More than 300 homologs were found in PanDaTox collection
for query gene Amir_2811 on replicon NC_013093
Organism: Actinosynnema mirum DSM 43827



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013093  Amir_2811  two component transcriptional regulator, LuxR family  100 
 
 
217 aa  412  1e-114  Actinosynnema mirum DSM 43827  Bacteria  normal  0.206772  n/a   
 
 
-
 
NC_009664  Krad_2599  two component transcriptional regulator, LuxR family  71.05 
 
 
211 aa  259  2e-68  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_4860  two component LuxR family transcriptional regulator  72.11 
 
 
219 aa  258  4e-68  Salinispora arenicola CNS-205  Bacteria  normal  0.452521  normal  0.0798716 
 
 
-
 
NC_013595  Sros_4468  response regulator receiver protein  71.5 
 
 
219 aa  254  6e-67  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0876299  normal  0.32237 
 
 
-
 
NC_009380  Strop_2458  response regulator receiver  71.58 
 
 
220 aa  253  1.0000000000000001e-66  Salinispora tropica CNB-440  Bacteria  normal  0.0554598  normal 
 
 
-
 
NC_013131  Caci_7415  two component transcriptional regulator, LuxR family  67.01 
 
 
228 aa  251  8.000000000000001e-66  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.933403  normal 
 
 
-
 
NC_013530  Xcel_1619  two component transcriptional regulator, LuxR family  70.83 
 
 
234 aa  248  5e-65  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_3359  two component transcriptional regulator, LuxR family  69.31 
 
 
219 aa  246  1e-64  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0172663  normal 
 
 
-
 
NC_014210  Ndas_4652  two component transcriptional regulator, LuxR family  69.47 
 
 
219 aa  241  6e-63  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0949639  normal 
 
 
-
 
NC_009664  Krad_4217  two component transcriptional regulator, LuxR family  67.36 
 
 
225 aa  236  2e-61  Kineococcus radiotolerans SRS30216  Bacteria  decreased coverage  0.000816589  normal  0.757819 
 
 
-
 
NC_013595  Sros_3244  response regulator receiver protein  62.11 
 
 
218 aa  208  5e-53  Streptosporangium roseum DSM 43021  Bacteria  hitchhiker  0.000568428  normal  0.332742 
 
 
-
 
NC_013947  Snas_2557  two component transcriptional regulator, LuxR family  58.64 
 
 
224 aa  201  9.999999999999999e-51  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.231398  normal  0.0978001 
 
 
-
 
NC_008699  Noca_1020  response regulator receiver  54.9 
 
 
218 aa  199  3e-50  Nocardioides sp. JS614  Bacteria  normal  0.648692  n/a   
 
 
-
 
NC_013947  Snas_1903  two component transcriptional regulator, LuxR family  58.21 
 
 
225 aa  199  3e-50  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.202425  normal  0.182857 
 
 
-
 
NC_013170  Ccur_01320  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  54.5 
 
 
261 aa  196  2.0000000000000003e-49  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_5619  response regulator receiver protein  57.98 
 
 
226 aa  195  4.0000000000000005e-49  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0556461  normal  0.802866 
 
 
-
 
NC_013947  Snas_2037  two component transcriptional regulator, LuxR family  54.21 
 
 
225 aa  194  8.000000000000001e-49  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.137578 
 
 
-
 
NC_014210  Ndas_2087  two component transcriptional regulator, LuxR family  56.99 
 
 
247 aa  194  8.000000000000001e-49  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.73112  normal 
 
 
-
 
NC_013947  Snas_5644  two component transcriptional regulator, LuxR family  56.7 
 
 
225 aa  193  1e-48  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.114252 
 
 
-
 
NC_009664  Krad_1998  two component transcriptional regulator, LuxR family  56.13 
 
 
225 aa  193  2e-48  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.12496  normal 
 
 
-
 
NC_013595  Sros_8793  response regulator receiver protein  56.32 
 
 
221 aa  193  2e-48  Streptosporangium roseum DSM 43021  Bacteria  normal  0.321987  normal 
 
