More than 300 homologs were found in PanDaTox collection
for query gene Amir_4001 on replicon NC_013093
Organism: Actinosynnema mirum DSM 43827



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013093  Amir_4001  two component transcriptional regulator, LuxR family  100 
 
 
217 aa  423  1e-117  Actinosynnema mirum DSM 43827  Bacteria  normal  0.380782  n/a   
 
 
-
 
NC_013159  Svir_39200  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  63.55 
 
 
218 aa  263  1e-69  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.254077 
 
 
-
 
NC_014211  Ndas_4872  two component transcriptional regulator, LuxR family  66.04 
 
 
232 aa  259  1e-68  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.247388  normal 
 
 
-
 
NC_013595  Sros_7377  response regulator receiver protein  63.3 
 
 
216 aa  252  2.0000000000000002e-66  Streptosporangium roseum DSM 43021  Bacteria  normal  0.92051  normal 
 
 
-
 
NC_013510  Tcur_1300  two component transcriptional regulator, LuxR family  61.29 
 
 
215 aa  251  6e-66  Thermomonospora curvata DSM 43183  Bacteria  normal  0.145336  n/a   
 
 
-
 
NC_013947  Snas_5550  two component transcriptional regulator, LuxR family  60.65 
 
 
213 aa  250  1e-65  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.159917  normal  0.0692801 
 
 
-
 
NC_009664  Krad_2518  two component transcriptional regulator, LuxR family  62.5 
 
 
225 aa  239  2e-62  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_0544  two component transcriptional regulator, LuxR family  59.53 
 
 
215 aa  238  6.999999999999999e-62  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_3639  two component transcriptional regulator, LuxR family  58.37 
 
 
215 aa  233  1.0000000000000001e-60  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.274763  normal 
 
 
-
 
NC_013595  Sros_0609  response regulator receiver protein  56.42 
 
 
218 aa  232  3e-60  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_3846  two component LuxR family transcriptional regulator  59.07 
 
 
249 aa  228  5e-59  Frankia sp. EAN1pec  Bacteria  normal  0.525033  normal  0.770826 
 
 
-
 
NC_013093  Amir_3004  two component transcriptional regulator, LuxR family  55.71 
 
 
223 aa  226  3e-58  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0522265  n/a   
 
 
-
 
NC_013947  Snas_0607  two component transcriptional regulator, LuxR family  55.56 
 
 
216 aa  225  4e-58  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_0404  two component transcriptional regulator, LuxR family  58.96 
 
 
218 aa  224  6e-58  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0987348  normal 
 
 
-
 
NC_013739  Cwoe_0676  two component transcriptional regulator, LuxR family  57.28 
 
 
215 aa  221  4.9999999999999996e-57  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_3219  two component transcriptional regulator, LuxR family  57.21 
 
 
208 aa  209  2e-53  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_1269  two component transcriptional regulator, LuxR family  51.85 
 
 
226 aa  207  9e-53  Conexibacter woesei DSM 14684  Bacteria  normal  hitchhiker  0.00432991 
 
 
-
 
NC_013530  Xcel_1619  two component transcriptional regulator, LuxR family  50.47 
 
 
234 aa  202  4e-51  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_8800  response regulator receiver protein  52.11 
 
 
215 aa  202  4e-51  Streptosporangium roseum DSM 43021  Bacteria  normal  0.752334  normal 
 
 
-
 
NC_009664  Krad_4217  two component transcriptional regulator, LuxR family  51.79 
 
 
225 aa  201  7e-51  Kineococcus radiotolerans SRS30216  Bacteria  decreased coverage  0.000816589  normal  0.757819 
 
 
-
 
NC_009953  Sare_1782  two component LuxR family transcriptional regulator  51.38 
 
 
230 aa  198  5e-50  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.0025253 
 
 
-
 
NC_013595  Sros_5304  response regulator receiver protein  52.04 
 
 
220 aa  198  6e-50  Streptosporangium roseum DSM 43021  Bacteria  normal  0.128918  normal 
 
 
-
 
NC_013093  Amir_6235  two component transcriptional regulator, LuxR family  52.56 
 
 
215 aa  197  7e-50  Actinosynnema mirum DSM 43827  Bacteria  normal  0.502704  n/a   
 
 
-
 
NC_013595  Sros_6306  response regulator receiver protein  50.93 
 
 
209 aa  196  2.0000000000000003e-49  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0259699  normal  0.0492304 
 
