More than 300 homologs were found in PanDaTox collection
for query gene Namu_3769 on replicon NC_013235
Organism: Nakamurella multipartita DSM 44233



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013235  Namu_3769  transcriptional regulator, LuxR family  100 
 
 
205 aa  394  1e-109  Nakamurella multipartita DSM 44233  Bacteria  normal  0.0158689  normal  0.601222 
 
 
-
 
NC_013235  Namu_3546  two component transcriptional regulator, LuxR family  48.6 
 
 
229 aa  150  1e-35  Nakamurella multipartita DSM 44233  Bacteria  decreased coverage  0.00000843196  hitchhiker  0.00749158 
 
 
-
 
NC_008578  Acel_1390  two component LuxR family transcriptional regulator  38.94 
 
 
225 aa  111  6e-24  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_1549  two component transcriptional regulator, LuxR family  39.9 
 
 
238 aa  105  3e-22  Actinosynnema mirum DSM 43827  Bacteria  normal  0.196807  n/a   
 
 
-
 
NC_009664  Krad_1583  two component transcriptional regulator, LuxR family  37.31 
 
 
200 aa  85.1  6e-16  Kineococcus radiotolerans SRS30216  Bacteria  decreased coverage  0.00238178  normal  0.469918 
 
 
-
 
NC_014151  Cfla_1727  transcriptional regulator, LuxR family  72.13 
 
 
137 aa  84.3  0.000000000000001  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal  0.0510322 
 
 
-
 
NC_013131  Caci_6781  two component transcriptional regulator, LuxR family  68.85 
 
 
232 aa  84  0.000000000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.516576 
 
 
-
 
NC_008009  Acid345_2443  two component LuxR family transcriptional regulator  54.84 
 
 
215 aa  72.4  0.000000000005  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_0020  two component transcriptional regulator, LuxR family  50 
 
 
229 aa  70.5  0.00000000002  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_0983  two component LuxR family transcriptional regulator  38.36 
 
 
213 aa  68.9  0.00000000005  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_7117  two component LuxR family transcriptional regulator  49.33 
 
 
214 aa  68.6  0.00000000007  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_1417  response regulator receiver protein  34.93 
 
 
234 aa  68.2  0.00000000008  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0224272 
 
 
-
 
NC_008148  Rxyl_0160  two component LuxR family transcriptional regulator  36.69 
 
 
212 aa  68.2  0.00000000009  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_009455  DehaBAV1_1162  two component LuxR family transcriptional regulator  45.71 
 
 
225 aa  68.2  0.00000000009  Dehalococcoides sp. BAV1  Bacteria  normal  0.130665  n/a   
 
 
-
 
NC_013552  DhcVS_1132  DNA-binding response regulator, LuxR family  45.71 
 
 
225 aa  67.4  0.0000000001  Dehalococcoides sp. VS  Bacteria  normal  0.893152  n/a   
 
 
-
 
NC_013235  Namu_0480  two component transcriptional regulator, LuxR family  53.85 
 
 
214 aa  67.4  0.0000000001  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_1134  two component LuxR family transcriptional regulator  44.44 
 
 
213 aa  67  0.0000000002  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_002936  DET1350  LuxR family DNA-binding response regulator  44.29 
 
 
225 aa  66.2  0.0000000003  Dehalococcoides ethenogenes 195  Bacteria  decreased coverage  0.00111586  n/a   
 
 
-
 
NC_010571  Oter_3372  two component LuxR family transcriptional regulator  35.77 
 
 
212 aa  66.2  0.0000000003  Opitutus terrae PB90-1  Bacteria  normal  normal  0.383896 
 
 
-
 
NC_013235  Namu_3387  two component transcriptional regulator, LuxR family  34.52 
 
 
223 aa  66.2  0.0000000003  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.0000386408  hitchhiker  0.000570848 
 
 
-
 
NC_011071  Smal_2061  two component transcriptional regulator, LuxR family  29.25 
 
 
224 aa  65.9  0.0000000004  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.737796  normal 
 
 
-
 
NC_009425  Ent638_4204  two component LuxR family transcriptional regulator  25.98 
 
 
202 aa  65.9  0.0000000004  Enterobacter sp. 638  Bacteria  hitchhiker  0.00789571  normal 
 
 
-
 
NC_013411  GYMC61_1316  two component transcriptional regulator, LuxR family  30.66 
 