 
-
 
NC_013131  Caci_8900  two component transcriptional regulator, LuxR family  61.98 
 
 
221 aa  192  3e-48  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.967084  normal 
 
 
-
 
NC_013131  Caci_7160  two component transcriptional regulator, LuxR family  55.73 
 
 
224 aa  191  7e-48  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_26840  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  55.5 
 
 
239 aa  190  1e-47  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.274056  normal  0.228776 
 
 
-
 
NC_013739  Cwoe_4937  two component transcriptional regulator, LuxR family  57.29 
 
 
224 aa  190  1e-47  Conexibacter woesei DSM 14684  Bacteria  normal  0.570807  normal  0.210467 
 
 
-
 
NC_014151  Cfla_0278  two component transcriptional regulator, LuxR family  54.08 
 
 
225 aa  189  2e-47  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.000789071 
 
 
-
 
NC_014165  Tbis_1846  LuxR family two component transcriptional regulator  56.54 
 
 
226 aa  189  2e-47  Thermobispora bispora DSM 43833  Bacteria  normal  0.699471  normal 
 
 
-
 
NC_013595  Sros_5304  response regulator receiver protein  59.47 
 
 
220 aa  189  2.9999999999999997e-47  Streptosporangium roseum DSM 43021  Bacteria  normal  0.128918  normal 
 
 
-
 
NC_013131  Caci_0683  two component transcriptional regulator, LuxR family  50 
 
 
234 aa  189  2.9999999999999997e-47  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.344925  normal 
 
 
-
 
NC_009664  Krad_1198  two component transcriptional regulator, LuxR family  57.22 
 
 
225 aa  189  4e-47  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.109916  normal  0.0247339 
 
 
-
 
NC_013739  Cwoe_0356  two component transcriptional regulator, LuxR family  58.2 
 
 
220 aa  188  5.999999999999999e-47  Conexibacter woesei DSM 14684  Bacteria  normal  0.165726  normal  0.0985551 
 
 
-
 
NC_013595  Sros_0232  response regulator receiver protein  54.79 
 
 
213 aa  188  5.999999999999999e-47  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013441  Gbro_3238  regulatory protein LuxR  52.5 
 
 
228 aa  187  9e-47  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_1616  two component transcriptional regulator, LuxR family  58.59 
 
 
229 aa  187  1e-46  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_1269  two component transcriptional regulator, LuxR family  55.79 
 
 
226 aa  187  2e-46  Conexibacter woesei DSM 14684  Bacteria  normal  hitchhiker  0.00432991 
 
 
-
 
NC_013595  Sros_2533  response regulator receiver protein  53.61 
 
 
220 aa  186  2e-46  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.495874 
 
 
-
 
NC_013093  Amir_7009  two component transcriptional regulator, LuxR family  56.02 
 
 
218 aa  185  4e-46  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0896567  n/a   
 
 
-
 
NC_014210  Ndas_1972  two component transcriptional regulator, LuxR family  55.44 
 
 
217 aa  185  5e-46  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  unclonable  0.0000000794288  unclonable  0.0000000332591 
 
 
-
 
NC_013947  Snas_4946  two component transcriptional regulator, LuxR family  52.11 
 
 
224 aa  185  5e-46  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.13115  normal 
 
 
-
 
NC_013510  Tcur_0110  two component transcriptional regulator, LuxR family  51.52 
 
 
222 aa  184  7e-46  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_5905  response regulator receiver protein  55.44 
 
 
227 aa  184  8e-46  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0252894  normal  0.145246 
 
 
-
 
NC_013530  Xcel_1633  two component transcriptional regulator, LuxR family  55.45 
 
 
241 aa  184  8e-46  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.457155  n/a   
 
 
-
 
NC_013947  Snas_2469  two component transcriptional regulator, LuxR family  54.92 
 
 
214 aa  184  8e-46  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.126163  normal 
 
 
-
 
NC_012669  Bcav_0102  two component transcriptional regulator, LuxR family  56.32 
 
 
221 aa  184  8e-46  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0637251  normal 
 
