More than 300 homologs were found in PanDaTox collection
for query gene Namu_4745 on replicon NC_013235
Organism: Nakamurella multipartita DSM 44233



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013235  Namu_4745  two component transcriptional regulator, LuxR family  100 
 
 
209 aa  416  9.999999999999999e-116  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_1210  two component transcriptional regulator, LuxR family  41.79 
 
 
198 aa  122  5e-27  Nakamurella multipartita DSM 44233  Bacteria  normal  0.292938  normal 
 
 
-
 
NC_013131  Caci_1011  two component transcriptional regulator, LuxR family  39.5 
 
 
203 aa  118  6e-26  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.109267 
 
 
-
 
NC_009664  Krad_0739  two component transcriptional regulator, LuxR family  37.69 
 
 
204 aa  105  5e-22  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.297506  normal  0.226729 
 
 
-
 
NC_009953  Sare_4229  two component LuxR family transcriptional regulator  53.04 
 
 
270 aa  103  2e-21  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.104641 
 
 
-
 
NC_008578  Acel_0365  two component LuxR family transcriptional regulator  41.36 
 
 
199 aa  102  4e-21  Acidothermus cellulolyticus 11B  Bacteria  normal  0.210231  normal  0.243335 
 
 
-
 
NC_009380  Strop_3839  regulatory protein, LuxR  56.25 
 
 
268 aa  102  4e-21  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_2586  two component transcriptional regulator, LuxR family  40.41 
 
 
223 aa  100  2e-20  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.646343  normal 
 
 
-
 
NC_013159  Svir_04700  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  40.33 
 
 
198 aa  94.7  9e-19  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.162406  normal 
 
 
-
 
NC_013093  Amir_6539  two component transcriptional regulator, LuxR family  40.33 
 
 
198 aa  94.4  1e-18  Actinosynnema mirum DSM 43827  Bacteria  normal  0.370011  n/a   
 
 
-
 
NC_013947  Snas_1088  transcriptional regulator, LuxR family  62.86 
 
 
207 aa  94  2e-18  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_5412  transcriptional regulator, LuxR family  63.08 
 
 
155 aa  89  5e-17  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.207706  normal  0.221863 
 
 
-
 
NC_009921  Franean1_5840  two component LuxR family transcriptional regulator  30.23 
 
 
237 aa  88.6  5e-17  Frankia sp. EAN1pec  Bacteria  normal  0.0206065  normal  0.380036 
 
 
-
 
NC_008578  Acel_1760  two component LuxR family transcriptional regulator  31.02 
 
 
303 aa  87.8  1e-16  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.887336 
 
 
-
 
NC_008699  Noca_1438  response regulator receiver  29.24 
 
 
213 aa  87.8  1e-16  Nocardioides sp. JS614  Bacteria  normal  0.494689  n/a   
 
 
-
 
NC_009719  Plav_1134  two component LuxR family transcriptional regulator  32.73 
 
 
213 aa  87  2e-16  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_0765  two component LuxR family transcriptional regulator  29.3 
 
 
237 aa  85.1  7e-16  Frankia sp. CcI3  Bacteria  normal  0.272345  normal 
 
 
-
 
NC_008009  Acid345_2443  two component LuxR family transcriptional regulator  31.41 
 
 
215 aa  84  0.000000000000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_4001  two component transcriptional regulator, LuxR family  36.94 
 
 
236 aa  83.6  0.000000000000002  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_5512  two component LuxR family transcriptional regulator  32.6 
 
 
250 aa  82.4  0.000000000000004  Frankia sp. EAN1pec  Bacteria  normal  normal  0.631776 
 
 
-
 
NC_013757  Gobs_1030  two component transcriptional regulator, LuxR family  35.12 
 
 
212 aa  82.4  0.000000000000005  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_4449  two component transcriptional regulator, LuxR family  44.04 
 
 
253 aa  82  0.000000000000006  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_1039  two component LuxR family transcriptional regulator  32.04 
 
 
238 aa  81.3  0.00000000000001  Frankia sp. CcI3  Bacteria  normal  normal  0.135118 
 
 
-
 
NC_013947  Snas_3745  two component transcriptional regulator, LuxR family  35.43 
 
 
235 aa  81.3  0.00000000000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.627677  normal  0.255424 
 
 
-
 
NC_008025  Dgeo_1626  two component LuxR family transcriptional regulator  37.65 
 
 
194 aa  80.1  0.00000000000002  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal  0.947018 
 
