More than 300 homologs were found in PanDaTox collection
for query gene Vapar_5403 on replicon NC_012792
Organism: Variovorax paradoxus S110



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_012792  Vapar_5403  transcriptional regulator, LuxR family  100 
 
 		 206 aa  414  9.999999999999999e-116  Variovorax paradoxus S110  Bacteria  normal  0.497351  n/a   
 
 
-
 
NC_013595  Sros_1936  response regulator receiver protein  35.86 
 
 		 205 aa  96.7  2e-19  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013174  Jden_1873  two component transcriptional regulator, LuxR family  33.19 
 
 		 233 aa  96.3  3e-19  Jonesia denitrificans DSM 20603  Bacteria  normal  0.145213  normal  0.385799 
 
 
-
 
NC_013947  Snas_3811  two component transcriptional regulator, LuxR family  39.69 
 
 		 206 aa  95.9  4e-19  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  hitchhiker  0.00252848 
 
 
-
 
NC_014165  Tbis_0228  LuxR family two component transcriptional regulator  42.42 
 
 		 206 aa  95.1  6e-19  Thermobispora bispora DSM 43833  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013739  Cwoe_0262  two component transcriptional regulator, LuxR family  36.45 
 
 		 225 aa  92.4  4e-18  Conexibacter woesei DSM 14684  Bacteria  normal  0.0721339  normal  0.623073 
 
 
-
 
NC_009972  Haur_1600  two component LuxR family transcriptional regulator  43.18 
 
 		 207 aa  92  5e-18  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  1  n/a   
 
 
-
 
NC_013521  Sked_29940  two component transcriptional regulator, LuxR family  34.93 
 
 		 234 aa  92  6e-18  Sanguibacter keddieii DSM 10542  Bacteria  normal  1  normal  0.683883 
 
 
-
 
NC_007412  Ava_C0116  two component LuxR family transcriptional regulator  34.93 
 
 		 209 aa  91.3  9e-18  Anabaena variabilis ATCC 29413  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009767  Rcas_1355  two component LuxR family transcriptional regulator  35.29 
 
 		 230 aa  91.3  1e-17  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013235  Namu_3632  two component transcriptional regulator, LuxR family  43.18 
 
 		 209 aa  90.1  2e-17  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00835522  normal  0.0174868 
 
 
-
 
NC_011138  MADE_03853  transcriptional regulator NarL  33.33 
 
 		 217 aa  90.5  2e-17  Alteromonas macleodii 'Deep ecotype'  Bacteria  unclonable  0.0000020037  n/a   
 
 
-
 
NC_014151  Cfla_0278  two component transcriptional regulator, LuxR family  34.08 
 
 		 225 aa  89.7  3e-17  Cellulomonas flavigena DSM 20109  Bacteria  normal  1  hitchhiker  0.000789071 
 
 
-
 
NC_014210  Ndas_0346  two component transcriptional regulator, LuxR family  38.46 
 
 		 210 aa  89  4e-17  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0205277  normal  0.823307 
 
 
-
 
NC_008699  Noca_2635  response regulator receiver  41.73 
 
 		 207 aa  89.4  4e-17  Nocardioides sp. JS614  Bacteria  normal  1  n/a   
 
 
-
 
NC_013172  Bfae_11600  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  33.33 
 
 		 225 aa  89  4e-17  Brachybacterium faecium DSM 4810  Bacteria  decreased coverage  0.00120804  n/a   
 
 
-
 
NC_009523  RoseRS_4275  two component LuxR family transcriptional regulator  34.63 
 
 		 226 aa  89  4e-17  Roseiflexus sp. RS-1  Bacteria  normal  0.798613  normal  0.287125 
 
 
-
 
NC_013595  Sros_4672  response regulator receiver protein  31.8 
 
 		 212 aa  89  5e-17  Streptosporangium roseum DSM 43021  Bacteria  normal  0.223352  normal  0.339353 
 
 
-
 
NC_009664  Krad_1198  two component transcriptional regulator, LuxR family  33.49 
 