 
-
 
NC_009921  Franean1_3390  two component LuxR family transcriptional regulator  54.31 
 
 
226 aa  184  1.0000000000000001e-45  Frankia sp. EAN1pec  Bacteria  normal  0.0389848  normal 
 
 
-
 
NC_013131  Caci_3748  two component transcriptional regulator, LuxR family  53.43 
 
 
236 aa  183  2.0000000000000003e-45  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_1740  two component transcriptional regulator, LuxR family  54.4 
 
 
228 aa  183  2.0000000000000003e-45  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_7812  two component transcriptional regulator, LuxR family  50.48 
 
 
227 aa  182  4.0000000000000006e-45  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_1403  LuxR response regulator receiver  54.17 
 
 
214 aa  182  4.0000000000000006e-45  Thermobifida fusca YX  Bacteria  normal  0.676683  n/a   
 
 
-
 
NC_013595  Sros_4508  response regulator receiver protein  52.63 
 
 
219 aa  181  7e-45  Streptosporangium roseum DSM 43021  Bacteria  normal  0.401356  normal  0.568133 
 
 
-
 
NC_013204  Elen_2822  two component transcriptional regulator, LuxR family  52.04 
 
 
228 aa  181  8.000000000000001e-45  Eggerthella lenta DSM 2243  Bacteria  normal  0.0415698  normal  0.590713 
 
 
-
 
NC_013131  Caci_7843  two component transcriptional regulator, LuxR family  53.14 
 
 
231 aa  181  9.000000000000001e-45  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.176081 
 
 
-
 
NC_009921  Franean1_7117  two component LuxR family transcriptional regulator  53.97 
 
 
214 aa  181  9.000000000000001e-45  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_2302  two component transcriptional regulator, LuxR family  55.26 
 
 
226 aa  181  9.000000000000001e-45  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0191252  n/a   
 
 
-
 
NC_013131  Caci_6705  two component transcriptional regulator, LuxR family  47.03 
 
 
258 aa  180  1e-44  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.318103  normal  0.0731204 
 
 
-
 
NC_012803  Mlut_21900  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  54.59 
 
 
230 aa  180  1e-44  Micrococcus luteus NCTC 2665  Bacteria  hitchhiker  0.00486265  n/a   
 
 
-
 
NC_013595  Sros_1523  response regulator receiver protein  52.85 
 
 
215 aa  180  1e-44  Streptosporangium roseum DSM 43021  Bacteria  normal  0.894169  normal  0.0152488 
 
 
-
 
NC_013093  Amir_6235  two component transcriptional regulator, LuxR family  56.61 
 
 
215 aa  180  2e-44  Actinosynnema mirum DSM 43827  Bacteria  normal  0.502704  n/a   
 
 
-
 
NC_009380  Strop_1796  response regulator receiver  55.44 
 
 
230 aa  180  2e-44  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_013441  Gbro_4119  response regulator receiver  51.56 
 
 
230 aa  179  2e-44  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_3185  two component LuxR family transcriptional regulator  53.06 
 
 
223 aa  179  2.9999999999999997e-44  Frankia sp. EAN1pec  Bacteria  normal  0.704721  normal 
 
 
-
 
NC_013131  Caci_8412  two component transcriptional regulator, LuxR family  55.56 
 
 
239 aa  179  2.9999999999999997e-44  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_3891  two component transcriptional regulator, LuxR family  56.48 
 
 
221 aa  179  4e-44  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_1731  two component transcriptional regulator, LuxR family  52.24 
 
 
224 aa  178  4.999999999999999e-44  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.550315  normal 
 
 
-
 
NC_013093  Amir_2232  two component transcriptional regulator, LuxR family  57.67 
 
 
302 aa  178  5.999999999999999e-44  Actinosynnema mirum DSM 43827  Bacteria  normal  0.501029  n/a   
 
 
-
 
NC_007333  Tfu_0767  LuxR response regulator receiver  55.5 
 
 
221 aa  177  8e-44  Thermobifida fusca YX  Bacteria  normal  0.88397  n/a   
 
 
-
 
NC_013131  Caci_6049  two component transcriptional regulator, LuxR family  56.25 
 