 
-
 
NC_013093  Amir_0513  two component transcriptional regulator, LuxR family  31.28 
 
 
209 aa  80.5  0.00000000000002  Actinosynnema mirum DSM 43827  Bacteria  normal  0.52986  n/a   
 
 
-
 
NC_008699  Noca_1020  response regulator receiver  33.33 
 
 
218 aa  79  0.00000000000004  Nocardioides sp. JS614  Bacteria  normal  0.648692  n/a   
 
 
-
 
NC_013595  Sros_4744  response regulator receiver protein  31.46 
 
 
209 aa  79.3  0.00000000000004  Streptosporangium roseum DSM 43021  Bacteria  normal  0.620464  normal  0.690137 
 
 
-
 
NC_009523  RoseRS_4275  two component LuxR family transcriptional regulator  29.86 
 
 
226 aa  79.3  0.00000000000004  Roseiflexus sp. RS-1  Bacteria  normal  0.798613  normal  0.287125 
 
 
-
 
NC_013385  Adeg_1034  two component transcriptional regulator, LuxR family  31.25 
 
 
213 aa  79  0.00000000000004  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_007412  Ava_C0116  two component LuxR family transcriptional regulator  26.73 
 
 
209 aa  79  0.00000000000005  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_2668  two component LuxR family transcriptional regulator  32.32 
 
 
213 aa  79  0.00000000000005  Pseudomonas mendocina ymp  Bacteria  normal  0.18046  normal 
 
 
-
 
NC_013947  Snas_0377  transcriptional regulator, LuxR family  56.45 
 
 
134 aa  78.6  0.00000000000006  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_1417  response regulator receiver protein  28.1 
 
 
234 aa  77.4  0.0000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0224272 
 
 
-
 
NC_009052  Sbal_1241  two component LuxR family transcriptional regulator  28.05 
 
 
216 aa  77.4  0.0000000000001  Shewanella baltica OS155  Bacteria  decreased coverage  0.0000399601  n/a   
 
 
-
 
NC_009338  Mflv_5014  two component LuxR family transcriptional regulator  31.18 
 
 
209 aa  77.8  0.0000000000001  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.103708  normal  0.29037 
 
 
-
 
NC_014165  Tbis_0775  LuxR family two component transcriptional regulator  28.7 
 
 
234 aa  77.4  0.0000000000001  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.336237 
 
 
-
 
NC_007333  Tfu_2278  LuxR response regulator receiver  32.32 
 
 
217 aa  77  0.0000000000002  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_007410  Ava_B0029  two component LuxR family transcriptional regulator  26.29 
 
 
220 aa  77  0.0000000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  0.268532  n/a   
 
 
-
 
NC_013947  Snas_2088  transcriptional regulator, LuxR family  61.4 
 
 
135 aa  77.4  0.0000000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_4064  two component transcriptional regulator, LuxR family  32.84 
 
 
217 aa  77  0.0000000000002  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_1902  two component LuxR family transcriptional regulator  30.06 
 
 
207 aa  77  0.0000000000002  Staphylococcus aureus subsp. aureus JH9  Bacteria  hitchhiker  0.00000041006  n/a   
 
 
-
 
NC_009632  SaurJH1_1936  response regulator receiver  30.06 
 
 
207 aa  77  0.0000000000002  Staphylococcus aureus subsp. aureus JH1  Bacteria  unclonable  0.000000150819  n/a   
 
 
-
 
NC_013947  Snas_0966  transcriptional regulator, LuxR family  61.4 
 
 
134 aa  77  0.0000000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.159258  normal 
 
 
-
 
NC_009997  Sbal195_1319  two component LuxR family transcriptional regulator  28.05 
 
 
216 aa  77  0.0000000000002  Shewanella baltica OS195  Bacteria  normal  0.0542522  decreased coverage  0.000972679 
 
 
-
 
NC_013131  Caci_5428  two component transcriptional regulator, LuxR family  33.97 
 
 
201 aa  76.3  0.0000000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.358603 
 
 
-
 
NC_007492  Pfl01_3957  two component LuxR family transcriptional regulator  27.83 
 
 
219 aa  76.3  0.0000000000003  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_3070  two component transcriptional regulator, LuxR family  27.6 
 
 
216 aa  76.6  0.0000000000003  Shewanella baltica OS223  Bacteria  decreased coverage  0.000689776  unclonable  0.00000000000283062 
 
