| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1782 |
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| Symbol | |
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| ID | 6162820 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1925964 |
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| End bp | 1926608 |
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| Gene Length | 645 bp |
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| Protein Length | 214 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641664544 |
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| Product | two component LuxR family transcriptional regulator |
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| Protein accession | YP_001790814 |
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| Protein GI | 171058465 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.000000360675 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCGCATCG TGCTGGTGGA TGACCATGCG CTGGTGCGCG AGGGCGTGCG CGCCCTGCTC
GCCAGCCAGC CCGCCCTCGA GGTGGTCGGC GAAGCCGCCC AGGCCGACGA AGCCCTGCTG
CGGGTGGCCG AGCTGCAACC CGACCTGGTG CTGATGGACA TCGGCATGAA GCACACCAAC
GGCATCCACC TCACCGCCGA GCTGCAGCGC CTGCACCCGG GGCTGGCGGT GCTGATGCTC
AGCATGTACG ACAACCCCGA ATACGTGCAC CAGGCGCTGC AGGCGGGCGC GCGTGGCTAC
GTGCTCAAGG ACGGCCCGTC GAGCGAGATC TTCGCGGCCA TCGAGGCCAT CGGCGCGGGT
GGCAACTACC TCAGCACCCA GCTCACCCGC GCAGCGGGGG CCCGCACCGA CGATCCGCGC
CCGCTGCTGT CCGAGCGCGA GAGCGAGATC CTCAACGGCC TGGCACGCGG GCTGTCGAGC
AAGCAGATCG CGGCGCAGTT CGACCTCAGC GTGCGCACCG TCGAGACCCA CCGCCAGAAC
ATCCGCCGCA AGCTCAAGAT CGCCGGCCAG GCCGAGCTGA TCCGCTACGC GGTGGAGCGC
TGCCGCACCC ACGGCGACGC GCCGGGCGGC GATCCGCCGC GCTGA
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| Protein sequence | MRIVLVDDHA LVREGVRALL ASQPALEVVG EAAQADEALL RVAELQPDLV LMDIGMKHTN
GIHLTAELQR LHPGLAVLML SMYDNPEYVH QALQAGARGY VLKDGPSSEI FAAIEAIGAG
GNYLSTQLTR AAGARTDDPR PLLSERESEI LNGLARGLSS KQIAAQFDLS VRTVETHRQN
IRRKLKIAGQ AELIRYAVER CRTHGDAPGG DPPR
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