More than 300 homologs were found in PanDaTox collection
for query gene Snas_2088 on replicon NC_013947
Organism: Stackebrandtia nassauensis DSM 44728



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013947  Snas_2088  transcriptional regulator, LuxR family  100 
 
 
135 aa  266  8e-71  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_0377  transcriptional regulator, LuxR family  93.23 
 
 
134 aa  251  2.0000000000000002e-66  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_5235  transcriptional regulator, LuxR family  83.46 
 
 
134 aa  224  4e-58  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.183919  normal  0.452557 
 
 
-
 
NC_013947  Snas_0966  transcriptional regulator, LuxR family  78.2 
 
 
134 aa  210  4.9999999999999996e-54  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.159258  normal 
 
 
-
 
NC_009380  Strop_3839  regulatory protein, LuxR  77.42 
 
 
268 aa  105  2e-22  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_4229  two component LuxR family transcriptional regulator  77.42 
 
 
270 aa  105  3e-22  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.104641 
 
 
-
 
NC_013947  Snas_4314  transcriptional regulator, LuxR family  54.48 
 
 
132 aa  104  5e-22  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_1088  transcriptional regulator, LuxR family  74.19 
 
 
207 aa  102  1e-21  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_5412  transcriptional regulator, LuxR family  48.09 
 
 
155 aa  102  2e-21  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.207706  normal  0.221863 
 
 
-
 
NC_013757  Gobs_4449  two component transcriptional regulator, LuxR family  60.81 
 
 
253 aa  92.4  2e-18  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_1011  two component transcriptional regulator, LuxR family  67.74 
 
 
203 aa  91.7  3e-18  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.109267 
 
 
-
 
NC_013235  Namu_1210  two component transcriptional regulator, LuxR family  68.85 
 
 
198 aa  91.3  4e-18  Nakamurella multipartita DSM 44233  Bacteria  normal  0.292938  normal 
 
 
-
 
NC_013093  Amir_6539  two component transcriptional regulator, LuxR family  65.57 
 
 
198 aa  90.1  1e-17  Actinosynnema mirum DSM 43827  Bacteria  normal  0.370011  n/a   
 
 
-
 
NC_009664  Krad_0739  two component transcriptional regulator, LuxR family  67.74 
 
 
204 aa  89.7  1e-17  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.297506  normal  0.226729 
 
 
-
 
NC_013159  Svir_04700  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  65.57 
 
 
198 aa  90.1  1e-17  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.162406  normal 
 
 
-
 
NC_014151  Cfla_2586  two component transcriptional regulator, LuxR family  63.93 
 
 
223 aa  86.7  1e-16  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.646343  normal 
 
 
-
 
NC_008578  Acel_0365  two component LuxR family transcriptional regulator  57.33 
 
 
199 aa  85.9  2e-16  Acidothermus cellulolyticus 11B  Bacteria  normal  0.210231  normal  0.243335 
 
 
-
 
NC_013235  Namu_4745  two component transcriptional regulator, LuxR family  61.4 
 
 
209 aa  77.4  0.00000000000007  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_1473  transcriptional regulator, LuxR family  55.07 
 
 
203 aa  76.3  0.0000000000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.569189  normal 
 
 
-
 
NC_013159  Svir_38740  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  48.1 
 
 
250 aa  71.6  0.000000000003  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_1873  two component transcriptional regulator, LuxR family  52.94 
 
 
233 aa  71.2  0.000000000004  Jonesia denitrificans DSM 20603  Bacteria  normal  0.145213  normal  0.385799 
 
 
-
 
NC_013947  Snas_3040  two component transcriptional regulator, LuxR family  52.31 
 
 
224 aa  70.9  0.000000000005  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0154763  normal 
 
 
-
 
NC_013595  Sros_0199  response regulator receiver protein  48 
 
 
213 aa  71.2  0.000000000005  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_2391  two component transcriptional regulator, LuxR family  53.97 
 
 
239 aa  70.5  0.000000000007  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0696687  hitchhiker  0.00128542 
 
 
-
 
NC_008699  Noca_1020  response regulator receiver  55.74 
 
 
218 aa  70.5  0.000000000007  Nocardioides sp. JS614  Bacteria  normal  0.648692  n/a   
 
 
-
 
NC_013235  Namu_0487  two component transcriptional regulator, LuxR family  57.38 
 
