More than 300 homologs were found in PanDaTox collection
for query gene Pfl01_3957 on replicon NC_007492
Organism: Pseudomonas fluorescens Pf0-1



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007492  Pfl01_3957  two component LuxR family transcriptional regulator  100 
 
 		 219 aa  437  9.999999999999999e-123  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010322  PputGB1_1667  two component LuxR family transcriptional regulator  80.37 
 
 		 219 aa  345  2e-94  Pseudomonas putida GB-1  Bacteria  normal  1  normal  0.869411 
 
 
-
 
NC_002947  PP_2126  LuxR family DNA-binding response regulator  78.54 
 
 		 219 aa  340  9e-93  Pseudomonas putida KT2440  Bacteria  normal  0.118459  normal  0.107719 
 
 
-
 
NC_009512  Pput_3615  two component LuxR family transcriptional regulator  78.08 
 
 		 219 aa  337  8e-92  Pseudomonas putida F1  Bacteria  normal  0.378192  normal  0.274637 
 
 
-
 
NC_010501  PputW619_1643  two component LuxR family transcriptional regulator  78.54 
 
 		 219 aa  333  1e-90  Pseudomonas putida W619  Bacteria  normal  0.118638  normal  1 
 
 
-
 
NC_004578  PSPTO_3526  DNA-binding response regulator, LuxR family  74.09 
 
 		 220 aa  322  2e-87  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0134281  n/a   
 
 
-
 
NC_007005  Psyr_3299  LuxR response regulator receiver  70.45 
 
 		 220 aa  311  5.999999999999999e-84  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0158345  normal  1 
 
 
-
 
NC_009439  Pmen_1563  two component LuxR family transcriptional regulator  62.56 
 
 		 214 aa  264  7e-70  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  0.241819 
 
 
-
 
NC_010571  Oter_0829  two component LuxR family transcriptional regulator  46.98 
 
 		 219 aa  198  6e-50  Opitutus terrae PB90-1  Bacteria  normal  1  normal  0.0121621 
 
 
-
 
NC_008255  CHU_1317  response regulator  40.37 
 
 		 220 aa  183  2.0000000000000003e-45  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.500574  normal  0.0503905 
 
 
-
 
NC_011662  Tmz1t_1311  two component transcriptional regulator, LuxR family  47.91 
 
 		 226 aa  179  2e-44  Thauera sp. MZ1T  Bacteria  normal  0.165019  n/a   
 
 
-
 
NC_007298  Daro_2343  two component LuxR family transcriptional regulator  42.45 
 
 		 211 aa  174  9.999999999999999e-43  Dechloromonas aromatica RCB  Bacteria  normal  0.999882  normal  0.0841394 
 
 
-
 
NC_008700  Sama_1873  response regulator receiver protein  44.81 
 
 		 215 aa  172  3.9999999999999995e-42  Shewanella amazonensis SB2B  Bacteria  normal  0.56104  normal  1 
 
 
-
 
NC_002939  GSU1293  LuxR family DNA-binding response regulator  41.74 
 
 		 216 aa  169  2e-41  Geobacter sulfurreducens PCA  Bacteria  normal  1  n/a   
 
 
-
 
NC_007908  Rfer_0894  two component LuxR family transcriptional regulator  46.7 
 
 		 217 aa  168  7e-41  Rhodoferax ferrireducens T118  Bacteria  normal  1  n/a   
 
 
-
 
NC_009901  Spea_2299  two component LuxR family transcriptional regulator  41.67 
 
 		 221 aa  167  1e-40  Shewanella pealeana ATCC 700345  Bacteria  normal  1  n/a   
 
 
-
 
NC_012918  GM21_1103  two component transcriptional regulator, LuxR family  40.09 
 
 		 216 aa  162  3e-39  Geobacter sp. M21  Bacteria  n/a    normal  1 
 
 
-
 
NC_008255  CHU_0105  two component LuxR family transcriptional regulator  36.15 
 
 		 215 aa  160  1e-38  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0303042  normal  0.309888 
 
 
-
 
NC_009943  Dole_0029  two component LuxR family transcriptional regulator  41.71 
 
 		 214 aa  160  2e-38  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.317943  n/a   
 