 
-
 
NC_009664  Krad_1198  two component transcriptional regulator, LuxR family  29.82 
 
 
225 aa  76.3  0.0000000000003  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.109916  normal  0.0247339 
 
 
-
 
NC_013131  Caci_7589  two component transcriptional regulator, LuxR family  28 
 
 
225 aa  75.9  0.0000000000004  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.438424  normal  0.37363 
 
 
-
 
NC_008148  Rxyl_1550  two component LuxR family transcriptional regulator  31.98 
 
 
220 aa  75.9  0.0000000000004  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_3988  two component transcriptional regulator, LuxR family  34.22 
 
 
228 aa  75.1  0.0000000000006  Conexibacter woesei DSM 14684  Bacteria  normal  0.0354189  normal  0.736565 
 
 
-
 
NC_010320  Teth514_2042  two component LuxR family transcriptional regulator  25.48 
 
 
208 aa  75.5  0.0000000000006  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_1285  two component LuxR family transcriptional regulator  27.6 
 
 
216 aa  75.5  0.0000000000006  Shewanella baltica OS185  Bacteria  decreased coverage  0.000337392  n/a   
 
 
-
 
NC_013739  Cwoe_0356  two component transcriptional regulator, LuxR family  33.33 
 
 
220 aa  75.1  0.0000000000007  Conexibacter woesei DSM 14684  Bacteria  normal  0.165726  normal  0.0985551 
 
 
-
 
NC_013510  Tcur_4038  two component transcriptional regulator, LuxR family  27.1 
 
 
253 aa  75.1  0.0000000000007  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_5235  transcriptional regulator, LuxR family  53.62 
 
 
134 aa  74.3  0.000000000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.183919  normal  0.452557 
 
 
-
 
NC_013757  Gobs_3437  two component transcriptional regulator, LuxR family  30.77 
 
 
248 aa  74.3  0.000000000001  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.39912  n/a   
 
 
-
 
NC_013521  Sked_29940  two component transcriptional regulator, LuxR family  30.59 
 
 
234 aa  74.3  0.000000000001  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.683883 
 
 
-
 
NC_013521  Sked_03540  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  34.39 
 
 
226 aa  73.6  0.000000000002  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A1815  two component LuxR family transcriptional regulator  30.81 
 
 
213 aa  73.9  0.000000000002  Burkholderia xenovorans LB400  Bacteria  normal  0.922696  normal  0.34679 
 
 
-
 
NC_013947  Snas_4314  transcriptional regulator, LuxR family  55.74 
 
 
132 aa  73.9  0.000000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_21820  two component transcriptional regulator, LuxR family  28.12 
 
 
211 aa  73.9  0.000000000002  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_1998  two component transcriptional regulator, LuxR family  36.15 
 
 
225 aa  73.6  0.000000000002  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.12496  normal 
 
 
-
 
NC_002976  SERP1384  LuxR family DNA-binding response regulator  29.63 
 
 
207 aa  73.2  0.000000000003  Staphylococcus epidermidis RP62A  Bacteria  hitchhiker  0.000639089  n/a   
 
 
-
 
NC_010571  Oter_2496  two component LuxR family transcriptional regulator  33.73 
 
 
212 aa  72.8  0.000000000003  Opitutus terrae PB90-1  Bacteria  normal  normal  0.996792 
 
 
-
 
NC_010725  Mpop_3747  two component transcriptional regulator, LuxR family  31.07 
 
 
221 aa  72.8  0.000000000003  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_4132  response regulator receiver  30.73 
 
 
235 aa  72.8  0.000000000003  Salinispora tropica CNB-440  Bacteria  normal  0.232221  normal 
 
 
-
 
NC_010718  Nther_2325  two component transcriptional regulator, LuxR family  24.53 
 
 
228 aa  72.8  0.000000000003  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_010717  PXO_04459  two-component system regulatory protein  31.18 
 
 
213 aa  72.4  0.000000000004  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_0480  two component transcriptional regulator, LuxR family  33.74 
 
 
214 aa  72.8  0.000000000004  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_014211  Ndas_4922  two component transcriptional regulator, LuxR family  34.57 
 
 
206 aa  72.8  0.000000000004  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0302523  normal 
 
 
-
 
NC_013595  Sros_1684  response regulator receiver protein  29.94 
 
 
207 aa  72.8  0.000000000004  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.966789 
 