 		 225 aa  89  5e-17  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.109916  normal  0.0247339 
 
 
-
 
NC_013235  Namu_4606  two component transcriptional regulator, LuxR family  34.67 
 
 		 207 aa  88.6  6e-17  Nakamurella multipartita DSM 44233  Bacteria  normal  1  normal  0.296562 
 
 
-
 
NC_008010  Dgeo_2486  two component LuxR family transcriptional regulator  41.41 
 
 		 208 aa  88.6  6e-17  Deinococcus geothermalis DSM 11300  Bacteria  normal  1  n/a   
 
 
-
 
NC_013595  Sros_0928  response regulator receiver protein  34.47 
 
 		 207 aa  88.6  6e-17  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0707495  normal  1 
 
 
-
 
NC_011899  Hore_19700  two component transcriptional regulator, LuxR family  41.98 
 
 		 209 aa  88.2  7e-17  Halothermothrix orenii H 168  Bacteria  normal  1  n/a   
 
 
-
 
NC_013947  Snas_3745  two component transcriptional regulator, LuxR family  33.01 
 
 		 235 aa  88.2  8e-17  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.627677  normal  0.255424 
 
 
-
 
NC_010625  Bphy_5955  two component LuxR family transcriptional regulator  33.84 
 
 		 215 aa  87.8  9e-17  Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.132796 
 
 
-
 
NC_012669  Bcav_2482  two component transcriptional regulator, LuxR family  33.83 
 
 		 208 aa  88.2  9e-17  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0211915  normal  0.642006 
 
 
-
 
NC_013159  Svir_26840  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  32.29 
 
 		 239 aa  87.4  1e-16  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.274056  normal  0.228776 
 
 
-
 
NC_008340  Mlg_1669  two component LuxR family transcriptional regulator  30.73 
 
 		 221 aa  87.8  1e-16  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011899  Hore_21820  two component transcriptional regulator, LuxR family  38.46 
 
 		 211 aa  87.4  1e-16  Halothermothrix orenii H 168  Bacteria  normal  1  n/a   
 
 
-
 
NC_007404  Tbd_2464  two component LuxR family transcriptional regulator  35.77 
 
 		 221 aa  86.7  2e-16  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011886  Achl_3380  two component transcriptional regulator, LuxR family  29.07 
 
 		 222 aa  86.7  2e-16  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  1 
 
 
-
 
NC_011830  Dhaf_2789  two component transcriptional regulator, LuxR family  32.09 
 
 		 212 aa  86.7  2e-16  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.246733  n/a   
 
 
-
 
NC_008463  PA14_13730  transcriptional regulator NarL  32.64 
 
 		 219 aa  87  2e-16  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  0.817999 
 
 
-
 
NC_008699  Noca_1438  response regulator receiver  33.17 
 
 		 213 aa  86.7  2e-16  Nocardioides sp. JS614  Bacteria  normal  0.494689  n/a   
 
 
-
 
NC_012792  Vapar_5404  transcriptional regulator, LuxR family  33.5 
 
 		 208 aa  87  2e-16  Variovorax paradoxus S110  Bacteria  normal  0.803003  n/a   
 
 
-
 
NC_013947  Snas_2469  two component transcriptional regulator, LuxR family  33.18 
 
 		 214 aa  87  2e-16  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.126163  normal  1 
 
 
-
 
NC_005945  BAS5263  DNA-binding response regulator  37.68 
 
 		 215 aa  86.3  3e-16  Bacillus anthracis str. Sterne  Bacteria  normal  0.24037  n/a   
 
 
-
 
NC_005957  BT9727_5091  response regulator  37.68 
 
 		 215 aa  86.3  3e-16  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  1  n/a   
 
 
-
 
NC_006274  BCZK5108  response regulator  37.68 
 
 		 215 aa  86.3  3e-16  Bacillus cereus E33L  Bacteria  decreased coverage  0.00235048  n/a   
 
 
-
 
NC_007530  GBAA_5661  DNA-binding response regulator  37.68 
 
 		 215 aa  86.3  3e-16  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  1  n/a   
 
