| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2450 |
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| Symbol | |
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| ID | 4174202 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2979604 |
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| End bp | 2980248 |
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| Gene Length | 645 bp |
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| Protein Length | 214 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638055464 |
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| Product | two component LuxR family transcriptional regulator |
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| Protein accession | YP_662020 |
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| Protein GI | 109898765 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00539256 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | TTGATAAAAA TATTGTTGGT TGATGACCAT GAGTTGGTCA GAACCGGTAT AAGACGTATT
TTGGAAGATG TACAAGGTTT TGTCGTAGTT GGAGAAGCTA CAACGGGTGA AGAGGCAGTC
AAATTCTGCC GTAAAAATGC ACCCGATTTG GTATTAATGG ATATGAGTAT GCCTGGCATT
GGTGGATTGG AAGCGACCAA GCAAATCTTG CGTTTTAGTG AAAATACACG TGTTATCGTG
TTATCGGTTC ACAAAGAAAA CCCCATTCCT GCGAAAGTGA TGCGTATGGG AGCATTTGGT
TATTTAACGA AAGACTCAGA TCCTAAAGAG ATGGAGTTGG CTATTCGTAA AGTAGCCGCT
GGGCAAAAGT ACGTTTCCCC TGATATCGCC CAGCAAATTG CAATAGGTGC GCTAGATTTC
AGTGACGGCA ACCCGTTTGA GTCTCTGTCA GAGCGCGAAT TAGAGATCAC GCTTATGCTG
ACCAAGGGTT CAAAAGTCCC AGACATTGCC AAGTTTTTAA ATATCAGTGC GAAAACAGTG
AACACCCATC GTTATCGTAT GTTTGAAAAG CTCAATGTCA GTACGGATGT TGAGCTGACT
CATTTGGCAC TGCGCCATAA GTTGATTAAT TCAGAAAATT TGTAA
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| Protein sequence | MIKILLVDDH ELVRTGIRRI LEDVQGFVVV GEATTGEEAV KFCRKNAPDL VLMDMSMPGI
GGLEATKQIL RFSENTRVIV LSVHKENPIP AKVMRMGAFG YLTKDSDPKE MELAIRKVAA
GQKYVSPDIA QQIAIGALDF SDGNPFESLS ERELEITLML TKGSKVPDIA KFLNISAKTV
NTHRYRMFEK LNVSTDVELT HLALRHKLIN SENL
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