More than 300 homologs were found in PanDaTox collection
for query gene Ndas_4652 on replicon NC_014210
Organism: Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_014210  Ndas_4652  two component transcriptional regulator, LuxR family  100 
 
 
219 aa  427  1e-119  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0949639  normal 
 
 
-
 
NC_013595  Sros_4468  response regulator receiver protein  86.3 
 
 
219 aa  370  1e-101  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0876299  normal  0.32237 
 
 
-
 
NC_009380  Strop_2458  response regulator receiver  84.93 
 
 
220 aa  365  1e-100  Salinispora tropica CNB-440  Bacteria  normal  0.0554598  normal 
 
 
-
 
NC_009953  Sare_4860  two component LuxR family transcriptional regulator  85.39 
 
 
219 aa  363  1e-100  Salinispora arenicola CNS-205  Bacteria  normal  0.452521  normal  0.0798716 
 
 
-
 
NC_013947  Snas_3359  two component transcriptional regulator, LuxR family  80.82 
 
 
219 aa  351  4e-96  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0172663  normal 
 
 
-
 
NC_013530  Xcel_1619  two component transcriptional regulator, LuxR family  81.65 
 
 
234 aa  347  7e-95  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_2599  two component transcriptional regulator, LuxR family  78.67 
 
 
211 aa  324  5e-88  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_7415  two component transcriptional regulator, LuxR family  70.78 
 
 
228 aa  298  4e-80  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.933403  normal 
 
 
-
 
NC_009664  Krad_4217  two component transcriptional regulator, LuxR family  69.51 
 
 
225 aa  286  2e-76  Kineococcus radiotolerans SRS30216  Bacteria  decreased coverage  0.000816589  normal  0.757819 
 
 
-
 
NC_013093  Amir_2811  two component transcriptional regulator, LuxR family  70 
 
 
217 aa  248  4e-65  Actinosynnema mirum DSM 43827  Bacteria  normal  0.206772  n/a   
 
 
-
 
NC_013131  Caci_8900  two component transcriptional regulator, LuxR family  59.91 
 
 
221 aa  239  2e-62  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.967084  normal 
 
 
-
 
NC_013595  Sros_5905  response regulator receiver protein  59.46 
 
 
227 aa  236  2e-61  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0252894  normal  0.145246 
 
 
-
 
NC_013947  Snas_1903  two component transcriptional regulator, LuxR family  58.45 
 
 
225 aa  234  5.0000000000000005e-61  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.202425  normal  0.182857 
 
 
-
 
NC_013739  Cwoe_1269  two component transcriptional regulator, LuxR family  58.14 
 
 
226 aa  234  6e-61  Conexibacter woesei DSM 14684  Bacteria  normal  hitchhiker  0.00432991 
 
 
-
 
NC_013093  Amir_7009  two component transcriptional regulator, LuxR family  58.72 
 
 
218 aa  234  9e-61  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0896567  n/a   
 
 
-
 
NC_014165  Tbis_1846  LuxR family two component transcriptional regulator  59.73 
 
 
226 aa  234  9e-61  Thermobispora bispora DSM 43833  Bacteria  normal  0.699471  normal 
 
 
-
 
NC_009664  Krad_1198  two component transcriptional regulator, LuxR family  58.18 
 
 
225 aa  233  1.0000000000000001e-60  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.109916  normal  0.0247339 
 
 
-
 
NC_013739  Cwoe_1616  two component transcriptional regulator, LuxR family  58.59 
 
 
229 aa  233  2.0000000000000002e-60  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_1020  response regulator receiver  58.41 
 
 
218 aa  231  8.000000000000001e-60  Nocardioides sp. JS614  Bacteria  normal  0.648692  n/a   
 
 
-
 
NC_013947  Snas_1740  two component transcriptional regulator, LuxR family  56.82 
 
 
228 aa  230  1e-59  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_2037  two component transcriptional regulator, LuxR family  54.88 
 
 
225 aa  229  3e-59  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.137578 
 
 
-
 
NC_013159  Svir_26840  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  55.45 
 
 
239 aa  227  8e-59  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.274056  normal  0.228776 
 
 
-
 
NC_013131  Caci_0956  two component transcriptional regulator, LuxR family  57.73 
 
 
221 aa  227  1e-58  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_4937  two component transcriptional regulator, LuxR family  59.26 
 
 
224 aa  225  3e-58  Conexibacter woesei DSM 14684  Bacteria  normal  0.570807  normal  0.210467 
 
