More than 300 homologs were found in PanDaTox collection
for query gene Ndas_4872 on replicon NC_014211
Organism: Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_014211  Ndas_4872  two component transcriptional regulator, LuxR family  100 
 
 
232 aa  445  1.0000000000000001e-124  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.247388  normal 
 
 
-
 
NC_013159  Svir_39200  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  73.46 
 
 
218 aa  306  1.0000000000000001e-82  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.254077 
 
 
-
 
NC_013510  Tcur_1300  two component transcriptional regulator, LuxR family  68.72 
 
 
215 aa  271  6e-72  Thermomonospora curvata DSM 43183  Bacteria  normal  0.145336  n/a   
 
 
-
 
NC_013595  Sros_7377  response regulator receiver protein  69.81 
 
 
216 aa  266  2.9999999999999995e-70  Streptosporangium roseum DSM 43021  Bacteria  normal  0.92051  normal 
 
 
-
 
NC_009664  Krad_2518  two component transcriptional regulator, LuxR family  67.77 
 
 
225 aa  263  2e-69  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_0607  two component transcriptional regulator, LuxR family  62.98 
 
 
216 aa  263  2e-69  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_5550  two component transcriptional regulator, LuxR family  64.9 
 
 
213 aa  262  4e-69  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.159917  normal  0.0692801 
 
 
-
 
NC_013235  Namu_0544  two component transcriptional regulator, LuxR family  63.98 
 
 
215 aa  257  8e-68  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_4001  two component transcriptional regulator, LuxR family  63.93 
 
 
217 aa  255  4e-67  Actinosynnema mirum DSM 43827  Bacteria  normal  0.380782  n/a   
 
 
-
 
NC_013947  Snas_3639  two component transcriptional regulator, LuxR family  63.03 
 
 
215 aa  253  2.0000000000000002e-66  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.274763  normal 
 
 
-
 
NC_013595  Sros_0609  response regulator receiver protein  60 
 
 
218 aa  249  3e-65  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_3846  two component LuxR family transcriptional regulator  59.07 
 
 
249 aa  248  7e-65  Frankia sp. EAN1pec  Bacteria  normal  0.525033  normal  0.770826 
 
 
-
 
NC_013093  Amir_3004  two component transcriptional regulator, LuxR family  63.72 
 
 
223 aa  246  2e-64  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0522265  n/a   
 
 
-
 
NC_012669  Bcav_0404  two component transcriptional regulator, LuxR family  62.98 
 
 
218 aa  239  2e-62  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0987348  normal 
 
 
-
 
NC_013739  Cwoe_0676  two component transcriptional regulator, LuxR family  62.5 
 
 
215 aa  238  5.999999999999999e-62  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_1619  two component transcriptional regulator, LuxR family  56.07 
 
 
234 aa  235  5.0000000000000005e-61  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_4468  response regulator receiver protein  54.21 
 
 
219 aa  228  8e-59  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0876299  normal  0.32237 
 
 
-
 
NC_013510  Tcur_0110  two component transcriptional regulator, LuxR family  56.13 
 
 
222 aa  225  4e-58  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_3219  two component transcriptional regulator, LuxR family  60.39 
 
 
208 aa  224  6e-58  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_8800  response regulator receiver protein  56.4 
 
 
215 aa  223  1e-57  Streptosporangium roseum DSM 43021  Bacteria  normal  0.752334  normal 
 
 
-
 
NC_012669  Bcav_0102  two component transcriptional regulator, LuxR family  58.49 
 
 
221 aa  221  9.999999999999999e-57  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0637251  normal 
 
 
-
 
NC_014151  Cfla_0278  two component transcriptional regulator, LuxR family  53.74 
 
 
225 aa  219  3e-56  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.000789071 
 
 
-
 
NC_013947  Snas_3359  two component transcriptional regulator, LuxR family  51.39 
 
 
219 aa  218  6e-56  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0172663  normal 
 
 
-
 
NC_013595  Sros_6306  response regulator receiver protein  55.4 
 
 
209 aa  217  1e-55  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0259699  normal  0.0492304 
 
 
-
 
NC_013510  Tcur_2302  two component transcriptional regulator, LuxR family  55.71 
 
 
226 aa  216  2e-55  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0191252  n/a   
 
 
-
 
NC_013947  Snas_1734  two component transcriptional regulator, LuxR family  60.99 
 