 
210 aa  65.9  0.0000000004  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009767  Rcas_4428  two component LuxR family transcriptional regulator  47.3 
 
 
231 aa  65.5  0.0000000005  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_4976  two component transcriptional regulator, LuxR family  38.93 
 
 
218 aa  65.9  0.0000000005  Conexibacter woesei DSM 14684  Bacteria  normal  0.289575  normal  0.034027 
 
 
-
 
NC_012791  Vapar_3592  two component transcriptional regulator, LuxR family  32.57 
 
 
235 aa  64.7  0.0000000009  Variovorax paradoxus S110  Bacteria  normal  0.356082  n/a   
 
 
-
 
NC_011884  Cyan7425_4561  two component transcriptional regulator, LuxR family  40.4 
 
 
217 aa  64.7  0.0000000009  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_3748  two component LuxR family transcriptional regulator  34.31 
 
 
211 aa  64.3  0.000000001  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.107866  normal 
 
 
-
 
NC_013521  Sked_03540  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  48.78 
 
 
226 aa  63.9  0.000000001  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_1951  two component transcriptional regulator, LuxR family  44.16 
 
 
226 aa  64.3  0.000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.0924411 
 
 
-
 
NC_011726  PCC8801_2623  two component transcriptional regulator, LuxR family  37.86 
 
 
210 aa  63.9  0.000000002  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_014210  Ndas_0346  two component transcriptional regulator, LuxR family  36.5 
 
 
210 aa  63.2  0.000000002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0205277  normal  0.823307 
 
 
-
 
NC_013161  Cyan8802_3480  two component transcriptional regulator, LuxR family  37.86 
 
 
210 aa  63.9  0.000000002  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.147525 
 
 
-
 
NC_008148  Rxyl_2629  two component LuxR family transcriptional regulator  37.86 
 
 
232 aa  63.2  0.000000002  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.312922  n/a   
 
 
-
 
NC_012669  Bcav_0717  two component transcriptional regulator, LuxR family  36.23 
 
 
209 aa  63.5  0.000000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.854815  normal  0.189113 
 
 
-
 
NC_009972  Haur_2171  two component LuxR family transcriptional regulator  34.53 
 
 
218 aa  63.5  0.000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.0762379  n/a   
 
 
-
 
NC_009523  RoseRS_4323  two component LuxR family transcriptional regulator  44.59 
 
 
246 aa  63.5  0.000000002  Roseiflexus sp. RS-1  Bacteria  normal  0.239635  normal  0.317944 
 
 
-
 
NC_013204  Elen_1743  two component transcriptional regulator, LuxR family  31.69 
 
 
214 aa  63.5  0.000000002  Eggerthella lenta DSM 2243  Bacteria  normal  0.370009  normal  0.039988 
 
 
-
 
NC_011658  BCAH187_A2375  DNA-binding response regulator, LuxR family  38.61 
 
 
209 aa  63.2  0.000000003  Bacillus cereus AH187  Bacteria  normal  0.248491  n/a   
 
 
-
 
NC_008726  Mvan_5522  two component LuxR family transcriptional regulator  35.56 
 
 
219 aa  62.8  0.000000003  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_3745  two component transcriptional regulator, LuxR family  50.77 
 
 
235 aa  62.4  0.000000004  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.627677  normal  0.255424 
 
 
-
 
NC_014212  Mesil_1051  two component transcriptional regulator, LuxR family  31.55 
 
 
211 aa  62.8  0.000000004  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.0337978 
 
 
-
 
NC_011729  PCC7424_5070  two component transcriptional regulator, LuxR family  41.43 
 
 
210 aa  62.4  0.000000005  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.744929 
 
 
-
 
NC_010338  Caul_0621  two component LuxR family transcriptional regulator  55.74 
 
 
212 aa  62.4  0.000000005  Caulobacter sp. K31  Bacteria  normal  normal  0.881689 
 
 
-
 
NC_011725  BCB4264_A2245  DNA-binding response regulator, LuxR family  36.89 
 
 
213 aa  62  0.000000005  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_37860  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  33.33 
 
 
221 aa  62  0.000000005  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_3459  ATP-dependent transcriptional regulator, MalT- like, LuxR family  43.97 
 
 
901 aa  62.4  0.000000005  Nakamurella multipartita DSM 44233  Bacteria  decreased coverage  0.000984222  hitchhiker  0.00326143 
 