 
-
 
NC_012669  Bcav_0102  two component transcriptional regulator, LuxR family  51.14 
 
 
221 aa  195  4.0000000000000005e-49  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0637251  normal 
 
 
-
 
NC_013093  Amir_2737  two component transcriptional regulator, LuxR family  52.51 
 
 
227 aa  195  4.0000000000000005e-49  Actinosynnema mirum DSM 43827  Bacteria  normal  0.418014  n/a   
 
 
-
 
NC_013947  Snas_2037  two component transcriptional regulator, LuxR family  48.39 
 
 
225 aa  194  6e-49  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.137578 
 
 
-
 
NC_013510  Tcur_0110  two component transcriptional regulator, LuxR family  48.62 
 
 
222 aa  194  7e-49  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_1796  response regulator receiver  49.54 
 
 
230 aa  194  8.000000000000001e-49  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_1846  LuxR family two component transcriptional regulator  52.02 
 
 
226 aa  193  1e-48  Thermobispora bispora DSM 43833  Bacteria  normal  0.699471  normal 
 
 
-
 
NC_013739  Cwoe_1616  two component transcriptional regulator, LuxR family  49.55 
 
 
229 aa  193  2e-48  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_4860  two component LuxR family transcriptional regulator  47.66 
 
 
219 aa  192  3e-48  Salinispora arenicola CNS-205  Bacteria  normal  0.452521  normal  0.0798716 
 
 
-
 
NC_008697  Noca_4902  response regulator receiver  51.63 
 
 
216 aa  190  1e-47  Nocardioides sp. JS614  Bacteria  normal  0.443208  normal  0.676579 
 
 
-
 
NC_013510  Tcur_2302  two component transcriptional regulator, LuxR family  49.78 
 
 
226 aa  190  1e-47  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0191252  n/a   
 
 
-
 
NC_013947  Snas_1734  two component transcriptional regulator, LuxR family  53.72 
 
 
188 aa  189  2e-47  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.34281  normal 
 
 
-
 
NC_013159  Svir_26840  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  47.47 
 
 
239 aa  189  2.9999999999999997e-47  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.274056  normal  0.228776 
 
 
-
 
NC_014151  Cfla_0278  two component transcriptional regulator, LuxR family  48.61 
 
 
225 aa  188  5e-47  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.000789071 
 
 
-
 
NC_013947  Snas_5265  two component transcriptional regulator, LuxR family  50.93 
 
 
218 aa  187  9e-47  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_2458  response regulator receiver  46.26 
 
 
220 aa  187  1e-46  Salinispora tropica CNB-440  Bacteria  normal  0.0554598  normal 
 
 
-
 
NC_013595  Sros_4468  response regulator receiver protein  47.25 
 
 
219 aa  187  1e-46  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0876299  normal  0.32237 
 
 
-
 
NC_013595  Sros_5905  response regulator receiver protein  49.56 
 
 
227 aa  187  1e-46  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0252894  normal  0.145246 
 
 
-
 
NC_013595  Sros_8793  response regulator receiver protein  47.71 
 
 
221 aa  187  1e-46  Streptosporangium roseum DSM 43021  Bacteria  normal  0.321987  normal 
 
 
-
 
NC_013947  Snas_3359  two component transcriptional regulator, LuxR family  46.54 
 
 
219 aa  186  2e-46  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0172663  normal 
 
 
-
 
NC_014210  Ndas_3601  two component transcriptional regulator, LuxR family  50.68 
 
 
222 aa  186  3e-46  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.324048  normal 
 
 
-
 
NC_012669  Bcav_1049  two component transcriptional regulator, LuxR family  50.22 
 
 
222 aa  186  3e-46  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.661499  normal  0.245945 
 
 
-
 
NC_013093  Amir_2010  two component transcriptional regulator, LuxR family  50.7 
 
 
214 aa  186  3e-46  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_4946  two component transcriptional regulator, LuxR family  45.58 
 
 
224 aa  185  4e-46  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.13115  normal 
 
 
-
 
NC_013947  Snas_0645  two component transcriptional regulator, LuxR family  47.49 
 
 
220 aa  185  4e-46  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.691779  normal 
 
 
-
 
NC_013595  Sros_5619  response regulator receiver protein  47.95 
 
 
226 aa  185  6e-46  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0556461  normal  0.802866 
 
 
-
 
NC_013595  Sros_4508  response regulator receiver protein  48.84 
 
 
219 aa  184  1.0000000000000001e-45  Streptosporangium roseum DSM 43021  Bacteria  normal  0.401356  normal  0.568133 
 
