGTC CGACGACGTG
GTCTCGGCGG CCCGGCACGC GGCGACCACG CCCAACGCGT TCACCGCCGC CGACCTGGCC
GAGGCGATGA AGCGCCGCCT GACGCCCAGC GGTCCACAGT TGTCACCGCG CGAGTCGCAG
GTGCTGAAAC TGCTGGCGGA CGGCATGAGT GTCGCGGGCA TCGCCAAGCA GCTGTACGTA
TCGGAATCCA CGGCCAAGAC GCACATCTCG AAGCTGTACG AGAAACTGGG GGCGGGCAAC
CGGGCGCAGG CGCTGATGAC GGCGCTGAAG CTCGGGCTGC TGGAGGCACC GGACTCGCCG
AAGTTCTAA
 
Protein sequence
MNSPNTNEDV TTVLIVDDHD LIRKGLRHAF SRDPQFEVVA EAGSAGDGLR KAAALQPNVV 
IMDLRLPDGS GLEATRKLRK AHPSMGIVVL TMYAGDDQLF GALEAGASAF VPKSAPSDDV
VSAARHAATT PNAFTAADLA EAMKRRLTPS GPQLSPRESQ VLKLLADGMS VAGIAKQLYV
SESTAKTHIS KLYEKLGAGN RAQALMTALK LGLLEAPDSP KF