 
-
 
NC_013131  Caci_0175  two component transcriptional regulator, LuxR family  32.5 
 
 
222 aa  72.4  0.000000000004  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_4871  two component transcriptional regulator, LuxR family  30.86 
 
 
222 aa  72.4  0.000000000004  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.134443  normal  0.31614 
 
 
-
 
NC_013131  Caci_7812  two component transcriptional regulator, LuxR family  31.39 
 
 
227 aa  72.8  0.000000000004  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_010718  Nther_0648  two component transcriptional regulator, LuxR family  28.49 
 
 
215 aa  72.8  0.000000000004  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_2533  response regulator receiver protein  33.82 
 
 
220 aa  72.8  0.000000000004  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.495874 
 
 
-
 
NC_011884  Cyan7425_1929  two component transcriptional regulator, LuxR family  26 
 
 
209 aa  72.4  0.000000000004  Cyanothece sp. PCC 7425  Bacteria  normal  0.142226  normal 
 
 
-
 
NC_008532  STER_1387  DNA-binding response regulator  28.57 
 
 
214 aa  72.4  0.000000000005  Streptococcus thermophilus LMD-9  Bacteria  hitchhiker  0.00141106  n/a   
 
 
-
 
NC_013170  Ccur_10690  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  28.66 
 
 
215 aa  72.4  0.000000000005  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_2926  two component LuxR family transcriptional regulator  29.38 
 
 
223 aa  72.4  0.000000000005  Opitutus terrae PB90-1  Bacteria  normal  0.380263  normal 
 
 
-
 
NC_011884  Cyan7425_4561  two component transcriptional regulator, LuxR family  29.01 
 
 
217 aa  72.4  0.000000000005  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_7105  two component transcriptional regulator, LuxR family  29.26 
 
 
241 aa  72  0.000000000006  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.106023  normal  0.469545 
 
 
-
 
NC_008577  Shewana3_1152  two component LuxR family transcriptional regulator  27.73 
 
 
225 aa  72  0.000000000006  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_0615  two component transcriptional regulator, LuxR family  31.4 
 
 
216 aa  72  0.000000000006  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_014212  Mesil_2510  two component transcriptional regulator, LuxR family  26.99 
 
 
217 aa  72  0.000000000007  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_0717  two component transcriptional regulator, LuxR family  33.15 
 
 
209 aa  71.6  0.000000000008  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.854815  normal  0.189113 
 
 
-
 
NC_008025  Dgeo_1708  two component LuxR family transcriptional regulator  31.87 
 
 
221 aa  71.6  0.000000000008  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal  0.685529 
 
 
-
 
NC_008346  Swol_0186  response regulator receiver protein  30.67 
 
 
213 aa  71.6  0.000000000008  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  decreased coverage  0.00000327076  n/a   
 
 
-
 
NC_014151  Cfla_2842  two component transcriptional regulator, LuxR family  33.95 
 
 
226 aa  71.6  0.000000000008  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.622781  decreased coverage  0.00305681 
 
 
-
 
NC_007413  Ava_4518  two component LuxR family transcriptional regulator  29.38 
 
 
236 aa  71.2  0.000000000009  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_1099  two component transcriptional regulator, LuxR family  31.72 
 
 
213 aa  71.2  0.000000000009  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_0160  two component LuxR family transcriptional regulator  30.72 
 
 
212 aa  71.2  0.000000000009  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_0648  two component transcriptional regulator, LuxR family  33.7 
 
 
211 aa  71.2  0.000000000009  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0377209  hitchhiker  0.00104431 
 
 
-
 
NC_013093  Amir_2232  two component transcriptional regulator, LuxR family  32.67 
 
 
302 aa  71.2  0.00000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  0.501029  n/a   
 
 
-
 
NC_008321  Shewmr4_1151  two component LuxR family transcriptional regulator  27.56 
 
 
225 aa  70.9  0.00000000001  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008578  Acel_0973  two component LuxR family transcriptional regulator  33.13 
 
 
216 aa  70.9  0.00000000001  Acidothermus cellulolyticus 11B  Bacteria  normal  0.255067  normal  0.404517 
 
 
-
 
NC_013595  Sros_0277  response regulator receiver protein  32.34 
 
 
214 aa  70.9  0.00000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_2579  two component transcriptional regulator, LuxR family  34.84 
 
 
213 aa  70.9  0.00000000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.0500394 
 
 
-
 
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