 
-
 
NC_013739  Cwoe_0356  two component transcriptional regulator, LuxR family  49.55 
 
 
220 aa  182  2.0000000000000003e-45  Conexibacter woesei DSM 14684  Bacteria  normal  0.165726  normal  0.0985551 
 
 
-
 
NC_013947  Snas_4662  two component transcriptional regulator, LuxR family  46.98 
 
 
221 aa  183  2.0000000000000003e-45  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.142047  hitchhiker  0.00679998 
 
 
-
 
NC_013595  Sros_2533  response regulator receiver protein  47 
 
 
220 aa  183  2.0000000000000003e-45  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.495874 
 
 
-
 
NC_013947  Snas_1740  two component transcriptional regulator, LuxR family  46.98 
 
 
228 aa  182  3e-45  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_2599  two component transcriptional regulator, LuxR family  46.67 
 
 
211 aa  182  3e-45  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_7009  two component transcriptional regulator, LuxR family  46.3 
 
 
218 aa  182  4.0000000000000006e-45  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0896567  n/a   
 
 
-
 
NC_013510  Tcur_4491  two component transcriptional regulator, LuxR family  48.62 
 
 
225 aa  182  4.0000000000000006e-45  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_4479  two component transcriptional regulator, LuxR family  46.79 
 
 
224 aa  181  6e-45  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.518456  normal  0.598935 
 
 
-
 
NC_013595  Sros_0232  response regulator receiver protein  48.58 
 
 
213 aa  181  7e-45  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_1972  two component transcriptional regulator, LuxR family  47.25 
 
 
217 aa  181  7e-45  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  unclonable  0.0000000794288  unclonable  0.0000000332591 
 
 
-
 
NC_013739  Cwoe_4937  two component transcriptional regulator, LuxR family  50 
 
 
224 aa  181  7e-45  Conexibacter woesei DSM 14684  Bacteria  normal  0.570807  normal  0.210467 
 
 
-
 
NC_013595  Sros_3244  response regulator receiver protein  49.08 
 
 
218 aa  181  9.000000000000001e-45  Streptosporangium roseum DSM 43021  Bacteria  hitchhiker  0.000568428  normal  0.332742 
 
 
-
 
NC_013131  Caci_7415  two component transcriptional regulator, LuxR family  47.25 
 
 
228 aa  179  2e-44  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.933403  normal 
 
 
-
 
NC_013739  Cwoe_0549  two component transcriptional regulator, LuxR family  47.93 
 
 
220 aa  179  2.9999999999999997e-44  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_2087  two component transcriptional regulator, LuxR family  46.26 
 
 
247 aa  179  2.9999999999999997e-44  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.73112  normal 
 
 
-
 
NC_014165  Tbis_0951  LuxR family two component transcriptional regulator  47.93 
 
 
221 aa  179  4e-44  Thermobispora bispora DSM 43833  Bacteria  normal  0.392411  normal  0.343359 
 
 
-
 
NC_013595  Sros_3251  response regulator receiver protein  45.74 
 
 
221 aa  178  4e-44  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0793449  normal 
 
 
-
 
NC_013169  Ksed_04500  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  44.89 
 
 
244 aa  178  4.999999999999999e-44  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_013204  Elen_2822  two component transcriptional regulator, LuxR family  45.33 
 
 
228 aa  178  5.999999999999999e-44  Eggerthella lenta DSM 2243  Bacteria  normal  0.0415698  normal  0.590713 
 
 
-
 
NC_013530  Xcel_1633  two component transcriptional regulator, LuxR family  49.77 
 
 
241 aa  178  5.999999999999999e-44  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.457155  n/a   
 
 
-
 
NC_009664  Krad_1981  two component transcriptional regulator, LuxR family  46.85 
 
 
230 aa  178  5.999999999999999e-44  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_3337  two component transcriptional regulator, LuxR family  50.46 
 
 
254 aa  178  5.999999999999999e-44  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0952095  normal  0.130531 
 
 
-
 
NC_009921  Franean1_4684  two component LuxR family transcriptional regulator  45.25 
 
 
223 aa  178  7e-44  Frankia sp. EAN1pec  Bacteria  normal  0.51425  normal 
 
 
-
 
NC_013131  Caci_7843  two component transcriptional regulator, LuxR family  45.89 
 