 
-
 
NC_009664  Krad_1981  two component transcriptional regulator, LuxR family  50.7 
 
 
230 aa  62.4  0.000000005  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_1071  two component LuxR family transcriptional regulator  33.82 
 
 
209 aa  62.4  0.000000005  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_011772  BCG9842_B3078  DNA-binding response regulator, LuxR family  36.89 
 
 
213 aa  62  0.000000006  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.000000185138 
 
 
-
 
NC_007777  Francci3_1039  two component LuxR family transcriptional regulator  32.87 
 
 
238 aa  62  0.000000006  Frankia sp. CcI3  Bacteria  normal  normal  0.135118 
 
 
-
 
NC_013947  Snas_1903  two component transcriptional regulator, LuxR family  45.71 
 
 
225 aa  62  0.000000006  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.202425  normal  0.182857 
 
 
-
 
NC_008346  Swol_0186  response regulator receiver protein  30.82 
 
 
213 aa  62  0.000000006  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  decreased coverage  0.00000327076  n/a   
 
 
-
 
NC_013739  Cwoe_1298  two component transcriptional regulator, LuxR family  35.66 
 
 
228 aa  62  0.000000006  Conexibacter woesei DSM 14684  Bacteria  normal  0.70055  normal 
 
 
-
 
NC_009767  Rcas_3262  two component LuxR family transcriptional regulator  33.57 
 
 
222 aa  62  0.000000006  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.764026 
 
 
-
 
NC_010718  Nther_2325  two component transcriptional regulator, LuxR family  27.33 
 
 
228 aa  62  0.000000006  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_1011  two component transcriptional regulator, LuxR family  29.41 
 
 
203 aa  62  0.000000006  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.109267 
 
 
-
 
NC_009664  Krad_1998  two component transcriptional regulator, LuxR family  51.56 
 
 
225 aa  61.6  0.000000007  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.12496  normal 
 
 
-
 
NC_013947  Snas_1473  transcriptional regulator, LuxR family  30.72 
 
 
203 aa  61.6  0.000000007  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.569189  normal 
 
 
-
 
NC_003909  BCE_2293  LuxR family DNA-binding response regulator  36.19 
 
 
211 aa  61.6  0.000000008  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B1611  two component LuxR family transcriptional regulator  43.56 
 
 
215 aa  61.6  0.000000008  Burkholderia sp. 383  Bacteria  normal  0.650425  normal  0.234442 
 
 
-
 
NC_009921  Franean1_5512  two component LuxR family transcriptional regulator  32.87 
 
 
250 aa  61.6  0.000000008  Frankia sp. EAN1pec  Bacteria  normal  normal  0.631776 
 
 
-
 
NC_012669  Bcav_2482  two component transcriptional regulator, LuxR family  53.23 
 
 
208 aa  61.6  0.000000008  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0211915  normal  0.642006 
 
 
-
 
NC_013411  GYMC61_1243  transcriptional regulator, LuxR family  37.38 
 
 
550 aa  61.6  0.000000009  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_005945  BAS2109  LuxR family DNA-binding response regulator  37.62 
 
 
209 aa  61.6  0.000000009  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_2048  response regulator  37.62 
 
 
209 aa  61.6  0.000000009  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.102554  n/a   
 
 
-
 
NC_006274  BCZK2046  response regulator  37.62 
 
 
209 aa  61.6  0.000000009  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_3936  two component LuxR family transcriptional regulator  26.64 
 
 
213 aa  61.6  0.000000009  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00507176  n/a   
 
 
-
 
NC_007530  GBAA_2265  LuxR family DNA-binding response regulator  37.62 
 
 
209 aa  61.6  0.000000009  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.201191  n/a   
 
 
-
 
NC_013595  Sros_2533  response regulator receiver protein  43.02 
 
 
220 aa  61.2  0.000000009  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.495874 
 
 
-
 
NC_012853  Rleg_5633  two component transcriptional regulator, LuxR family  34.88 
 
 
203 aa  61.2  0.000000009  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.603295  normal 
 
 
-
 
NC_011773  BCAH820_2290  DNA-binding response regulator, LuxR family  37.62 
 
 
209 aa  61.6  0.000000009  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000000000736213 
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  50.82 
 
 
224 aa  61.2  0.000000009  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013441  Gbro_2881  response regulator receiver  35 
 
 
220 aa  61.2  0.000000009  Gordonia bronchialis DSM 43247  Bacteria  decreased coverage  0.00126066  n/a   
 