 
-
 
NC_008009  Acid345_4290  two component LuxR family transcriptional regulator  39.73 
 
 		 218 aa  157  1e-37  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  1  normal  1 
 
 
-
 
NC_002939  GSU0682  LuxR family DNA-binding response regulator  40.65 
 
 		 215 aa  156  2e-37  Geobacter sulfurreducens PCA  Bacteria  normal  0.874366  n/a   
 
 
-
 
NC_011830  Dhaf_1230  two component transcriptional regulator, LuxR family  38.68 
 
 		 215 aa  155  5.0000000000000005e-37  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_011145  AnaeK_1881  two component transcriptional regulator, LuxR family  37.67 
 
 		 218 aa  154  7e-37  Anaeromyxobacter sp. K  Bacteria  normal  0.0160211  n/a   
 
 
-
 
NC_011891  A2cp1_1966  two component transcriptional regulator, LuxR family  37.67 
 
 		 218 aa  154  7e-37  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007760  Adeh_1997  two component LuxR family transcriptional regulator  37.79 
 
 		 218 aa  154  1e-36  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  1  n/a   
 
 
-
 
NC_012918  GM21_0467  two component transcriptional regulator, LuxR family  37.16 
 
 		 216 aa  154  1e-36  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000507383 
 
 
-
 
NC_002939  GSU3229  LuxR family DNA-binding response regulator  35.65 
 
 		 229 aa  152  2.9999999999999998e-36  Geobacter sulfurreducens PCA  Bacteria  normal  1  n/a   
 
 
-
 
NC_003910  CPS_1406  DNA-binding response regulator  36.84 
 
 		 215 aa  152  2.9999999999999998e-36  Colwellia psychrerythraea 34H  Bacteria  normal  0.253896  n/a   
 
 
-
 
NC_013730  Slin_0700  two component transcriptional regulator, LuxR family  35.87 
 
 		 218 aa  152  4e-36  Spirosoma linguale DSM 74  Bacteria  hitchhiker  0.00980919  normal  0.316207 
 
 
-
 
NC_009972  Haur_0983  two component LuxR family transcriptional regulator  38.21 
 
 		 213 aa  152  4e-36  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  1  n/a   
 
 
-
 
NC_009675  Anae109_1385  two component LuxR family transcriptional regulator  38.1 
 
 		 212 aa  152  4e-36  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011146  Gbem_0451  two component transcriptional regulator, LuxR family  36.87 
 
 		 216 aa  152  5e-36  Geobacter bemidjiensis Bem  Bacteria  normal  1  n/a   
 
 
-
 
NC_011831  Cagg_3668  two component transcriptional regulator, LuxR family  39.9 
 
 		 213 aa  150  2e-35  Chloroflexus aggregans DSM 9485  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008554  Sfum_1664  two component LuxR family transcriptional regulator  35.85 
 
 		 218 aa  150  2e-35  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.49018  normal  1 
 
 
-
 
NC_009483  Gura_2780  two component LuxR family transcriptional regulator  37.1 
 
 		 226 aa  149  3e-35  Geobacter uraniireducens Rf4  Bacteria  normal  1  n/a   
 
 
-
 
NC_009675  Anae109_1810  two component LuxR family transcriptional regulator  36.28 
 
 		 218 aa  148  7e-35  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010338  Caul_2685  two component LuxR family transcriptional regulator  35.21 
 
 		 222 aa  147  1.0000000000000001e-34  Caulobacter sp. K31  Bacteria  normal  0.120511  normal  1 
 
 
-
 
NC_013510  Tcur_4038  two component transcriptional regulator, LuxR family  34.88 
 
 		 253 aa  146  3e-34  Thermomonospora curvata DSM 43183  Bacteria  normal  1  n/a   
 
 
-
 
NC_008009  Acid345_1691  two component LuxR family transcriptional regulator  36.74 
 
 		 208 aa  145  5e-34  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  1  normal  0.0637899 
 
 
-
 
NC_007644  Moth_0023  two component LuxR family transcriptional regulator  38.81 
 
 		 221 aa  144  1e-33  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.273145  hitchhiker  0.00000136124 
 
