Gene Spea_1953 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_1953 
Symbol 
ID5664745 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand+ 
Start bp2376525 
End bp2377169 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content42% 
IMG OID641236547 
Productresponse regulator 
Protein accessionYP_001501810 
Protein GI157961776 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.00404481 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGATCTCAG TATATTTAGT TGATGACCAT GAGTTAGTAA GAACCGGTAT TAGACGGATC 
CTCGAAGATG AGAGGGGTAT TAAAGTCATC GGTGAGGCTG GCGATGGCGA AACTGCTGTG 
CAGTGGTGCC GCAAAAATGA AGCTGACGTG ATTTTGATGG ATATGAATAT GCCGGGTATT 
GGCGGTTTAG AGGCGACACG TAAGATCTTA CGTTTTCAAG CCCATGCCAA GATTATTGTG 
CTAACCATTC ATACTGAAGA TCCTTTTCCG ACCAAAGTTA TGCAAGCAGG GGCTTCAGGT 
TATCTAACTA AAGGGGCGAC TTCTCCAGAA GTACTGCAGG CAATTAGACA AGTGGCTCAT 
GGACAAAGAT ATTTGTCACC TGAGATTGCT CAACAGATGG CTCTGAGTCA GTTCAATCAA 
TCTGAAGATA ATCCATTTAA GACGTTATCG GAGAGAGAGC TGCAGATCAT GCTGATGATC 
ACCAATGGTG AAAAAGTGAG TGAGATCTCT GAGCAGTTAA ATTTAAGTCC TAAAACAGTC 
AATAGTTATC GTTATCGTCT GTTTGCTAAG TTAGGCATTG GTGGAGATGT AGAGCTGACT 
CGTTTAGCTA TTCGATATAA AATGTTGGAT ACTGGACAAT TCTAA
 
Protein sequence
MISVYLVDDH ELVRTGIRRI LEDERGIKVI GEAGDGETAV QWCRKNEADV ILMDMNMPGI 
GGLEATRKIL RFQAHAKIIV LTIHTEDPFP TKVMQAGASG YLTKGATSPE VLQAIRQVAH 
GQRYLSPEIA QQMALSQFNQ SEDNPFKTLS ERELQIMLMI TNGEKVSEIS EQLNLSPKTV 
NSYRYRLFAK LGIGGDVELT RLAIRYKMLD TGQF