 
231 aa  177  1e-43  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.176081 
 
 
-
 
NC_013131  Caci_0956  two component transcriptional regulator, LuxR family  47.71 
 
 
221 aa  177  1e-43  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_4652  two component transcriptional regulator, LuxR family  45.79 
 
 
219 aa  177  1e-43  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0949639  normal 
 
 
-
 
NC_013131  Caci_1951  two component transcriptional regulator, LuxR family  47.25 
 
 
226 aa  176  2e-43  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.0924411 
 
 
-
 
NC_009921  Franean1_7161  two component LuxR family transcriptional regulator  48.39 
 
 
225 aa  176  2e-43  Frankia sp. EAN1pec  Bacteria  normal  0.0588186  normal  0.118819 
 
 
-
 
NC_013947  Snas_2557  two component transcriptional regulator, LuxR family  46.12 
 
 
224 aa  176  2e-43  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.231398  normal  0.0978001 
 
 
-
 
NC_012669  Bcav_2710  two component transcriptional regulator, LuxR family  48.17 
 
 
230 aa  176  2e-43  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.248821  normal  0.606697 
 
 
-
 
NC_011886  Achl_3912  two component transcriptional regulator, LuxR family  43.84 
 
 
230 aa  176  3e-43  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_008541  Arth_4134  two component LuxR family transcriptional regulator  41.84 
 
 
250 aa  175  4e-43  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_5644  two component transcriptional regulator, LuxR family  48.61 
 
 
225 aa  175  4e-43  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.114252 
 
 
-
 
NC_013947  Snas_4575  two component transcriptional regulator, LuxR family  48.18 
 
 
224 aa  174  6e-43  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.703378  normal  0.112036 
 
 
-
 
NC_013131  Caci_8900  two component transcriptional regulator, LuxR family  47 
 
 
221 aa  175  6e-43  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.967084  normal 
 
 
-
 
NC_013521  Sked_03540  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  47.32 
 
 
226 aa  174  7e-43  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_2842  two component transcriptional regulator, LuxR family  47.98 
 
 
226 aa  174  9e-43  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.622781  decreased coverage  0.00305681 
 
 
-
 
NC_013441  Gbro_4119  response regulator receiver  45.21 
 
 
230 aa  173  9.999999999999999e-43  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_0767  LuxR response regulator receiver  46.51 
 
 
221 aa  173  9.999999999999999e-43  Thermobifida fusca YX  Bacteria  normal  0.88397  n/a   
 
 
-
 
NC_013131  Caci_0683  two component transcriptional regulator, LuxR family  43.67 
 
 
234 aa  173  9.999999999999999e-43  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.344925  normal 
 
 
-
 
NC_014210  Ndas_1477  two component transcriptional regulator, LuxR family  48.65 
 
 
234 aa  174  9.999999999999999e-43  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.594471  normal 
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  40.47 
 
 
216 aa  173  9.999999999999999e-43  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_2804  two component transcriptional regulator, LuxR family  45.33 
 
 
216 aa  174  9.999999999999999e-43  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.995251  normal  0.311692 
 
 
-
 
NC_013595  Sros_1523  response regulator receiver protein  45 
 
 
215 aa  173  1.9999999999999998e-42  Streptosporangium roseum DSM 43021  Bacteria  normal  0.894169  normal  0.0152488 
 
 
-
 
NC_013739  Cwoe_3768  two component transcriptional regulator, LuxR family  46.29 
 
 
223 aa  172  2.9999999999999996e-42  Conexibacter woesei DSM 14684  Bacteria  normal  0.28303  normal  0.763501 
 
 
-
 
NC_009664  Krad_1998  two component transcriptional regulator, LuxR family  48.18 
 
 
225 aa  172  2.9999999999999996e-42  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.12496  normal 
 
 
-
 
NC_012669  Bcav_3891  two component transcriptional regulator, LuxR family  47.66 
 
 
221 aa  172  2.9999999999999996e-42  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_4855  two component transcriptional regulator, LuxR family  45.85 
 
 
244 aa  172  3.9999999999999995e-42  Conexibacter woesei DSM 14684  Bacteria  normal  0.093919  normal 
 
 
-
 
NC_013947  Snas_1903  two component transcriptional regulator, LuxR family  46.05 
 
 
225 aa  172  3.9999999999999995e-42  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.202425  normal  0.182857 
 
 
-
 
NC_013093  Amir_4260  two component transcriptional regulator, LuxR family  46.26 
 
 
217 aa  171  5e-42  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
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