 
215 aa  70.5  0.000000000007  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_2822  two component transcriptional regulator, LuxR family  46.67 
 
 
231 aa  70.5  0.000000000007  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.311075  normal 
 
 
-
 
NC_013235  Namu_0608  two component transcriptional regulator, LuxR family  49.33 
 
 
228 aa  69.7  0.00000000001  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_014158  Tpau_2872  two component transcriptional regulator, LuxR family  50.72 
 
 
218 aa  70.1  0.00000000001  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1820  two component transcriptional regulator, LuxR family  57.38 
 
 
216 aa  68.9  0.00000000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.677493  normal  0.0923177 
 
 
-
 
NC_013757  Gobs_4001  two component transcriptional regulator, LuxR family  60.38 
 
 
236 aa  68.9  0.00000000002  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_1998  two component transcriptional regulator, LuxR family  50.67 
 
 
225 aa  68.9  0.00000000002  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.12496  normal 
 
 
-
 
NC_013441  Gbro_2342  response regulator receiver  55.74 
 
 
212 aa  69.3  0.00000000002  Gordonia bronchialis DSM 43247  Bacteria  normal  0.88989  n/a   
 
 
-
 
NC_013131  Caci_8412  two component transcriptional regulator, LuxR family  53.97 
 
 
239 aa  68.6  0.00000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_0175  two component transcriptional regulator, LuxR family  50.72 
 
 
222 aa  68.6  0.00000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_20460  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  50 
 
 
229 aa  68.6  0.00000000003  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0212792  n/a   
 
 
-
 
NC_013739  Cwoe_0618  transcriptional regulator, LuxR family  44.86 
 
 
196 aa  68.2  0.00000000004  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_08490  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  48.53 
 
 
236 aa  67.8  0.00000000005  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.199706  normal  0.526513 
 
 
-
 
NC_008146  Mmcs_1056  two component LuxR family transcriptional regulator  53.85 
 
 
219 aa  67.8  0.00000000005  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_1072  two component LuxR family transcriptional regulator  53.85 
 
 
219 aa  67.8  0.00000000005  Mycobacterium sp. KMS  Bacteria  normal  0.562029  normal  0.0679961 
 
 
-
 
NC_009077  Mjls_1083  two component LuxR family transcriptional regulator  53.85 
 
 
219 aa  67.8  0.00000000005  Mycobacterium sp. JLS  Bacteria  normal  0.605869  normal 
 
 
-
 
NC_014151  Cfla_2842  two component transcriptional regulator, LuxR family  48.68 
 
 
226 aa  67.4  0.00000000006  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.622781  decreased coverage  0.00305681 
 
 
-
 
NC_013595  Sros_3244  response regulator receiver protein  51.61 
 
 
218 aa  67  0.00000000007  Streptosporangium roseum DSM 43021  Bacteria  hitchhiker  0.000568428  normal  0.332742 
 
 
-
 
NC_013441  Gbro_3238  regulatory protein LuxR  56.67 
 
 
228 aa  67.4  0.00000000007  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_7009  two component transcriptional regulator, LuxR family  51.47 
 
 
218 aa  67  0.00000000008  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0896567  n/a   
 
 
-
 
NC_013947  Snas_4479  two component transcriptional regulator, LuxR family  47.89 
 
 
224 aa  66.2  0.0000000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.518456  normal  0.598935 
 
 
-
 
NC_013131  Caci_7843  two component transcriptional regulator, LuxR family  53.12 
 
 
231 aa  66.2  0.0000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.176081 
 
 
-
 
NC_013739  Cwoe_4163  two component transcriptional regulator, LuxR family  45.35 
 
 
208 aa  66.6  0.0000000001  Conexibacter woesei DSM 14684  Bacteria  normal  0.296115  normal  0.698078 
 
 
-
 
NC_014151  Cfla_2683  two component transcriptional regulator, LuxR family  59.02 
 
 
209 aa  66.6  0.0000000001  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal 
 
 
-
 
NC_014211  Ndas_4922  two component transcriptional regulator, LuxR family  53.97 
 
 
206 aa  65.9  0.0000000002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0302523  normal 
 
 
-
 
NC_013947  Snas_2557  two component transcriptional regulator, LuxR family  48.68 
 
 
224 aa  65.9  0.0000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.231398  normal  0.0978001 
 
