| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal_1241 |
|---|
| Symbol | |
|---|
| ID | 4841688 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS155 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009052 |
|---|
| Strand | - |
|---|
| Start bp | 1427082 |
|---|
| End bp | 1427732 |
|---|
| Gene Length | 651 bp |
|---|
| Protein Length | 216 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640118460 |
|---|
| Product | two component LuxR family transcriptional regulator |
|---|
| Protein accession | YP_001049628 |
|---|
| Protein GI | 126173479 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0000399601 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATACGC AAAACAACAT CATCAGTGTC GGCTTAGTAG AAGATCAACA ATTGGTTCGC
CAAGGTATCG CTAGCCTGCT CGCCATTTCC GACAACATTC GCGTGGTGTG GCAGGCCGAA
GACGGCCAAG ATGCACTCAG CCAACTCGCT AATAATCCTG TCGATGTGCT GCTCAGTGAT
ATTCGCATGC CAAATCTTGA TGGCATCGCC ATGCTCAAAC AGATACGTCA GAATGCCAAT
AGCTTACCTG TCATCATGTT AACCACCTTC GATGACAGTG AGTTATTCCT CAATAGTTTA
CAGGCGGGCG CCAACGGCTT TTTGCTCAAG GACGTGTCAC TCGATAAGTT ACTGCACGCC
ATCGAAACCG TCGCTAAAGG CGGCTACTTG ATTGAGCCTT CGGTACTCAA ACAGATGAGT
GAGCCTAAAC CTGCACCTAG CGTTGGGGTA ACTAGAAATG AATTATTGTC GGAACGGGAG
CGGGAAATCC TCAGTTTTAT GGCGGGCGGA TTCTCCAACA AGGAAATCGC CAACGCGGTA
TTTTTAGCCG AGGGCACAGT GAAGAATCAT GTCTCTAACA TACTCACTAA ACTCGATTGC
CGAGACCGCA CTCAAGCTGT ACTCAAGGGC TTACAACTGG CATTGATCTA A
|
|---|
| Protein sequence | MDTQNNIISV GLVEDQQLVR QGIASLLAIS DNIRVVWQAE DGQDALSQLA NNPVDVLLSD
IRMPNLDGIA MLKQIRQNAN SLPVIMLTTF DDSELFLNSL QAGANGFLLK DVSLDKLLHA
IETVAKGGYL IEPSVLKQMS EPKPAPSVGV TRNELLSERE REILSFMAGG FSNKEIANAV
FLAEGTVKNH VSNILTKLDC RDRTQAVLKG LQLALI
|
|---|
| |