Gene PSPTO_3526 details

Gene Information

• Locus tag: PSPTO_3526
• ID: 1185191
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 3979129
• End bp: 3979791
• Gene Length: 663 bp
• Protein Length: 220 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 637394879
• Product: DNA-binding response regulator, LuxR family
• Protein accession: NP_793306
• Protein GI: 28870687
• COG category: [K] Transcription; [T] Signal transduction mechanisms
• COG ID: [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.0134281
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCTGCA ATTTGTTACT GGTCGACGAC CACTCCCTGA TCAGAGCCGG TGTGCGAGCA 
CTGGTCGCTG ACATACCGGG TTACGCCATC GTCGGCGAAG CGGCTGACGG CGCGCAGCTA 
TCAGGCCTGG CACAGCGCCT GGAGCCCGAT ATCATCCTGC TCGATATCTG GATGAAAAGC 
ATCGACGGCT TCGACGCGTT GAAGCAACTG TTCAAGGTGC AGCCGCACTG CAAGGTGCTC 
ATCCTGTCGA TGCATACCGA CCCGGACATG ATCATCCGCG CGCTCGACGC AGGCGCTCGT 
GGCTACCTGC TCAAGGACAC CACCGCCACT GAACTGGAGC AGGCACTGGA AGCGCTGCGT 
AACGATCAGC GTTACCTGAG CCCGGCCATC GCCCATACTG TCCTTGAGCG TGCAGTGCAC 
GGTACGCGGG CCGAACGGGC CAGGGCTGCG AGAGAACGTT ACAACCTCAC CGCCCGCCAA 
TTGGAAATCC TGCGCCTGAT CGTGCGTGGC AAGTCCACAC GAGAAATCGC CAGCGGCCTG 
GGCCTGAGCA TCAAGACGGT CGAGACTCAC CGCTCGCAGA TCATGAAACG GCTGCAGATT 
TTCGACGTCG CAGGATTGGT ACTGTTTTGC GTGCGCGAAC GGATTATCAG TCTGGACGAT 
TGA 

 

Protein sequence

MTCNLLLVDD HSLIRAGVRA LVADIPGYAI VGEAADGAQL SGLAQRLEPD IILLDIWMKS 
IDGFDALKQL FKVQPHCKVL ILSMHTDPDM IIRALDAGAR GYLLKDTTAT ELEQALEALR 
NDQRYLSPAI AHTVLERAVH GTRAERARAA RERYNLTARQ LEILRLIVRG KSTREIASGL 
GLSIKTVETH RSQIMKRLQI FDVAGLVLFC VRERIISLDD