 
-
 
NC_008820  P9303_05591  DNA-binding response regulator  52.46 
 
 
241 aa  65.5  0.0000000002  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal  0.843109 
 
 
-
 
NC_009338  Mflv_5014  two component LuxR family transcriptional regulator  49.23 
 
 
209 aa  65.5  0.0000000002  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.103708  normal  0.29037 
 
 
-
 
NC_009719  Plav_1134  two component LuxR family transcriptional regulator  53.23 
 
 
213 aa  66.2  0.0000000002  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_5428  two component transcriptional regulator, LuxR family  52.86 
 
 
201 aa  65.9  0.0000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.358603 
 
 
-
 
NC_013530  Xcel_0606  two component transcriptional regulator, LuxR family  58.57 
 
 
212 aa  65.5  0.0000000002  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_1030  two component transcriptional regulator, LuxR family  56.67 
 
 
212 aa  65.1  0.0000000003  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_6235  two component transcriptional regulator, LuxR family  54.1 
 
 
215 aa  65.5  0.0000000003  Actinosynnema mirum DSM 43827  Bacteria  normal  0.502704  n/a   
 
 
-
 
NC_009380  Strop_2235  regulatory protein, LuxR  43.42 
 
 
231 aa  65.1  0.0000000003  Salinispora tropica CNB-440  Bacteria  normal  0.422182  normal 
 
 
-
 
NC_009664  Krad_1198  two component transcriptional regulator, LuxR family  49.32 
 
 
225 aa  65.5  0.0000000003  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.109916  normal  0.0247339 
 
 
-
 
NC_014165  Tbis_1846  LuxR family two component transcriptional regulator  52.94 
 
 
226 aa  64.7  0.0000000004  Thermobispora bispora DSM 43833  Bacteria  normal  0.699471  normal 
 
 
-
 
NC_008148  Rxyl_0882  LuxR family transcriptional regulator  47.14 
 
 
253 aa  64.7  0.0000000004  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_5878  two component transcriptional regulator, LuxR family  48.57 
 
 
441 aa  64.7  0.0000000004  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.464013 
 
 
-
 
NC_007333  Tfu_2278  LuxR response regulator receiver  57.41 
 
 
217 aa  64.7  0.0000000005  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_0480  two component transcriptional regulator, LuxR family  53.97 
 
 
214 aa  64.7  0.0000000005  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_03540  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  47.83 
 
 
226 aa  64.3  0.0000000005  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_7346  two component transcriptional regulator, LuxR family  55.74 
 
 
211 aa  63.9  0.0000000006  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.0451998 
 
 
-
 
NC_013595  Sros_1684  response regulator receiver protein  50.75 
 
 
207 aa  64.3  0.0000000006  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.966789 
 
 
-
 
NC_013595  Sros_5304  response regulator receiver protein  48.68 
 
 
220 aa  63.9  0.0000000007  Streptosporangium roseum DSM 43021  Bacteria  normal  0.128918  normal 
 
 
-
 
NC_008148  Rxyl_1550  two component LuxR family transcriptional regulator  41.67 
 
 
220 aa  63.9  0.0000000007  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_5905  response regulator receiver protein  52.94 
 
 
227 aa  63.9  0.0000000007  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0252894  normal  0.145246 
 
 
-
 
NC_011071  Smal_2340  two component transcriptional regulator, LuxR family  52.46 
 
 
217 aa  63.9  0.0000000007  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.273151  normal 
 
 
-
 
NC_013510  Tcur_2302  two component transcriptional regulator, LuxR family  53.23 
 
 
226 aa  63.9  0.0000000007  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0191252  n/a   
 
 
-
 
NC_009664  Krad_4217  two component transcriptional regulator, LuxR family  54.84 
 
 
225 aa  63.5  0.0000000008  Kineococcus radiotolerans SRS30216  Bacteria  decreased coverage  0.000816589  normal  0.757819 
 
 
-
 
NC_003909  BCE_1563  DNA-binding response regulator  52.46 
 
 
210 aa  63.5  0.0000000009  Bacillus cereus ATCC 10987  Bacteria  hitchhiker  0.0000000942452  n/a   
 
 
-
 
NC_005945  BAS1348  DNA-binding response regulator  52.46 
 
 
210 aa  63.5  0.0000000009  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.0000440829  n/a   
 