 
-
 
NC_008148  Rxyl_0160  two component LuxR family transcriptional regulator  32.24 
 
 		 212 aa  86.3  3e-16  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  1  n/a   
 
 
-
 
NC_011773  BCAH820_5506  DNA-binding response regulator  37.68 
 
 		 215 aa  86.3  3e-16  Bacillus cereus AH820  Bacteria  n/a    normal  1 
 
 
-
 
NC_010184  BcerKBAB4_5205  two component LuxR family transcriptional regulator  37.68 
 
 		 215 aa  85.9  4e-16  Bacillus weihenstephanensis KBAB4  Bacteria  normal  1  n/a   
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  32.11 
 
 		 216 aa  85.9  4e-16  Clostridium thermocellum ATCC 27405  Bacteria  normal  1  n/a   
 
 
-
 
NC_009767  Rcas_4227  two component LuxR family transcriptional regulator  36.04 
 
 		 213 aa  85.9  4e-16  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  0.624898 
 
 
-
 
NC_007298  Daro_0834  LuxR response regulator receiver  37.01 
 
 		 221 aa  85.5  5e-16  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  0.0179337 
 
 
-
 
NC_013947  Snas_3359  two component transcriptional regulator, LuxR family  33.33 
 
 		 219 aa  85.5  5e-16  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0172663  normal  1 
 
 
-
 
NC_008025  Dgeo_0555  two component LuxR family transcriptional regulator  34.3 
 
 		 228 aa  85.1  6e-16  Deinococcus geothermalis DSM 11300  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013530  Xcel_1619  two component transcriptional regulator, LuxR family  34.53 
 
 		 234 aa  85.1  6e-16  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  1  n/a   
 
 
-
 
NC_013595  Sros_4468  response regulator receiver protein  33.18 
 
 		 219 aa  85.1  6e-16  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0876299  normal  0.32237 
 
 
-
 
NC_012793  GWCH70_3043  two component transcriptional regulator, LuxR family  37.41 
 
 		 225 aa  85.1  7e-16  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000652561  n/a   
 
 
-
 
NC_009656  PSPA7_1229  transcriptional regulator NarL  31.22 
 
 		 219 aa  85.1  7e-16  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_013093  Amir_4511  two component transcriptional regulator, LuxR family  34.2 
 
 		 226 aa  84.7  8e-16  Actinosynnema mirum DSM 43827  Bacteria  normal  0.11054  n/a   
 
 
-
 
NC_013172  Bfae_05830  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  31.14 
 
 		 238 aa  84.7  8e-16  Brachybacterium faecium DSM 4810  Bacteria  normal  0.388223  n/a   
 
 
-
 
NC_011725  BCB4264_A5535  DNA-binding response regulator  36.96 
 
 		 215 aa  84  0.000000000000001  Bacillus cereus B4264  Bacteria  normal  1  n/a   
 
 
-
 
NC_013205  Aaci_0516  two component transcriptional regulator, LuxR family  34.53 
 
 		 231 aa  84.3  0.000000000000001  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  1  n/a   
 
 
-
 
NC_008699  Noca_1020  response regulator receiver  34.26 
 
 		 218 aa  84  0.000000000000001  Nocardioides sp. JS614  Bacteria  normal  0.648692  n/a   
 
 
-
 
NC_013521  Sked_08490  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  30.21 
 
 		 236 aa  84  0.000000000000001  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.199706  normal  0.526513 
 
 
-
 
NC_013946  Mrub_1071  two component LuxR family transcriptional regulator  32.84 
 
 		 209 aa  84.3  0.000000000000001  Meiothermus ruber DSM 1279  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011772  BCG9842_B5417  DNA-binding response regulator  36.23 
 
 		 215 aa  84  0.000000000000001  Bacillus cereus G9842  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013595  Sros_1523  response regulator receiver protein  34.15 
 
 		 215 aa  84  0.000000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.894169  normal  0.0152488 
 