 
-
 
NC_013595  Sros_5304  response regulator receiver protein  57.67 
 
 
220 aa  225  5.0000000000000005e-58  Streptosporangium roseum DSM 43021  Bacteria  normal  0.128918  normal 
 
 
-
 
NC_013595  Sros_3244  response regulator receiver protein  57.67 
 
 
218 aa  225  5.0000000000000005e-58  Streptosporangium roseum DSM 43021  Bacteria  hitchhiker  0.000568428  normal  0.332742 
 
 
-
 
NC_013510  Tcur_2302  two component transcriptional regulator, LuxR family  56.36 
 
 
226 aa  224  8e-58  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0191252  n/a   
 
 
-
 
NC_013093  Amir_2737  two component transcriptional regulator, LuxR family  56.76 
 
 
227 aa  224  8e-58  Actinosynnema mirum DSM 43827  Bacteria  normal  0.418014  n/a   
 
 
-
 
NC_013510  Tcur_4491  two component transcriptional regulator, LuxR family  56.16 
 
 
225 aa  223  1e-57  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_6235  two component transcriptional regulator, LuxR family  57.08 
 
 
215 aa  223  3e-57  Actinosynnema mirum DSM 43827  Bacteria  normal  0.502704  n/a   
 
 
-
 
NC_013947  Snas_2557  two component transcriptional regulator, LuxR family  55.25 
 
 
224 aa  223  3e-57  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.231398  normal  0.0978001 
 
 
-
 
NC_013595  Sros_8793  response regulator receiver protein  53.95 
 
 
221 aa  223  3e-57  Streptosporangium roseum DSM 43021  Bacteria  normal  0.321987  normal 
 
 
-
 
NC_013131  Caci_8412  two component transcriptional regulator, LuxR family  55 
 
 
239 aa  221  4.9999999999999996e-57  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_5619  response regulator receiver protein  56.48 
 
 
226 aa  220  9.999999999999999e-57  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0556461  normal  0.802866 
 
 
-
 
NC_013131  Caci_7812  two component transcriptional regulator, LuxR family  56.25 
 
 
227 aa  219  1.9999999999999999e-56  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_5644  two component transcriptional regulator, LuxR family  55 
 
 
225 aa  219  1.9999999999999999e-56  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.114252 
 
 
-
 
NC_013947  Snas_2469  two component transcriptional regulator, LuxR family  58.6 
 
 
214 aa  220  1.9999999999999999e-56  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.126163  normal 
 
 
-
 
NC_014151  Cfla_0278  two component transcriptional regulator, LuxR family  53.7 
 
 
225 aa  219  1.9999999999999999e-56  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.000789071 
 
 
-
 
NC_014165  Tbis_0951  LuxR family two component transcriptional regulator  55 
 
 
221 aa  219  3e-56  Thermobispora bispora DSM 43833  Bacteria  normal  0.392411  normal  0.343359 
 
 
-
 
NC_012669  Bcav_0102  two component transcriptional regulator, LuxR family  56.07 
 
 
221 aa  219  3e-56  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0637251  normal 
 
 
-
 
NC_013131  Caci_1951  two component transcriptional regulator, LuxR family  55.66 
 
 
226 aa  218  3.9999999999999997e-56  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.0924411 
 
 
-
 
NC_013595  Sros_7301  response regulator receiver protein  54.59 
 
 
220 aa  216  2e-55  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_1972  two component transcriptional regulator, LuxR family  53.74 
 
 
217 aa  216  2.9999999999999998e-55  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  unclonable  0.0000000794288  unclonable  0.0000000332591 
 
 
-
 
NC_013595  Sros_2533  response regulator receiver protein  52.56 
 
 
220 aa  216  2.9999999999999998e-55  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.495874 
 
 
-
 
NC_014211  Ndas_4872  two component transcriptional regulator, LuxR family  52.09 
 
 
232 aa  215  5e-55  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.247388  normal 
 
 
-
 
NC_013093  Amir_4051  two component transcriptional regulator, LuxR family  56.22 
 
 
225 aa  214  5.9999999999999996e-55  Actinosynnema mirum DSM 43827  Bacteria  decreased coverage  0.00308286  n/a   
 
 
-
 
NC_013521  Sked_21600  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  52.31 
 
 
222 aa  214  5.9999999999999996e-55  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.49613  normal 
 
 
-
 
NC_012669  Bcav_1049  two component transcriptional regulator, LuxR family  55 
 
 
222 aa  213  9.999999999999999e-55  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.661499  normal  0.245945 
 