 
188 aa  214  5.9999999999999996e-55  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.34281  normal 
 
 
-
 
NC_009664  Krad_4217  two component transcriptional regulator, LuxR family  55.76 
 
 
225 aa  214  9.999999999999999e-55  Kineococcus radiotolerans SRS30216  Bacteria  decreased coverage  0.000816589  normal  0.757819 
 
 
-
 
NC_013947  Snas_2037  two component transcriptional regulator, LuxR family  51.87 
 
 
225 aa  214  9.999999999999999e-55  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.137578 
 
 
-
 
NC_013159  Svir_26840  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  48.71 
 
 
239 aa  213  1.9999999999999998e-54  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.274056  normal  0.228776 
 
 
-
 
NC_013131  Caci_7415  two component transcriptional regulator, LuxR family  51.8 
 
 
228 aa  213  1.9999999999999998e-54  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.933403  normal 
 
 
-
 
NC_013595  Sros_5304  response regulator receiver protein  57.28 
 
 
220 aa  211  5.999999999999999e-54  Streptosporangium roseum DSM 43021  Bacteria  normal  0.128918  normal 
 
 
-
 
NC_009380  Strop_2458  response regulator receiver  51.64 
 
 
220 aa  211  7.999999999999999e-54  Salinispora tropica CNB-440  Bacteria  normal  0.0554598  normal 
 
 
-
 
NC_009953  Sare_4860  two component LuxR family transcriptional regulator  52.11 
 
 
219 aa  209  2e-53  Salinispora arenicola CNS-205  Bacteria  normal  0.452521  normal  0.0798716 
 
 
-
 
NC_014165  Tbis_1846  LuxR family two component transcriptional regulator  55.25 
 
 
226 aa  208  5e-53  Thermobispora bispora DSM 43833  Bacteria  normal  0.699471  normal 
 
 
-
 
NC_013521  Sked_21600  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  52.11 
 
 
222 aa  208  6e-53  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.49613  normal 
 
 
-
 
NC_013947  Snas_4946  two component transcriptional regulator, LuxR family  51.89 
 
 
224 aa  207  2e-52  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.13115  normal 
 
 
-
 
NC_014210  Ndas_4652  two component transcriptional regulator, LuxR family  52.09 
 
 
219 aa  206  2e-52  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0949639  normal 
 
 
-
 
NC_013093  Amir_7009  two component transcriptional regulator, LuxR family  52.58 
 
 
218 aa  206  3e-52  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0896567  n/a   
 
 
-
 
NC_013739  Cwoe_4937  two component transcriptional regulator, LuxR family  54.59 
 
 
224 aa  206  4e-52  Conexibacter woesei DSM 14684  Bacteria  normal  0.570807  normal  0.210467 
 
 
-
 
NC_013595  Sros_5905  response regulator receiver protein  54.38 
 
 
227 aa  205  5e-52  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0252894  normal  0.145246 
 
 
-
 
NC_009664  Krad_1198  two component transcriptional regulator, LuxR family  50.7 
 
 
225 aa  204  7e-52  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.109916  normal  0.0247339 
 
 
-
 
NC_013595  Sros_8793  response regulator receiver protein  51.16 
 
 
221 aa  203  2e-51  Streptosporangium roseum DSM 43021  Bacteria  normal  0.321987  normal 
 
 
-
 
NC_014210  Ndas_2087  two component transcriptional regulator, LuxR family  51.13 
 
 
247 aa  202  3e-51  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.73112  normal 
 
 
-
 
NC_013595  Sros_2533  response regulator receiver protein  52.61 
 
 
220 aa  202  4e-51  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.495874 
 
 
-
 
NC_013510  Tcur_4491  two component transcriptional regulator, LuxR family  54.17 
 
 
225 aa  202  4e-51  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_5619  response regulator receiver protein  52.58 
 
 
226 aa  201  6e-51  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0556461  normal  0.802866 
 
 
-
 
NC_013204  Elen_2822  two component transcriptional regulator, LuxR family  50.91 
 
 
228 aa  201  8e-51  Eggerthella lenta DSM 2243  Bacteria  normal  0.0415698  normal  0.590713 
 
 
-
 
NC_013093  Amir_2737  two component transcriptional regulator, LuxR family  52.75 
 
