Gene DET1350 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDET1350 
Symbol 
ID3229372 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDehalococcoides ethenogenes 195 
KingdomBacteria 
Replicon accessionNC_002936 
Strand
Start bp1219838 
End bp1220515 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content49% 
IMG OID637120912 
ProductLuxR family DNA-binding response regulator 
Protein accessionYP_182061 
Protein GI57233907 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00111586 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAGACA ACAGTAAGAT CAGGGTAATG GTCATAGATG AGCAACCTTT TTTCAGGGCG 
GGTGTTGCCC AGGCCTTATC CGACAACAAC TTTGAGATAC TCCCAACCGA TACCCACAGA
GACCCAATGG AACAGATTGA GAGCAGCCTG CCGGATGTGG TACTTTTGGG TTCAGACCTG
GTGGCGTACA GCGGGCTAGA TTTGGGCAGG CGGATTGTAC GCACCTTCCC CAATACCAAG
GTTATTATCC TTTCCCCAAA CCCGAATGAT ACCGAGCTGT TTGAATGCAT CAGGACAGCG
GCTGTGGCCT GTTTGAAAAA AAGCAGCACG GCTGATGAGC TTATTGAGAC TATCCGCCGG
GCTAACCGGG GAGAATACCC TATAAATGAA AGCCTGATGA CCAGCCCCAA CCTGGCCAAA
CAGGTGCTGG CCCAGTTTCA AGACGTATCC CTGCTGGGCA AAGATGCTTC CAATTTCGTT
ACCCCTTTAA CCAACCGCAA AAAACAGATA CTGACCCTTA TTGCCAATGG CAATACCAAC
AAACAGATTG CCAACAATCT GGAAATAAGT GAACAGACCA TAAAGAACCA CGTCAGCGCC
ATTTTACGCA AATTGAACGC TAATGACCGG GCACACGCTG TTGTAGTGGC CATCCGCTGC
GGCTTGATAA ATATATAA
 
Protein sequence
MEDNSKIRVM VIDEQPFFRA GVAQALSDNN FEILPTDTHR DPMEQIESSL PDVVLLGSDL 
VAYSGLDLGR RIVRTFPNTK VIILSPNPND TELFECIRTA AVACLKKSST ADELIETIRR
ANRGEYPINE SLMTSPNLAK QVLAQFQDVS LLGKDASNFV TPLTNRKKQI LTLIANGNTN
KQIANNLEIS EQTIKNHVSA ILRKLNANDR AHAVVVAIRC GLINI