| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_C0116 |
|---|
| Symbol | |
|---|
| ID | 3677824 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007412 |
|---|
| Strand | - |
|---|
| Start bp | 138276 |
|---|
| End bp | 138905 |
|---|
| Gene Length | 630 bp |
|---|
| Protein Length | 209 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637715199 |
|---|
| Product | two component LuxR family transcriptional regulator |
|---|
| Protein accession | YP_320393 |
|---|
| Protein GI | 75812776 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 45 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCAAG CTACGACCAT TCGGGTTCTA ATTGCGGACG ATCACGCCAT TTTTCGGCAA
GGATTAGCCA CGATTATTAA CCGTGACCCA GAGATGCAGG TGATTGCACA AGCCGAAAAT
GGGGAACAAG CGATCGCCGC CTTTCGAGAA CACCAACCAG ATGTAACGCT AATGGATCTG
CGAATGCCTG AAGTGGAAGG AGTTGCCGCC ATTGGTGCAA TTTGTGCTAC TGCTAAATCT
GCTCGGATTA TTGTACTGAC CACGTATGAT AGTGACGAAG ATATTTATCG GGGATTGCAG
GCAGGCGCAA AAGGATACCT GTTGAAAGAA ACTGAACCGG ACGAGCTTCT GAATGCGATT
CGTACCGTTC ATCGGGGCCA GAAGTATATT CCGCCCGATG TGGGAGCAAA GTTGGTACAG
CGCCTCAGCA ATCCAGAACT GAGTGAAAGA GAACTAGCAG TACTCCGCTC ACTGGCGCAG
GGAATGAGTA ATGCCGAGAT TGCGGCGGCT TTGAGTATCG GTGAAGGCAC TGTTAAATCC
CATGTCAATC GGATTTTGAA TAAGTTGGAT GTAAGCGATC GCACCCAAGC TGTGATTGTT
GCCGTTAAGC GCGGCATTGT AAGTTTGTAG
|
|---|
| Protein sequence | MSQATTIRVL IADDHAIFRQ GLATIINRDP EMQVIAQAEN GEQAIAAFRE HQPDVTLMDL
RMPEVEGVAA IGAICATAKS ARIIVLTTYD SDEDIYRGLQ AGAKGYLLKE TEPDELLNAI
RTVHRGQKYI PPDVGAKLVQ RLSNPELSER ELAVLRSLAQ GMSNAEIAAA LSIGEGTVKS
HVNRILNKLD VSDRTQAVIV AVKRGIVSL
|
|---|
| |