More than 300 homologs were found in PanDaTox collection
for query gene Strop_3839 on replicon NC_009380
Organism: Salinispora tropica CNB-440



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009380  Strop_3839  regulatory protein, LuxR  100 
 
 
268 aa  508  1e-143  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_4229  two component LuxR family transcriptional regulator  92.59 
 
 
270 aa  469  1.0000000000000001e-131  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.104641 
 
 
-
 
NC_013947  Snas_1088  transcriptional regulator, LuxR family  45.56 
 
 
207 aa  188  5.999999999999999e-47  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_04700  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  68.67 
 
 
198 aa  112  9e-24  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.162406  normal 
 
 
-
 
NC_013093  Amir_6539  two component transcriptional regulator, LuxR family  67.47 
 
 
198 aa  110  2.0000000000000002e-23  Actinosynnema mirum DSM 43827  Bacteria  normal  0.370011  n/a   
 
 
-
 
NC_013235  Namu_1210  two component transcriptional regulator, LuxR family  82.26 
 
 
198 aa  107  3e-22  Nakamurella multipartita DSM 44233  Bacteria  normal  0.292938  normal 
 
 
-
 
NC_013947  Snas_0377  transcriptional regulator, LuxR family  77.78 
 
 
134 aa  106  4e-22  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_5412  transcriptional regulator, LuxR family  63.95 
 
 
155 aa  105  7e-22  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.207706  normal  0.221863 
 
 
-
 
NC_013757  Gobs_4449  two component transcriptional regulator, LuxR family  52.94 
 
 
253 aa  105  8e-22  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_2088  transcriptional regulator, LuxR family  77.42 
 
 
135 aa  105  8e-22  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_1011  two component transcriptional regulator, LuxR family  65.56 
 
 
203 aa  103  3e-21  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.109267 
 
 
-
 
NC_013235  Namu_4745  two component transcriptional regulator, LuxR family  56.25 
 
 
209 aa  102  6e-21  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_5235  transcriptional regulator, LuxR family  75.81 
 
 
134 aa  102  9e-21  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.183919  normal  0.452557 
 
 
-
 
NC_009664  Krad_0739  two component transcriptional regulator, LuxR family  81.97 
 
 
204 aa  102  9e-21  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.297506  normal  0.226729 
 
 
-
 
NC_014151  Cfla_2586  two component transcriptional regulator, LuxR family  39.58 
 
 
223 aa  100  4e-20  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.646343  normal 
 
 
-
 
NC_008578  Acel_0365  two component LuxR family transcriptional regulator  76.12 
 
 
199 aa  98.2  1e-19  Acidothermus cellulolyticus 11B  Bacteria  normal  0.210231  normal  0.243335 
 
 
-
 
NC_013947  Snas_0966  transcriptional regulator, LuxR family  74.19 
 
 
134 aa  97.8  2e-19  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.159258  normal 
 
 
-
 
NC_013947  Snas_4314  transcriptional regulator, LuxR family  70.49 
 
 
132 aa  90.9  2e-17  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_1473  transcriptional regulator, LuxR family  64.52 
 
 
203 aa  84  0.000000000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.569189  normal 
 
 
-
 
NC_008699  Noca_1020  response regulator receiver  54.17 
 
 
218 aa  77.8  0.0000000000002  Nocardioides sp. JS614  Bacteria  normal  0.648692  n/a   
 
 
-
 
NC_014151  Cfla_2391  two component transcriptional regulator, LuxR family  62.3 
 
 
239 aa  77.8  0.0000000000002  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0696687  hitchhiker  0.00128542 
 
 
-
 
NC_013441  Gbro_3238  regulatory protein LuxR  59.42 
 
 
228 aa  75.9  0.0000000000006  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_1873  two component transcriptional regulator, LuxR family  58.06 
 
 
233 aa  75.9  0.0000000000006  Jonesia denitrificans DSM 20603  Bacteria  normal  0.145213  normal  0.385799 
 
 
-
 
NC_013159  Svir_38740  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  30.22 
 
 
250 aa  75.5  0.0000000000009  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_3040  two component transcriptional regulator, LuxR family  54.17 
 
 
224 aa  75.5  0.000000000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0154763  normal 
 
 
-
 
NC_013411  GYMC61_1316  two component transcriptional regulator, LuxR family  28.21 
 