 
-
 
NC_007333  Tfu_2491  LuxR response regulator receiver  33.48 
 
 		 242 aa  143  2e-33  Thermobifida fusca YX  Bacteria  normal  0.470277  n/a   
 
 
-
 
NC_007974  Rmet_4516  two component LuxR family transcriptional regulator  35.65 
 
 		 214 aa  142  4e-33  Cupriavidus metallidurans CH34  Bacteria  normal  0.0463384  normal  0.0270495 
 
 
-
 
NC_011071  Smal_1888  two component transcriptional regulator, LuxR family  38.97 
 
 		 212 aa  142  4e-33  Stenotrophomonas maltophilia R551-3  Bacteria  normal  1  normal  0.265772 
 
 
-
 
NC_013552  DhcVS_601  DNA-binding response regulator, LuxR family  34.72 
 
 		 224 aa  142  5e-33  Dehalococcoides sp. VS  Bacteria  normal  1  n/a   
 
 
-
 
NC_011831  Cagg_0340  two component transcriptional regulator, LuxR family  34.56 
 
 		 217 aa  142  5e-33  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00614189  hitchhiker  0.00317709 
 
 
-
 
NC_010524  Lcho_1782  two component LuxR family transcriptional regulator  40.78 
 
 		 214 aa  142  6e-33  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000000360675 
 
 
-
 
NC_014165  Tbis_0775  LuxR family two component transcriptional regulator  34.42 
 
 		 234 aa  142  6e-33  Thermobispora bispora DSM 43833  Bacteria  normal  1  normal  0.336237 
 
 
-
 
NC_009654  Mmwyl1_0679  two component LuxR family transcriptional regulator  37.26 
 
 		 213 aa  140  9.999999999999999e-33  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_002936  DET0663  LuxR family DNA-binding response regulator  34.1 
 
 		 224 aa  140  1.9999999999999998e-32  Dehalococcoides ethenogenes 195  Bacteria  normal  1  n/a   
 
 
-
 
NC_002936  DET0697  LuxR family DNA-binding response regulator  34.1 
 
 		 224 aa  140  1.9999999999999998e-32  Dehalococcoides ethenogenes 195  Bacteria  normal  1  n/a   
 
 
-
 
NC_010717  PXO_06170  response regulator  41.55 
 
 		 210 aa  140  1.9999999999999998e-32  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.624626  n/a   
 
 
-
 
NC_010717  PXO_00996  response regulator  41.55 
 
 		 210 aa  140  1.9999999999999998e-32  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.0885199  n/a   
 
 
-
 
NC_009455  DehaBAV1_0632  two component LuxR family transcriptional regulator  33.64 
 
 		 224 aa  140  1.9999999999999998e-32  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.00385785  n/a   
 
 
-
 
NC_012791  Vapar_3992  two component transcriptional regulator, LuxR family  39.52 
 
 		 214 aa  139  1.9999999999999998e-32  Variovorax paradoxus S110  Bacteria  normal  0.82671  n/a   
 
 
-
 
NC_009078  BURPS1106A_A3133  LuxR family DNA-binding response regulator  38.76 
 
 		 215 aa  139  3e-32  Burkholderia pseudomallei 1106a  Bacteria  normal  1  n/a   
 
 
-
 
NC_009674  Bcer98_1160  two component LuxR family transcriptional regulator  36.62 
 
 		 210 aa  139  3e-32  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  1  n/a   
 
 
-
 
NC_007519  Dde_0977  two component LuxR family transcriptional regulator  34.91 
 
 		 223 aa  139  3e-32  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  decreased coverage  0.00800748  n/a   
 
 
-
 
NC_008752  Aave_4229  two component LuxR family transcriptional regulator  41.75 
 
 		 219 aa  139  3e-32  Acidovorax citrulli AAC00-1  Bacteria  normal  0.720334  normal  0.28913 
 
 
-
 
NC_010625  Bphy_7047  two component LuxR family transcriptional regulator  34.26 
 
 		 215 aa  139  3e-32  Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.976007 
 
 
-
 
NC_013411  GYMC61_3240  two component transcriptional regulator, LuxR family  34.82 
 