 
-
 
NC_003909  BCE_5540  DNA-binding response regulator  36.96 
 
 		 215 aa  83.2  0.000000000000002  Bacillus cereus ATCC 10987  Bacteria  normal  1  n/a   
 
 
-
 
NC_014212  Mesil_1051  two component transcriptional regulator, LuxR family  35.07 
 
 		 211 aa  83.6  0.000000000000002  Meiothermus silvanus DSM 9946  Bacteria  normal  1  normal  0.0337978 
 
 
-
 
NC_012669  Bcav_0236  two component transcriptional regulator, LuxR family  31.51 
 
 		 224 aa  83.2  0.000000000000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011658  BCAH187_A5591  DNA-binding response regulator  36.96 
 
 		 215 aa  83.6  0.000000000000002  Bacillus cereus AH187  Bacteria  normal  1  n/a   
 
 
-
 
NC_008148  Rxyl_2613  two component LuxR family transcriptional regulator  31.6 
 
 		 207 aa  83.6  0.000000000000002  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  1  n/a   
 
 
-
 
NC_008740  Maqu_3089  two component LuxR family transcriptional regulator  35.29 
 
 		 219 aa  83.6  0.000000000000002  Marinobacter aquaeolei VT8  Bacteria  normal  1  n/a   
 
 
-
 
NC_013093  Amir_6405  two component transcriptional regulator, LuxR family  32.13 
 
 		 225 aa  83.2  0.000000000000002  Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_013170  Ccur_01320  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  38.13 
 
 		 261 aa  83.6  0.000000000000002  Cryptobacterium curtum DSM 15641  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013757  Gobs_1030  two component transcriptional regulator, LuxR family  34.47 
 
 		 212 aa  84  0.000000000000002  Geodermatophilus obscurus DSM 43160  Bacteria  normal  1  n/a   
 
 
-
 
NC_013411  GYMC61_3240  two component transcriptional regulator, LuxR family  37.67 
 
 		 224 aa  83.2  0.000000000000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007777  Francci3_1039  two component LuxR family transcriptional regulator  36.36 
 
 		 238 aa  82.8  0.000000000000003  Frankia sp. CcI3  Bacteria  normal  1  normal  0.135118 
 
 
-
 
NC_011353  ECH74115_3330  transcriptional regulator NarP  31.94 
 
 		 215 aa  83.2  0.000000000000003  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013131  Caci_8900  two component transcriptional regulator, LuxR family  33.18 
 
 		 221 aa  82.8  0.000000000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.967084  normal  1 
 
 
-
 
NC_013946  Mrub_0806  two component LuxR family transcriptional regulator  30.05 
 
 		 216 aa  82.8  0.000000000000003  Meiothermus ruber DSM 1279  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014210  Ndas_4652  two component transcriptional regulator, LuxR family  33.8 
 
 		 219 aa  83.2  0.000000000000003  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0949639  normal  1 
 
 
-
 
NC_013595  Sros_2533  response regulator receiver protein  31.48 
 
 		 220 aa  82.8  0.000000000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  0.495874 
 
 
-
 
CP001509  ECD_02120  DNA-binding response regulator in two-component regulatory system with NarQ or NarX  31.78 
 
 		 215 aa  82.8  0.000000000000004  Escherichia coli BL21(DE3)  Bacteria  normal  1  n/a   
 
 
-
 
NC_010498  EcSMS35_2341  transcriptional regulator NarP  31.78 
 
 		 215 aa  82.8  0.000000000000004  Escherichia coli SMS-3-5  Bacteria  normal  1  normal  0.277554 
 
 
-
 
NC_012803  Mlut_21900  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  33.04 
 
 		 230 aa  82.8  0.000000000000004  Micrococcus luteus NCTC 2665  Bacteria  hitchhiker  0.00486265  n/a   
 
 
-
 
NC_010468  EcolC_1457  transcriptional regulator NarP  31.78 
 
 		 215 aa  82.8  0.000000000000004  Escherichia coli ATCC 8739  Bacteria  normal  1  normal  0.956805 
 
