| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5403 |
|---|
| Symbol | |
|---|
| ID | 7975864 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | - |
|---|
| Start bp | 108223 |
|---|
| End bp | 108843 |
|---|
| Gene Length | 621 bp |
|---|
| Protein Length | 206 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644795992 |
|---|
| Product | transcriptional regulator, LuxR family |
|---|
| Protein accession | YP_002947266 |
|---|
| Protein GI | 239820081 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.497351 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGGTT CCCTCGATCT GTACGTGCGC GTATGCCATG GCGACCCGCT CGCCATGGCC
GGTCTCGTCT CGCTCATCGG CGAGGAACCG GGTCTTCAGG TGCAGGCGGA GAACGAGCCC
GGCGAGGGCA TGGCGGATGT GGTCGTGGCT GACCATGCCT GCGCGCTGAA CCTGCTCGCT
TCGGCTTCGG CAGTGGATCA GCCGGGGGTG GCAGGCGGCT TTCGCATGCC GCGCGTCATC
GTCTTGACGC GGCGGGACAA GGAGGGGGAG GTCATGCGGG CGATCGCCAG CGGGGCGCAC
GGCTATGTGC GCCAGGACGC GGATCCGGCC GAGCTGATGG ATGCCATTCG CCACGTGGCT
CGGGGGGGCT CTCTCTATCT ATGCAAGGGC ACGAAGGCGC TCATCAGGCA CGGCAAGCCG
TGCGTGGGCT TCACCGCCCG GGAGGAGGAC GTGCTGCGCT ACCTGGTGAA AGGCGATTGC
AACAAGGGAA TCGCCCGCGA GCTGGACATT TCCGCTAATA CCGTCAAGGC ACACGTCGCC
CGGATCTGCG AGAAGCTGCA CGTGGGCTCG AGGGCGCAAG TCGCCGCCAA GGCGACGCAG
CGCGGGCTGG TCCGTGTCTG A
|
|---|
| Protein sequence | MTGSLDLYVR VCHGDPLAMA GLVSLIGEEP GLQVQAENEP GEGMADVVVA DHACALNLLA
SASAVDQPGV AGGFRMPRVI VLTRRDKEGE VMRAIASGAH GYVRQDADPA ELMDAIRHVA
RGGSLYLCKG TKALIRHGKP CVGFTAREED VLRYLVKGDC NKGIARELDI SANTVKAHVA
RICEKLHVGS RAQVAAKATQ RGLVRV
|
|---|
| |