 		 224 aa  139  3.9999999999999997e-32  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013385  Adeg_1034  two component transcriptional regulator, LuxR family  38.21 
 
 		 213 aa  139  3.9999999999999997e-32  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
-
 
NC_010184  BcerKBAB4_5205  two component LuxR family transcriptional regulator  34.88 
 
 		 215 aa  139  3.9999999999999997e-32  Bacillus weihenstephanensis KBAB4  Bacteria  normal  1  n/a   
 
 
-
 
NC_014210  Ndas_4080  two component transcriptional regulator, LuxR family  33.33 
 
 		 241 aa  139  3.9999999999999997e-32  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  1  normal  0.858367 
 
 
-
 
NC_012856  Rpic12D_3406  two component transcriptional regulator, LuxR family  38.57 
 
 		 214 aa  139  3.9999999999999997e-32  Ralstonia pickettii 12D  Bacteria  normal  0.588591  normal  1 
 
 
-
 
NC_010506  Swoo_3747  two component LuxR family transcriptional regulator  36.89 
 
 		 206 aa  138  7e-32  Shewanella woodyi ATCC 51908  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009077  Mjls_0581  two component LuxR family transcriptional regulator  37.21 
 
 		 215 aa  138  7.999999999999999e-32  Mycobacterium sp. JLS  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008146  Mmcs_0590  two component LuxR family transcriptional regulator  37.21 
 
 		 215 aa  138  7.999999999999999e-32  Mycobacterium sp. MCS  Bacteria  normal  1  n/a   
 
 
-
 
NC_008705  Mkms_0603  two component LuxR family transcriptional regulator  37.21 
 
 		 215 aa  138  7.999999999999999e-32  Mycobacterium sp. KMS  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012918  GM21_3105  two component transcriptional regulator, LuxR family  33.49 
 
 		 223 aa  137  8.999999999999999e-32  Geobacter sp. M21  Bacteria  n/a    normal  1 
 
 
-
 
NC_012918  GM21_1971  two component transcriptional regulator, LuxR family  37.04 
 
 		 216 aa  137  1e-31  Geobacter sp. M21  Bacteria  n/a    normal  1 
 
 
-
 
NC_006349  BMAA2071  LuxR family DNA-binding response regulator  38.28 
 
 		 215 aa  137  1e-31  Burkholderia mallei ATCC 23344  Bacteria  normal  1  n/a   
 
 
-
 
NC_008784  BMASAVP1_1100  LuxR family DNA-binding response regulator  38.28 
 
 		 215 aa  137  1e-31  Burkholderia mallei SAVP1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009075  BURPS668_A3248  LuxR family DNA-binding response regulator  38.28 
 
 		 215 aa  137  1e-31  Burkholderia pseudomallei 668  Bacteria  normal  0.780539  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1463  LuxR family DNA-binding response regulator  38.28 
 
 		 215 aa  137  1e-31  Burkholderia pseudomallei 1710b  Bacteria  normal  1  n/a   
 
 
-
 
NC_011830  Dhaf_1194  two component transcriptional regulator, LuxR family  34.12 
 
 		 217 aa  137  1e-31  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.272513  n/a   
 
 
-
 
NC_010682  Rpic_3729  two component transcriptional regulator, LuxR family  38.46 
 
 		 214 aa  137  1e-31  Ralstonia pickettii 12J  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008228  Patl_2290  two component LuxR family transcriptional regulator  35.92 
 
 		 215 aa  137  1e-31  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_008228  Patl_2450  two component LuxR family transcriptional regulator  34.43 
 
 		 214 aa  137  1e-31  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.00539256  n/a   
 
 
-
 
NC_009079  BMA10247_A2364  LuxR family DNA-binding response regulator  38.28 
 
 		 215 aa  137  1e-31  Burkholderia mallei NCTC 10247  Bacteria  normal  1  n/a   
 
 
-
 
NC_008835  BMA10229_1379  LuxR family DNA-binding response regulator  38.28 
 
 		 215 aa  137  1e-31  Burkholderia mallei NCTC 10229  Bacteria  normal  1  n/a   
 
 
-
 
NC_013037  Dfer_2055  two component transcriptional regulator, LuxR family  33.03 
 