 
-
 
NC_009664  Krad_1998  two component transcriptional regulator, LuxR family  54.75 
 
 
225 aa  213  1.9999999999999998e-54  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.12496  normal 
 
 
-
 
NC_014210  Ndas_1477  two component transcriptional regulator, LuxR family  54.3 
 
 
234 aa  213  1.9999999999999998e-54  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.594471  normal 
 
 
-
 
NC_013739  Cwoe_0356  two component transcriptional regulator, LuxR family  56.07 
 
 
220 aa  213  1.9999999999999998e-54  Conexibacter woesei DSM 14684  Bacteria  normal  0.165726  normal  0.0985551 
 
 
-
 
NC_012669  Bcav_0404  two component transcriptional regulator, LuxR family  55.14 
 
 
218 aa  213  1.9999999999999998e-54  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0987348  normal 
 
 
-
 
NC_014158  Tpau_2872  two component transcriptional regulator, LuxR family  52.94 
 
 
218 aa  213  1.9999999999999998e-54  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_4479  two component transcriptional regulator, LuxR family  53 
 
 
224 aa  213  2.9999999999999995e-54  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.518456  normal  0.598935 
 
 
-
 
NC_013595  Sros_1523  response regulator receiver protein  50.47 
 
 
215 aa  212  3.9999999999999995e-54  Streptosporangium roseum DSM 43021  Bacteria  normal  0.894169  normal  0.0152488 
 
 
-
 
NC_013441  Gbro_3238  regulatory protein LuxR  50 
 
 
228 aa  212  3.9999999999999995e-54  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_3912  two component transcriptional regulator, LuxR family  52.94 
 
 
230 aa  211  4.9999999999999996e-54  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_009953  Sare_1782  two component LuxR family transcriptional regulator  54.09 
 
 
230 aa  211  5.999999999999999e-54  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.0025253 
 
 
-
 
NC_013441  Gbro_4119  response regulator receiver  50 
 
 
230 aa  211  5.999999999999999e-54  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_008697  Noca_4902  response regulator receiver  57.01 
 
 
216 aa  211  7.999999999999999e-54  Nocardioides sp. JS614  Bacteria  normal  0.443208  normal  0.676579 
 
 
-
 
NC_012803  Mlut_21900  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  53.74 
 
 
230 aa  211  7.999999999999999e-54  Micrococcus luteus NCTC 2665  Bacteria  hitchhiker  0.00486265  n/a   
 
 
-
 
NC_012669  Bcav_1731  two component transcriptional regulator, LuxR family  54.21 
 
 
224 aa  211  7.999999999999999e-54  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.550315  normal 
 
 
-
 
NC_013739  Cwoe_0676  two component transcriptional regulator, LuxR family  53.74 
 
 
215 aa  210  1e-53  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_0110  two component transcriptional regulator, LuxR family  51.38 
 
 
222 aa  211  1e-53  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_7161  two component LuxR family transcriptional regulator  53.7 
 
 
225 aa  210  1e-53  Frankia sp. EAN1pec  Bacteria  normal  0.0588186  normal  0.118819 
 
 
-
 
NC_010816  BLD_0671  putative response regulator  51.24 
 
 
248 aa  210  1e-53  Bifidobacterium longum DJO10A  Bacteria  normal  0.248332  n/a   
 
 
-
 
NC_013947  Snas_4946  two component transcriptional regulator, LuxR family  50.46 
 
 
224 aa  210  1e-53  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.13115  normal 
 
 
-
 
NC_013947  Snas_3639  two component transcriptional regulator, LuxR family  51.4 
 
 
215 aa  210  1e-53  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.274763  normal 
 
 
-
 
NC_011886  Achl_2270  two component transcriptional regulator, LuxR family  52.86 
 
 
242 aa  210  2e-53  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000000000113212 
 
 
-
 
NC_012669  Bcav_3028  two component transcriptional regulator, LuxR family  55.81 
 
 
225 aa  209  2e-53  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.211566  decreased coverage  0.0000266978 
 
 
-
 
NC_007333  Tfu_1403  LuxR response regulator receiver  54.38 
 
 
214 aa  209  3e-53  Thermobifida fusca YX  Bacteria  normal  0.676683  n/a   
 
 
-
 
NC_013947  Snas_4575  two component transcriptional regulator, LuxR family  55.05 
 
 
224 aa  209  3e-53  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.703378  normal  0.112036 
 
 
-
 
NC_008541  Arth_4134  two component LuxR family transcriptional regulator  48.35 
 
 
250 aa  209  4e-53  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_1350  two component transcriptional regulator, LuxR family  54.39 
 