 
-
 
NC_005957  BT9727_1322  response regulator  52.46 
 
 
210 aa  63.5  0.0000000009  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  decreased coverage  7.30192e-17  n/a   
 
 
-
 
NC_011658  BCAH187_A1601  DNA-binding response regulator  52.46 
 
 
210 aa  63.5  0.0000000009  Bacillus cereus AH187  Bacteria  unclonable  0.00000000136266  n/a   
 
 
-
 
NC_007530  GBAA_1457  DNA-binding response regulator  52.46 
 
 
210 aa  63.5  0.0000000009  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.0000538049  n/a   
 
 
-
 
NC_011772  BCG9842_B3849  DNA-binding response regulator  52.46 
 
 
210 aa  63.5  0.0000000009  Bacillus cereus G9842  Bacteria  decreased coverage  0.0000000308683  hitchhiker  0.000000000350245 
 
 
-
 
NC_010184  BcerKBAB4_1363  two component LuxR family transcriptional regulator  52.46 
 
 
210 aa  63.5  0.0000000009  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.0039551  n/a   
 
 
-
 
NC_006274  BCZK1321  response regulator  52.46 
 
 
210 aa  63.5  0.000000001  Bacillus cereus E33L  Bacteria  hitchhiker  0.00000332221  n/a   
 
 
-
 
NC_011886  Achl_3912  two component transcriptional regulator, LuxR family  50.82 
 
 
230 aa  62.8  0.000000001  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013131  Caci_0956  two component transcriptional regulator, LuxR family  45.71 
 
 
221 aa  62.8  0.000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_0530  transcriptional regulator, LuxR family  45.16 
 
 
217 aa  63.2  0.000000001  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008699  Noca_3643  two component LuxR family transcriptional regulator  52.17 
 
 
215 aa  63.5  0.000000001  Nocardioides sp. JS614  Bacteria  normal  0.516516  n/a   
 
 
-
 
NC_013521  Sked_29940  two component transcriptional regulator, LuxR family  54.1 
 
 
234 aa  63.5  0.000000001  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.683883 
 
 
-
 
NC_013093  Amir_1549  two component transcriptional regulator, LuxR family  48.68 
 
 
238 aa  63.2  0.000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  0.196807  n/a   
 
 
-
 
NC_011773  BCAH820_1531  DNA-binding response regulator  52.46 
 
 
210 aa  63.5  0.000000001  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  8.64189e-24 
 
 
-
 
NC_013131  Caci_6980  two component transcriptional regulator, LuxR family  52.46 
 
 
213 aa  62.8  0.000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.999676 
 
 
-
 
NC_009674  Bcer98_1160  two component LuxR family transcriptional regulator  48.48 
 
 
210 aa  63.5  0.000000001  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_0827  response regulator receiver protein  54.1 
 
 
217 aa  63.2  0.000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_1253  two component transcriptional regulator, LuxR family  47.83 
 
 
203 aa  63.5  0.000000001  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_0513  two component transcriptional regulator, LuxR family  55.74 
 
 
209 aa  63.2  0.000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  0.52986  n/a   
 
 
-
 
NC_009380  Strop_3279  response regulator receiver  50.79 
 
 
221 aa  62.4  0.000000002  Salinispora tropica CNB-440  Bacteria  normal  0.97215  normal 
 
 
-
 
NC_013552  DhcVS_1132  DNA-binding response regulator, LuxR family  46.77 
 
 
225 aa  62.8  0.000000002  Dehalococcoides sp. VS  Bacteria  normal  0.893152  n/a   
 
 
-
 
NC_009455  DehaBAV1_1162  two component LuxR family transcriptional regulator  46.77 
 
 
225 aa  62.8  0.000000002  Dehalococcoides sp. BAV1  Bacteria  normal  0.130665  n/a   
 
 
-
 
NC_013131  Caci_1951  two component transcriptional regulator, LuxR family  45.45 
 
 
226 aa  62.4  0.000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.0924411 
 
 
-
 
NC_009953  Sare_3511  two component LuxR family transcriptional regulator  50.79 
 
 
221 aa  62.4  0.000000002  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0444635 
 
 
-
 
NC_013411  GYMC61_1316  two component transcriptional regulator, LuxR family  48.39 
 
 
210 aa  62  0.000000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
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