 		 220 aa  137  1e-31  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013411  GYMC61_1316  two component transcriptional regulator, LuxR family  34.58 
 
 		 210 aa  137  1e-31  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007519  Dde_2674  two component LuxR family transcriptional regulator  35.18 
 
 		 215 aa  137  2e-31  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.721789  n/a   
 
 
-
 
NC_008699  Noca_1020  response regulator receiver  36.53 
 
 		 218 aa  137  2e-31  Nocardioides sp. JS614  Bacteria  normal  0.648692  n/a   
 
 
-
 
NC_011725  BCB4264_A1495  DNA-binding response regulator  36.32 
 
 		 210 aa  136  3.0000000000000003e-31  Bacillus cereus B4264  Bacteria  unclonable  0.0000174821  n/a   
 
 
-
 
NC_010627  Bphy_7761  two component LuxR family transcriptional regulator  35.41 
 
 		 213 aa  136  3.0000000000000003e-31  Burkholderia phymatum STM815  Bacteria  normal  1  normal  1 
 
 
-
 
NC_002939  GSU0254  LuxR family DNA-binding response regulator  35.81 
 
 		 215 aa  135  4e-31  Geobacter sulfurreducens PCA  Bacteria  normal  1  n/a   
 
 
-
 
NC_008726  Mvan_1646  two component LuxR family transcriptional regulator  37.09 
 
 		 219 aa  135  4e-31  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  1  normal  0.92254 
 
 
-
 
NC_013595  Sros_3331  response regulator receiver protein  40.61 
 
 		 227 aa  135  4e-31  Streptosporangium roseum DSM 43021  Bacteria  normal  0.832029  normal  0.250763 
 
 
-
 
NC_007511  Bcep18194_B2520  two component LuxR family transcriptional regulator  34.12 
 
 		 214 aa  135  6.0000000000000005e-31  Burkholderia sp. 383  Bacteria  normal  0.943169  normal  0.310419 
 
 
-
 
NC_009483  Gura_2782  two component LuxR family transcriptional regulator  36.24 
 
 		 214 aa  135  6.0000000000000005e-31  Geobacter uraniireducens Rf4  Bacteria  normal  0.834695  n/a   
 
 
-
 
NC_007777  Francci3_0765  two component LuxR family transcriptional regulator  32.56 
 
 		 237 aa  135  6.0000000000000005e-31  Frankia sp. CcI3  Bacteria  normal  0.272345  normal  1 
 
 
-
 
NC_007951  Bxe_A4347  two component LuxR family transcriptional regulator  34.4 
 
 		 218 aa  135  6.0000000000000005e-31  Burkholderia xenovorans LB400  Bacteria  normal  1  normal  0.705126 
 
 
-
 
NC_011772  BCG9842_B3849  DNA-binding response regulator  36.79 
 
 		 210 aa  135  6.0000000000000005e-31  Bacillus cereus G9842  Bacteria  decreased coverage  0.0000000308683  hitchhiker  0.000000000350245 
 
 
-
 
NC_009901  Spea_1953  response regulator  34.43 
 
 		 214 aa  135  6.0000000000000005e-31  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.00404481  n/a   
 
 
-
 
NC_008699  Noca_1438  response regulator receiver  35.02 
 
 		 213 aa  135  6.0000000000000005e-31  Nocardioides sp. JS614  Bacteria  normal  0.494689  n/a   
 
 
-
 
NC_011772  BCG9842_B5417  DNA-binding response regulator  34.88 
 
 		 215 aa  135  7.000000000000001e-31  Bacillus cereus G9842  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014212  Mesil_2510  two component transcriptional regulator, LuxR family  37.62 
 
 		 217 aa  134  7.000000000000001e-31  Meiothermus silvanus DSM 9946  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010001  Cphy_3936  two component LuxR family transcriptional regulator  33.64 
 
 		 213 aa  135  7.000000000000001e-31  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00507176  n/a   
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  35.81 
 
 		 224 aa  135  7.000000000000001e-31  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
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