 
210 aa  75.1  0.000000000001  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_012669  Bcav_2822  two component transcriptional regulator, LuxR family  58.06 
 
 
231 aa  74.3  0.000000000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.311075  normal 
 
 
-
 
NC_013595  Sros_0199  response regulator receiver protein  59.02 
 
 
213 aa  73.9  0.000000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_2842  two component transcriptional regulator, LuxR family  36.04 
 
 
226 aa  73.6  0.000000000003  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.622781  decreased coverage  0.00305681 
 
 
-
 
NC_013757  Gobs_4001  two component transcriptional regulator, LuxR family  61.82 
 
 
236 aa  73.2  0.000000000004  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_20460  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  60.32 
 
 
229 aa  72.8  0.000000000006  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0212792  n/a   
 
 
-
 
NC_014165  Tbis_1846  LuxR family two component transcriptional regulator  55.56 
 
 
226 aa  72.4  0.000000000007  Thermobispora bispora DSM 43833  Bacteria  normal  0.699471  normal 
 
 
-
 
NC_013521  Sked_08490  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  54.84 
 
 
236 aa  72  0.000000000009  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.199706  normal  0.526513 
 
 
-
 
NC_013093  Amir_6235  two component transcriptional regulator, LuxR family  56.16 
 
 
215 aa  71.6  0.00000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  0.502704  n/a   
 
 
-
 
NC_009674  Bcer98_1160  two component LuxR family transcriptional regulator  52.46 
 
 
210 aa  71.2  0.00000000001  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_1134  two component LuxR family transcriptional regulator  55.74 
 
 
213 aa  72  0.00000000001  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_0956  two component transcriptional regulator, LuxR family  59.02 
 
 
221 aa  70.9  0.00000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_7009  two component transcriptional regulator, LuxR family  50.68 
 
 
218 aa  71.2  0.00000000002  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0896567  n/a   
 
 
-
 
NC_013441  Gbro_2342  response regulator receiver  55.74 
 
 
212 aa  70.9  0.00000000002  Gordonia bronchialis DSM 43247  Bacteria  normal  0.88989  n/a   
 
 
-
 
NC_013159  Svir_26840  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  50 
 
 
239 aa  70.9  0.00000000002  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.274056  normal  0.228776 
 
 
-
 
NC_014158  Tpau_2872  two component transcriptional regulator, LuxR family  50.62 
 
 
218 aa  70.9  0.00000000002  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_2278  LuxR response regulator receiver  63.64 
 
 
217 aa  70.5  0.00000000003  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A1495  DNA-binding response regulator  26.47 
 
 
210 aa  70.5  0.00000000003  Bacillus cereus B4264  Bacteria  unclonable  0.0000174821  n/a   
 
 
-
 
NC_013131  Caci_8412  two component transcriptional regulator, LuxR family  57.38 
 
 
239 aa  70.1  0.00000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_32990  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  52.46 
 
 
217 aa  70.5  0.00000000003  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.227707 
 
 
-
 
NC_013131  Caci_7843  two component transcriptional regulator, LuxR family  58.82 
 
 
231 aa  70.5  0.00000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.176081 
 
 
-
 
NC_008541  Arth_4134  two component LuxR family transcriptional regulator  55.74 
 
 
250 aa  69.7  0.00000000004  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_2469  two component transcriptional regulator, LuxR family  47.25 
 
 
214 aa  69.3  0.00000000005  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.126163  normal 
 
 
-
 
NC_013757  Gobs_1030  two component transcriptional regulator, LuxR family  58.33 
 
 
212 aa  69.7  0.00000000005  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_0480  two component transcriptional regulator, LuxR family  58.33 
 
 
214 aa  69.7  0.00000000005  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_6980  two component transcriptional regulator, LuxR family  52.17 
 
 
213 aa  69.7  0.00000000005  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.999676 
 
 
-
 
NC_013131  Caci_7415  two component transcriptional regulator, LuxR family  51.35 
 
 
228 aa  68.9  0.00000000007  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.933403  normal 
 
 
-
 
NC_009664  Krad_1198  two component transcriptional regulator, LuxR family  53.23 
 
 
225 aa  68.9  0.00000000007  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.109916  normal  0.0247339 
 
 
-
 
NC_013530  Xcel_2601  two component transcriptional regulator, LuxR family  46.99 
 
 
234 aa  69.3  0.00000000007  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.1212  n/a   
 