 
227 aa  201  9e-51  Actinosynnema mirum DSM 43827  Bacteria  normal  0.418014  n/a   
 
 
-
 
NC_013739  Cwoe_1269  two component transcriptional regulator, LuxR family  52.58 
 
 
226 aa  201  9.999999999999999e-51  Conexibacter woesei DSM 14684  Bacteria  normal  hitchhiker  0.00432991 
 
 
-
 
NC_013739  Cwoe_0356  two component transcriptional regulator, LuxR family  53.46 
 
 
220 aa  200  9.999999999999999e-51  Conexibacter woesei DSM 14684  Bacteria  normal  0.165726  normal  0.0985551 
 
 
-
 
NC_013131  Caci_8900  two component transcriptional regulator, LuxR family  54.46 
 
 
221 aa  199  1.9999999999999998e-50  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.967084  normal 
 
 
-
 
NC_013595  Sros_7301  response regulator receiver protein  53.3 
 
 
220 aa  200  1.9999999999999998e-50  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_3912  two component transcriptional regulator, LuxR family  47.73 
 
 
230 aa  199  1.9999999999999998e-50  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_012669  Bcav_3891  two component transcriptional regulator, LuxR family  54.72 
 
 
221 aa  200  1.9999999999999998e-50  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_1523  response regulator receiver protein  51.17 
 
 
215 aa  199  3e-50  Streptosporangium roseum DSM 43021  Bacteria  normal  0.894169  normal  0.0152488 
 
 
-
 
NC_009664  Krad_2599  two component transcriptional regulator, LuxR family  50 
 
 
211 aa  199  3e-50  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_4684  two component LuxR family transcriptional regulator  51.61 
 
 
223 aa  199  3e-50  Frankia sp. EAN1pec  Bacteria  normal  0.51425  normal 
 
 
-
 
NC_013170  Ccur_01320  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  46.96 
 
 
261 aa  199  3e-50  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_1020  response regulator receiver  52.13 
 
 
218 aa  199  3.9999999999999996e-50  Nocardioides sp. JS614  Bacteria  normal  0.648692  n/a   
 
 
-
 
NC_013441  Gbro_4119  response regulator receiver  51.82 
 
 
230 aa  198  5e-50  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_2717  two component transcriptional regulator, LuxR family  47.89 
 
 
223 aa  198  6e-50  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_1972  two component transcriptional regulator, LuxR family  52.09 
 
 
217 aa  197  1.0000000000000001e-49  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  unclonable  0.0000000794288  unclonable  0.0000000332591 
 
 
-
 
NC_013739  Cwoe_1616  two component transcriptional regulator, LuxR family  53.64 
 
 
229 aa  196  2.0000000000000003e-49  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_7812  two component transcriptional regulator, LuxR family  50.91 
 
 
227 aa  196  3e-49  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_3251  response regulator receiver protein  50.93 
 
 
221 aa  196  3e-49  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0793449  normal 
 
 
-
 
NC_012669  Bcav_1049  two component transcriptional regulator, LuxR family  51.82 
 
 
222 aa  196  3e-49  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.661499  normal  0.245945 
 
 
-
 
NC_008541  Arth_4134  two component LuxR family transcriptional regulator  45.45 
 
 
250 aa  195  4.0000000000000005e-49  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_5644  two component transcriptional regulator, LuxR family  52.51 
 
 
225 aa  195  4.0000000000000005e-49  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.114252 
 
 
-
 
NC_013947  Snas_1740  two component transcriptional regulator, LuxR family  48.13 
 
 
228 aa  194  9e-49  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013169  Ksed_04500  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  50.68 
 
 
244 aa  194  1e-48  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_008697  Noca_4902  response regulator receiver  54.03 
 
 
216 aa  194  1e-48  Nocardioides sp. JS614  Bacteria  normal  0.443208  normal  0.676579 
 
 
-
 
NC_013131  Caci_1951  two component transcriptional regulator, LuxR family  51.38 
 
 
226 aa  194  1e-48  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.0924411 
 
 
-
 
NC_013530  Xcel_1633  two component transcriptional regulator, LuxR family  51.87 
 
 
241 aa  194  1e-48  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.457155  n/a   
 
 
-
 
NC_013131  Caci_7843  two component transcriptional regulator, LuxR family  46.93 
 
 
231 aa  193  2e-48  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.176081 
 
 
-
 
NC_011886  Achl_2270  two component transcriptional regulator, LuxR family  49.55 
 