 
-
 
NC_012892  B21_02079  hypothetical protein  31.78 
 
 		 215 aa  82.8  0.000000000000004  Escherichia coli BL21  Bacteria  normal  1  n/a   
 
 
-
 
NC_007947  Mfla_0445  two component LuxR family transcriptional regulator  37.41 
 
 		 212 aa  82.4  0.000000000000004  Methylobacillus flagellatus KT  Bacteria  decreased coverage  0.0000000143028  normal  0.869605 
 
 
-
 
NC_010658  SbBS512_E0748  transcriptional regulator NarP  31.78 
 
 		 215 aa  82.8  0.000000000000004  Shigella boydii CDC 3083-94  Bacteria  normal  0.251733  n/a   
 
 
-
 
NC_008726  Mvan_5474  two component LuxR family transcriptional regulator  39.23 
 
 		 212 aa  82.4  0.000000000000004  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.344108  normal  0.73382 
 
 
-
 
NC_014210  Ndas_4417  two component transcriptional regulator, LuxR family  32.37 
 
 		 232 aa  82.4  0.000000000000004  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009664  Krad_4217  two component transcriptional regulator, LuxR family  34.38 
 
 		 225 aa  82.8  0.000000000000004  Kineococcus radiotolerans SRS30216  Bacteria  decreased coverage  0.000816589  normal  0.757819 
 
 
-
 
NC_009800  EcHS_A2331  transcriptional regulator NarP  31.78 
 
 		 215 aa  82.8  0.000000000000004  Escherichia coli HS  Bacteria  normal  1  n/a   
 
 
-
 
NC_009801  EcE24377A_2492  transcriptional regulator NarP  31.78 
 
 		 215 aa  82.8  0.000000000000004  Escherichia coli E24377A  Bacteria  normal  1  n/a   
 
 
-
 
NC_013131  Caci_7346  two component transcriptional regulator, LuxR family  33.01 
 
 		 211 aa  82.4  0.000000000000004  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  0.0451998 
 
 
-
 
NC_009953  Sare_4860  two component LuxR family transcriptional regulator  33.49 
 
 		 219 aa  82.4  0.000000000000004  Salinispora arenicola CNS-205  Bacteria  normal  0.452521  normal  0.0798716 
 
 
-
 
NC_013595  Sros_3244  response regulator receiver protein  31.51 
 
 		 218 aa  82.4  0.000000000000004  Streptosporangium roseum DSM 43021  Bacteria  hitchhiker  0.000568428  normal  0.332742 
 
 
-
 
NC_013131  Caci_6980  two component transcriptional regulator, LuxR family  31.4 
 
 		 213 aa  82  0.000000000000005  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  0.999676 
 
 
-
 
NC_009380  Strop_2458  response regulator receiver  33.02 
 
 		 220 aa  82.4  0.000000000000005  Salinispora tropica CNB-440  Bacteria  normal  0.0554598  normal  1 
 
 
-
 
NC_013510  Tcur_2302  two component transcriptional regulator, LuxR family  35.92 
 
 		 226 aa  81.6  0.000000000000007  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0191252  n/a   
 
 
-
 
NC_013530  Xcel_2717  two component transcriptional regulator, LuxR family  32.58 
 
 		 223 aa  81.6  0.000000000000007  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  1  n/a   
 
 
-
 
NC_014211  Ndas_4872  two component transcriptional regulator, LuxR family  33.49 
 
 		 232 aa  81.6  0.000000000000007  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.247388  normal  1 
 
 
-
 
NC_012669  Bcav_2822  two component transcriptional regulator, LuxR family  31.14 
 
 		 231 aa  81.6  0.000000000000007  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.311075  normal  1 
 
 
-
 
NC_013235  Namu_0765  two component transcriptional regulator, LuxR family  33.82 
 
 		 222 aa  81.6  0.000000000000008  Nakamurella multipartita DSM 44233  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013947  Snas_0625  two component transcriptional regulator, LuxR family  30.18 
 
 		 216 aa  81.6  0.000000000000008  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.732521  normal  1 
 
 
-
 
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