 
-
 
NC_013739  Cwoe_1616  two component transcriptional regulator, LuxR family  50 
 
 
229 aa  68.9  0.00000000008  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_4479  two component transcriptional regulator, LuxR family  55.74 
 
 
224 aa  68.9  0.00000000008  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.518456  normal  0.598935 
 
 
-
 
NC_011886  Achl_3912  two component transcriptional regulator, LuxR family  54.84 
 
 
230 aa  68.6  0.00000000009  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_011772  BCG9842_B3849  DNA-binding response regulator  27.75 
 
 
210 aa  68.6  0.00000000009  Bacillus cereus G9842  Bacteria  decreased coverage  0.0000000308683  hitchhiker  0.000000000350245 
 
 
-
 
NC_013131  Caci_0637  two component transcriptional regulator, LuxR family  51.43 
 
 
229 aa  68.6  0.0000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.565019 
 
 
-
 
NC_003909  BCE_1563  DNA-binding response regulator  27.75 
 
 
210 aa  68.6  0.0000000001  Bacillus cereus ATCC 10987  Bacteria  hitchhiker  0.0000000942452  n/a   
 
 
-
 
NC_005945  BAS1348  DNA-binding response regulator  27.75 
 
 
210 aa  68.6  0.0000000001  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.0000440829  n/a   
 
 
-
 
NC_005957  BT9727_1322  response regulator  27.75 
 
 
210 aa  68.6  0.0000000001  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  decreased coverage  7.30192e-17  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1363  two component LuxR family transcriptional regulator  27.75 
 
 
210 aa  68.6  0.0000000001  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.0039551  n/a   
 
 
-
 
NC_007530  GBAA_1457  DNA-binding response regulator  27.75 
 
 
210 aa  68.6  0.0000000001  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.0000538049  n/a   
 
 
-
 
NC_013235  Namu_0608  two component transcriptional regulator, LuxR family  52.05 
 
 
228 aa  68.2  0.0000000001  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_5905  response regulator receiver protein  53.52 
 
 
227 aa  68.2  0.0000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0252894  normal  0.145246 
 
 
-
 
NC_013235  Namu_0487  two component transcriptional regulator, LuxR family  54.1 
 
 
215 aa  68.6  0.0000000001  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_008697  Noca_4896  response regulator receiver  49.44 
 
 
215 aa  68.2  0.0000000001  Nocardioides sp. JS614  Bacteria  normal  0.446448  normal  0.220667 
 
 
-
 
NC_013739  Cwoe_3988  two component transcriptional regulator, LuxR family  56.45 
 
 
228 aa  68.6  0.0000000001  Conexibacter woesei DSM 14684  Bacteria  normal  0.0354189  normal  0.736565 
 
 
-
 
NC_009380  Strop_4132  response regulator receiver  55.38 
 
 
235 aa  68.6  0.0000000001  Salinispora tropica CNB-440  Bacteria  normal  0.232221  normal 
 
 
-
 
NC_009953  Sare_2352  two component LuxR family transcriptional regulator  40.46 
 
 
230 aa  68.6  0.0000000001  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.139824 
 
 
-
 
NC_011658  BCAH187_A1601  DNA-binding response regulator  27.75 
 
 
210 aa  68.6  0.0000000001  Bacillus cereus AH187  Bacteria  unclonable  0.00000000136266  n/a   
 
 
-
 
NC_011729  PCC7424_5070  two component transcriptional regulator, LuxR family  48.39 
 
 
210 aa  67.8  0.0000000002  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.744929 
 
 
-
 
NC_006274  BCZK1321  response regulator  53.33 
 
 
210 aa  68.2  0.0000000002  Bacillus cereus E33L  Bacteria  hitchhiker  0.00000332221  n/a   
 
 
-
 
NC_013131  Caci_5878  two component transcriptional regulator, LuxR family  55.74 
 
 
441 aa  67.4  0.0000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.464013 
 
 
-
 
NC_011726  PCC8801_2623  two component transcriptional regulator, LuxR family  45.83 
 
 
210 aa  68.2  0.0000000002  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_012669  Bcav_1820  two component transcriptional regulator, LuxR family  56.67 
 
 
216 aa  67.8  0.0000000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.677493  normal  0.0923177 
 
 
-
 
NC_008820  P9303_05591  DNA-binding response regulator  53.23 
 
 
241 aa  67.8  0.0000000002  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal  0.843109 
 