 
242 aa  193  2e-48  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000000000113212 
 
 
-
 
NC_013093  Amir_2225  two component transcriptional regulator, LuxR family  53.88 
 
 
209 aa  193  2e-48  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_4479  two component transcriptional regulator, LuxR family  49.32 
 
 
224 aa  193  2e-48  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.518456  normal  0.598935 
 
 
-
 
NC_013595  Sros_4577  response regulator receiver protein  47.75 
 
 
223 aa  192  3e-48  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.172592 
 
 
-
 
NC_013947  Snas_4662  two component transcriptional regulator, LuxR family  48.34 
 
 
221 aa  192  4e-48  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.142047  hitchhiker  0.00679998 
 
 
-
 
NC_013739  Cwoe_0549  two component transcriptional regulator, LuxR family  53.05 
 
 
220 aa  191  8e-48  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_1998  two component transcriptional regulator, LuxR family  51.35 
 
 
225 aa  191  8e-48  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.12496  normal 
 
 
-
 
NC_014210  Ndas_1477  two component transcriptional regulator, LuxR family  50.23 
 
 
234 aa  191  8e-48  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.594471  normal 
 
 
-
 
NC_013947  Snas_2557  two component transcriptional regulator, LuxR family  50.23 
 
 
224 aa  190  2e-47  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.231398  normal  0.0978001 
 
 
-
 
NC_013131  Caci_0683  two component transcriptional regulator, LuxR family  48 
 
 
234 aa  190  2e-47  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.344925  normal 
 
 
-
 
NC_013757  Gobs_2015  two component transcriptional regulator, LuxR family  49.55 
 
 
232 aa  189  2e-47  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.706703  n/a   
 
 
-
 
NC_014210  Ndas_3601  two component transcriptional regulator, LuxR family  51.17 
 
 
222 aa  190  2e-47  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.324048  normal 
 
 
-
 
NC_013131  Caci_7105  two component transcriptional regulator, LuxR family  48.44 
 
 
241 aa  190  2e-47  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.106023  normal  0.469545 
 
 
-
 
NC_013947  Snas_4575  two component transcriptional regulator, LuxR family  53.7 
 
 
224 aa  190  2e-47  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.703378  normal  0.112036 
 
 
-
 
NC_013093  Amir_6235  two component transcriptional regulator, LuxR family  53.99 
 
 
215 aa  190  2e-47  Actinosynnema mirum DSM 43827  Bacteria  normal  0.502704  n/a   
 
 
-
 
NC_013595  Sros_8243  response regulator receiver protein  51.66 
 
 
217 aa  190  2e-47  Streptosporangium roseum DSM 43021  Bacteria  normal  0.931194  normal  0.230681 
 
 
-
 
NC_013739  Cwoe_0262  two component transcriptional regulator, LuxR family  52.07 
 
 
225 aa  190  2e-47  Conexibacter woesei DSM 14684  Bacteria  normal  0.0721339  normal  0.623073 
 
 
-
 
NC_013521  Sked_16860  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  49.12 
 
 
258 aa  189  4e-47  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.85724  normal  0.036031 
 
 
-
 
NC_013947  Snas_0645  two component transcriptional regulator, LuxR family  49.76 
 
 
220 aa  189  4e-47  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.691779  normal 
 
 
-
 
NC_013093  Amir_4260  two component transcriptional regulator, LuxR family  51.16 
 
 
217 aa  188  5e-47  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_1903  two component transcriptional regulator, LuxR family  50.47 
 
 
225 aa  188  5.999999999999999e-47  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.202425  normal  0.182857 
 
 
-
 
NC_013172  Bfae_11600  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  51.39 
 
 
225 aa  188  5.999999999999999e-47  Brachybacterium faecium DSM 4810  Bacteria  decreased coverage  0.00120804  n/a   
 
 
-
 
NC_009664  Krad_1981  two component transcriptional regulator, LuxR family  48.85 
 
 
230 aa  188  7e-47  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_0651  two component transcriptional regulator, LuxR family  51.12 
 
 
241 aa  187  8e-47  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_03540  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  50.23 
 
 
226 aa  187  8e-47  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_1782  two component LuxR family transcriptional regulator  51.6 
 
 
230 aa  187  1e-46  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.0025253 
 
 
-
 
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