| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3992 |
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| Symbol | |
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| ID | 7974557 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4234620 |
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| End bp | 4235264 |
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| Gene Length | 645 bp |
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| Protein Length | 214 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644794578 |
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| Product | two component transcriptional regulator, LuxR family |
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| Protein accession | YP_002945872 |
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| Protein GI | 239816962 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.82671 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGAACG ACGCCGCCCC CGTCCGCCTC TTCCTGGTCG ACGACCATCC GCTGGTGCGC
GATGGCCTGC GCGCGCGGCT CGGCGCCCTG CCGGGGCTGG AGATCGTCGG CGAGGCCGGC
AGCGCGGCCG AGGCGCTGGC GCTCATCGAA ACGCTCCAGC CCGACCTGCT GCTGATGGAT
GTCGGCATGA AGGACATGAA CGGCATCGAC CTGGCTGCGC TGGTGCTGCA GCGCCATCAG
CCCGCGCCGC ACGTGGTGAT GCTCAGCATG TACGACAACC CCGAGTACGT GCAGAAGGCC
CTGCAGGTGG GCGCGCGCGG CTATGTGCTG AAAGATGCGC CCGCGGCCGA GATCGTCGCG
GCCATCGAGG CGGTGTCGGC CGGCGGCACC TTCCTGAGCC CGGCCGTGTC GAAGAAGCTG
TTCCGCAACC AGGCGCCCCG GCCGCTGCTC ACGCCGCGCG AGAGCGAGAT CCTCAGCGCG
CTGGGCCGCG GCGAATCGAG CAAGCAGATC GCGCGCGACC TGGGCCTGAG CGTGCGCACC
GTGGAGGCGC ACCGGCAGAG CATCAAGCGG CGGCTCGGCA TCGAGGGGCA GGCGGAACTC
ATCAAGTATG CGGTGGAGCA TGCGCGGGAG TTCGGGCAGG GCTGA
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| Protein sequence | MKNDAAPVRL FLVDDHPLVR DGLRARLGAL PGLEIVGEAG SAAEALALIE TLQPDLLLMD
VGMKDMNGID LAALVLQRHQ PAPHVVMLSM YDNPEYVQKA LQVGARGYVL KDAPAAEIVA
AIEAVSAGGT FLSPAVSKKL FRNQAPRPLL TPRESEILSA LGRGESSKQI ARDLGLSVRT
VEAHRQSIKR RLGIEGQAEL IKYAVEHARE FGQG
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