 
249 aa  209  4e-53  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.691965  normal 
 
 
-
 
NC_013521  Sked_03540  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  52.25 
 
 
226 aa  209  4e-53  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_3768  two component transcriptional regulator, LuxR family  54.75 
 
 
223 aa  208  5e-53  Conexibacter woesei DSM 14684  Bacteria  normal  0.28303  normal  0.763501 
 
 
-
 
NC_013530  Xcel_1633  two component transcriptional regulator, LuxR family  57.8 
 
 
241 aa  208  5e-53  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.457155  n/a   
 
 
-
 
NC_013172  Bfae_11600  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  53.42 
 
 
225 aa  208  5e-53  Brachybacterium faecium DSM 4810  Bacteria  decreased coverage  0.00120804  n/a   
 
 
-
 
NC_013530  Xcel_2601  two component transcriptional regulator, LuxR family  53.3 
 
 
234 aa  208  6e-53  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.1212  n/a   
 
 
-
 
NC_008699  Noca_3643  two component LuxR family transcriptional regulator  54.42 
 
 
215 aa  208  6e-53  Nocardioides sp. JS614  Bacteria  normal  0.516516  n/a   
 
 
-
 
NC_014210  Ndas_2087  two component transcriptional regulator, LuxR family  54.88 
 
 
247 aa  207  7e-53  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.73112  normal 
 
 
-
 
NC_013595  Sros_5499  response regulator receiver protein  56.74 
 
 
213 aa  207  8e-53  Streptosporangium roseum DSM 43021  Bacteria  decreased coverage  0.00659712  normal  0.108677 
 
 
-
 
NC_009380  Strop_1796  response regulator receiver  52.73 
 
 
230 aa  207  9e-53  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_7377  response regulator receiver protein  53.95 
 
 
216 aa  207  1e-52  Streptosporangium roseum DSM 43021  Bacteria  normal  0.92051  normal 
 
 
-
 
NC_013739  Cwoe_0262  two component transcriptional regulator, LuxR family  54.34 
 
 
225 aa  206  2e-52  Conexibacter woesei DSM 14684  Bacteria  normal  0.0721339  normal  0.623073 
 
 
-
 
NC_013947  Snas_0607  two component transcriptional regulator, LuxR family  52.34 
 
 
216 aa  206  2e-52  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_2518  two component transcriptional regulator, LuxR family  51.64 
 
 
225 aa  206  2e-52  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_4115  response regulator receiver protein  55.35 
 
 
216 aa  206  2e-52  Streptosporangium roseum DSM 43021  Bacteria  normal  0.071707  normal  0.0608108 
 
 
-
 
NC_013159  Svir_39200  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  50 
 
 
218 aa  206  2e-52  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.254077 
 
 
-
 
NC_013235  Namu_0651  two component transcriptional regulator, LuxR family  51.77 
 
 
241 aa  206  3e-52  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_4002  two component transcriptional regulator, LuxR family  54.42 
 
 
222 aa  206  3e-52  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.947887  normal  0.770727 
 
 
-
 
NC_013131  Caci_7843  two component transcriptional regulator, LuxR family  50.87 
 
 
231 aa  206  3e-52  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.176081 
 
 
-
 
NC_013739  Cwoe_0549  two component transcriptional regulator, LuxR family  54.84 
 
 
220 aa  206  3e-52  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_3251  response regulator receiver protein  50.23 
 
 
221 aa  205  4e-52  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0793449  normal 
 
 
-
 
NC_014210  Ndas_3601  two component transcriptional regulator, LuxR family  52.29 
 
 
222 aa  204  6e-52  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.324048  normal 
 
 
-
 
NC_013510  Tcur_2233  two component transcriptional regulator, LuxR family  55.05 
 
 
232 aa  204  6e-52  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.00197033  n/a   
 
 
-
 
NC_009921  Franean1_3185  two component LuxR family transcriptional regulator  53.6 
 
 
223 aa  204  6e-52  Frankia sp. EAN1pec  Bacteria  normal  0.704721  normal 
 
 
-
 
NC_013947  Snas_4662  two component transcriptional regulator, LuxR family  51.64 
 
 
221 aa  204  6e-52  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.142047  hitchhiker  0.00679998 
 
 
-
 
NC_012669  Bcav_0236  two component transcriptional regulator, LuxR family  54.5 
 
 
224 aa  204  6e-52  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_2717  two component transcriptional regulator, LuxR family  48.15 
 
 
223 aa  204  8e-52  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
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