Gene Caci_6980 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_6980 
Symbol 
ID8338346 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp8077289 
End bp8077930 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content71% 
IMG OID644960060 
Producttwo component transcriptional regulator, LuxR family 
Protein accessionYP_003117651 
Protein GI256396087 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.999676 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCCACG ACACGATCCG CGTCGTCCTG GCCGACGACC ACACGGTGAT GCGCGCCGGC 
GTCGTCGCCC TGCTGGCCTC CGAGCCCACC ATCACCATCG TCGGCGAGGC CGGCGACGGC
CGGGAGGCGG TCGAGCTCGT CGAGCGCCTC GGCGCCGACG TGGCGCTGCT CGATCTGCGG
ATGCCCGTCC TGGACGGCGT CGCGGCCACC ACCGAGATCG TCGCCGGCAA AACCGGAACC
AGGGTCCTGA TCCTCACCAC TTATGACACC GACGCCGAGA TCGAGCGCGC GGTCGAGGCC
GGCGCGATCG GCTATCTGCT CAAGGACACC ACCCGCGAGC AGCTCGTGGA GGCCATCCGC
GGCGCGGCCC GCGGCGAGAC CGTCCTGGCG CCCCGGATCG CGGCCAAGCT TGTGGCGCGC
ATGCGGCAAC CCGCCCCTGT CGTGCTGACC ACGCGGGAGG TCGACGTGCT CAACGGCGTC
GCCGACGGCC TGTCCAACGC CGACATCGGC AAACGGCTGG TCATCGCCGA GGCGACGGTG
AAGACCCACC TGCTCCGCGT CTTCGCCAAG CTCGACGTCA GCGACCGCAC GCACGCCGTC
GTCACCGCCC TCGAACGAGG CCTGTTGCCC CGCTCCGAGT GA
 
Protein sequence
MTHDTIRVVL ADDHTVMRAG VVALLASEPT ITIVGEAGDG REAVELVERL GADVALLDLR 
MPVLDGVAAT TEIVAGKTGT RVLILTTYDT DAEIERAVEA GAIGYLLKDT TREQLVEAIR
GAARGETVLA PRIAAKLVAR MRQPAPVVLT TREVDVLNGV ADGLSNADIG KRLVIAEATV
KTHLLRVFAK LDVSDRTHAV VTALERGLLP RSE