Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | DET1350 |
Symbol | |
ID | 3229372 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dehalococcoides ethenogenes 195 |
Kingdom | Bacteria |
Replicon accession | NC_002936 |
Strand | + |
Start bp | 1219838 |
End bp | 1220515 |
Gene Length | 678 bp |
Protein Length | 225 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637120912 |
Product | LuxR family DNA-binding response regulator |
Protein accession | YP_182061 |
Protein GI | 57233907 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00111586 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAAGACA ACAGTAAGAT CAGGGTAATG GTCATAGATG AGCAACCTTT TTTCAGGGCG GGTGTTGCCC AGGCCTTATC CGACAACAAC TTTGAGATAC TCCCAACCGA TACCCACAGA GACCCAATGG AACAGATTGA GAGCAGCCTG CCGGATGTGG TACTTTTGGG TTCAGACCTG GTGGCGTACA GCGGGCTAGA TTTGGGCAGG CGGATTGTAC GCACCTTCCC CAATACCAAG GTTATTATCC TTTCCCCAAA CCCGAATGAT ACCGAGCTGT TTGAATGCAT CAGGACAGCG GCTGTGGCCT GTTTGAAAAA AAGCAGCACG GCTGATGAGC TTATTGAGAC TATCCGCCGG GCTAACCGGG GAGAATACCC TATAAATGAA AGCCTGATGA CCAGCCCCAA CCTGGCCAAA CAGGTGCTGG CCCAGTTTCA AGACGTATCC CTGCTGGGCA AAGATGCTTC CAATTTCGTT ACCCCTTTAA CCAACCGCAA AAAACAGATA CTGACCCTTA TTGCCAATGG CAATACCAAC AAACAGATTG CCAACAATCT GGAAATAAGT GAACAGACCA TAAAGAACCA CGTCAGCGCC ATTTTACGCA AATTGAACGC TAATGACCGG GCACACGCTG TTGTAGTGGC CATCCGCTGC GGCTTGATAA ATATATAA
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Protein sequence | MEDNSKIRVM VIDEQPFFRA GVAQALSDNN FEILPTDTHR DPMEQIESSL PDVVLLGSDL VAYSGLDLGR RIVRTFPNTK VIILSPNPND TELFECIRTA AVACLKKSST ADELIETIRR ANRGEYPINE SLMTSPNLAK QVLAQFQDVS LLGKDASNFV TPLTNRKKQI LTLIANGNTN KQIANNLEIS EQTIKNHVSA ILRKLNANDR AHAVVVAIRC GLINI
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