 
-
 
NC_013161  Cyan8802_3480  two component transcriptional regulator, LuxR family  45.83 
 
 
210 aa  68.2  0.0000000002  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.147525 
 
 
-
 
NC_013530  Xcel_0239  two component transcriptional regulator, LuxR family  50.7 
 
 
230 aa  67.8  0.0000000002  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_4217  two component transcriptional regulator, LuxR family  55.56 
 
 
225 aa  67.8  0.0000000002  Kineococcus radiotolerans SRS30216  Bacteria  decreased coverage  0.000816589  normal  0.757819 
 
 
-
 
NC_013947  Snas_1903  two component transcriptional regulator, LuxR family  49.33 
 
 
225 aa  67.8  0.0000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.202425  normal  0.182857 
 
 
-
 
NC_013131  Caci_5428  two component transcriptional regulator, LuxR family  60 
 
 
201 aa  68.2  0.0000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.358603 
 
 
-
 
NC_009921  Franean1_0533  two component LuxR family transcriptional regulator  52.46 
 
 
219 aa  67.4  0.0000000002  Frankia sp. EAN1pec  Bacteria  normal  0.405575  normal 
 
 
-
 
NC_012669  Bcav_1049  two component transcriptional regulator, LuxR family  51.25 
 
 
222 aa  67.4  0.0000000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.661499  normal  0.245945 
 
 
-
 
NC_013739  Cwoe_2472  two component transcriptional regulator, LuxR family  34.96 
 
 
221 aa  67.8  0.0000000002  Conexibacter woesei DSM 14684  Bacteria  normal  0.0113125  hitchhiker  0.00367669 
 
 
-
 
NC_011773  BCAH820_1531  DNA-binding response regulator  53.33 
 
 
210 aa  68.2  0.0000000002  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  8.64189e-24 
 
 
-
 
NC_013093  Amir_2737  two component transcriptional regulator, LuxR family  53.73 
 
 
227 aa  67.4  0.0000000002  Actinosynnema mirum DSM 43827  Bacteria  normal  0.418014  n/a   
 
 
-
 
NC_009953  Sare_4860  two component LuxR family transcriptional regulator  46.48 
 
 
219 aa  67.8  0.0000000002  Salinispora arenicola CNS-205  Bacteria  normal  0.452521  normal  0.0798716 
 
 
-
 
NC_011830  Dhaf_2789  two component transcriptional regulator, LuxR family  45.59 
 
 
212 aa  67  0.0000000003  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.246733  n/a   
 
 
-
 
NC_013131  Caci_7105  two component transcriptional regulator, LuxR family  53.97 
 
 
241 aa  67  0.0000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.106023  normal  0.469545 
 
 
-
 
NC_007951  Bxe_A1815  two component LuxR family transcriptional regulator  50.72 
 
 
213 aa  67.4  0.0000000003  Burkholderia xenovorans LB400  Bacteria  normal  0.922696  normal  0.34679 
 
 
-
 
NC_013525  Tter_0530  transcriptional regulator, LuxR family  42.67 
 
 
217 aa  67  0.0000000003  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008148  Rxyl_0882  LuxR family transcriptional regulator  46.91 
 
 
253 aa  67  0.0000000003  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_3244  response regulator receiver protein  52.46 
 
 
218 aa  67  0.0000000003  Streptosporangium roseum DSM 43021  Bacteria  hitchhiker  0.000568428  normal  0.332742 
 
 
-
 
NC_008578  Acel_1760  two component LuxR family transcriptional regulator  41.98 
 
 
303 aa  67.4  0.0000000003  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.887336 
 
 
-
 
NC_008699  Noca_1438  response regulator receiver  45.07 
 
 
213 aa  67  0.0000000003  Nocardioides sp. JS614  Bacteria  normal  0.494689  n/a   
 
 
-
 
NC_013889  TK90_1248  transcriptional regulator, LuxR family  45.61 
 
 
232 aa  67  0.0000000003  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_1998  two component transcriptional regulator, LuxR family  55.07 
 
 
225 aa  67  0.0000000003  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.12496  normal 
 
 
-
 
NC_009921  Franean1_5512  two component LuxR family transcriptional regulator  46.84 
 
 
250 aa  66.6  0.0000000003  Frankia sp. EAN1pec  Bacteria  normal  normal  0.631776 
 
 
-
 
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