 
-
 
NC_014213  Mesil_3486  hypothetical protein  39.81 
 
 
206 aa  61.2  0.000000009  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_1966  two component transcriptional regulator, LuxR family  46.05 
 
 
218 aa  60.8  0.00000001  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1881  two component transcriptional regulator, LuxR family  46.05 
 
 
218 aa  60.8  0.00000001  Anaeromyxobacter sp. K  Bacteria  normal  0.0160211  n/a   
 
 
-
 
NC_013595  Sros_5304  response regulator receiver protein  47.3 
 
 
220 aa  61.2  0.00000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.128918  normal 
 
 
-
 
NC_012669  Bcav_1049  two component transcriptional regulator, LuxR family  45.57 
 
 
222 aa  61.2  0.00000001  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.661499  normal  0.245945 
 
 
-
 
NC_010184  BcerKBAB4_2087  two component LuxR family transcriptional regulator  35.92 
 
 
213 aa  60.8  0.00000001  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0358431  n/a   
 
 
-
 
NC_007760  Adeh_1997  two component LuxR family transcriptional regulator  46.05 
 
 
218 aa  60.8  0.00000001  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_21820  two component transcriptional regulator, LuxR family  27.66 
 
 
211 aa  61.2  0.00000001  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_2842  two component transcriptional regulator, LuxR family  49.23 
 
 
226 aa  61.2  0.00000001  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.622781  decreased coverage  0.00305681 
 
 
-
 
NC_007948  Bpro_3193  LuxR family transcriptional regulator  46.15 
 
 
895 aa  61.2  0.00000001  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_0533  two component LuxR family transcriptional regulator  49.3 
 
 
219 aa  61.2  0.00000001  Frankia sp. EAN1pec  Bacteria  normal  0.405575  normal 
 
 
-
 
NC_012669  Bcav_0236  two component transcriptional regulator, LuxR family  46.15 
 
 
224 aa  60.8  0.00000001  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_0367  transcriptional regulator, LuxR family  26.2 
 
 
556 aa  60.8  0.00000001  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A2275  LuxR family transcriptional regulator  27.14 
 
 
209 aa  60.8  0.00000001  Vibrio cholerae O395  Bacteria  normal  0.314776  n/a   
 
 
-
 
NC_012792  Vapar_5403  transcriptional regulator, LuxR family  50 
 
 
206 aa  60.8  0.00000001  Variovorax paradoxus S110  Bacteria  normal  0.497351  n/a   
 
 
-
 
NC_007413  Ava_4518  two component LuxR family transcriptional regulator  44.29 
 
 
236 aa  60.1  0.00000002  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_1651  two component transcriptional regulator, LuxR family  33.33 
 
 
218 aa  60.5  0.00000002  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.000163278  n/a   
 
 
-
 
NC_013521  Sked_29940  two component transcriptional regulator, LuxR family  47.69 
 
 
234 aa  60.1  0.00000002  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.683883 
 
 
-
 
NC_011071  Smal_2340  two component transcriptional regulator, LuxR family  48.39 
 
 
217 aa  60.1  0.00000002  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.273151  normal 
 
 
-
 
NC_013530  Xcel_0094  two component transcriptional regulator, LuxR family  41.94 
 
 
220 aa  60.5  0.00000002  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_0648  two component transcriptional regulator, LuxR family  50.82 
 
 
215 aa  60.5  0.00000002  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_39200  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  50 
 
 
218 aa  60.1  0.00000002  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.254077 
 
 
-
 
NC_013595  Sros_5905  response regulator receiver protein  45.45 
 
 
227 aa  60.1  0.00000002  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0252894  normal  0.145246 
 
 
-
 
NC_009487  SaurJH9_1902  two component LuxR family transcriptional regulator  28.78 
 
 
207 aa  60.1  0.00000002  Staphylococcus aureus subsp. aureus JH9  Bacteria  hitchhiker  0.00000041006  n/a   
 
 
-
 
NC_009523  RoseRS_4275  two component LuxR family transcriptional regulator  33.55 
 
 
226 aa  60.1  0.00000002  Roseiflexus sp. RS-1  Bacteria  normal  0.798613  normal  0.287125 
 
 
-
 
NC_009632  SaurJH1_1936  response regulator receiver  28.78 
 
 
207 aa  60.1  0.00000002  Staphylococcus aureus subsp. aureus JH1  Bacteria  unclonable  0.000000150819  n/a   
 
 
-
 
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