 
224 aa  177  1e-43  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.764436  normal 
 
 
-
 
NC_014210  Ndas_3601  two component transcriptional regulator, LuxR family  56.02 
 
 
222 aa  177  1e-43  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.324048  normal 
 
 
-
 
NC_013093  Amir_2737  two component transcriptional regulator, LuxR family  55.21 
 
 
227 aa  176  2e-43  Actinosynnema mirum DSM 43827  Bacteria  normal  0.418014  n/a   
 
 
-
 
NC_013739  Cwoe_4855  two component transcriptional regulator, LuxR family  53.88 
 
 
244 aa  176  2e-43  Conexibacter woesei DSM 14684  Bacteria  normal  0.093919  normal 
 
 
-
 
NC_014211  Ndas_4872  two component transcriptional regulator, LuxR family  52.06 
 
 
232 aa  177  2e-43  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.247388  normal 
 
 
-
 
NC_009921  Franean1_4684  two component LuxR family transcriptional regulator  52.66 
 
 
223 aa  176  2e-43  Frankia sp. EAN1pec  Bacteria  normal  0.51425  normal 
 
 
-
 
NC_012669  Bcav_1049  two component transcriptional regulator, LuxR family  55.9 
 
 
222 aa  176  2e-43  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.661499  normal  0.245945 
 
 
-
 
NC_013757  Gobs_2015  two component transcriptional regulator, LuxR family  50.95 
 
 
232 aa  176  3e-43  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.706703  n/a   
 
 
-
 
NC_013510  Tcur_1300  two component transcriptional regulator, LuxR family  47.2 
 
 
215 aa  176  3e-43  Thermomonospora curvata DSM 43183  Bacteria  normal  0.145336  n/a   
 
 
-
 
NC_013172  Bfae_25060  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  47.64 
 
 
222 aa  176  3e-43  Brachybacterium faecium DSM 4810  Bacteria  normal  0.444591  n/a   
 
 
-
 
NC_013595  Sros_4577  response regulator receiver protein  50.25 
 
 
223 aa  176  3e-43  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.172592 
 
 
-
 
NC_013172  Bfae_11600  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  53.65 
 
 
225 aa  176  3e-43  Brachybacterium faecium DSM 4810  Bacteria  decreased coverage  0.00120804  n/a   
 
 
-
 
NC_013530  Xcel_2601  two component transcriptional regulator, LuxR family  54.08 
 
 
234 aa  175  5e-43  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.1212  n/a   
 
 
-
 
NC_008699  Noca_3643  two component LuxR family transcriptional regulator  50 
 
 
215 aa  175  5e-43  Nocardioides sp. JS614  Bacteria  normal  0.516516  n/a   
 
 
-
 
NC_013739  Cwoe_0262  two component transcriptional regulator, LuxR family  53.24 
 
 
225 aa  175  6e-43  Conexibacter woesei DSM 14684  Bacteria  normal  0.0721339  normal  0.623073 
 
 
-
 
NC_013947  Snas_4479  two component transcriptional regulator, LuxR family  51.05 
 
 
224 aa  175  6e-43  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.518456  normal  0.598935 
 
 
-
 
NC_014158  Tpau_2872  two component transcriptional regulator, LuxR family  52.91 
 
 
218 aa  175  6e-43  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_3639  two component transcriptional regulator, LuxR family  51.31 
 
 
215 aa  175  6e-43  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.274763  normal 
 
 
-
 
NC_008726  Mvan_5522  two component LuxR family transcriptional regulator  53.2 
 
 
219 aa  174  7e-43  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_6529  two component transcriptional regulator, LuxR family  53.06 
 
 
224 aa  174  9e-43  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.270807  normal  0.114568 
 
 
-
 
NC_013739  Cwoe_0549  two component transcriptional regulator, LuxR family  52.63 
 
 
220 aa  174  9e-43  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_2656  two component transcriptional regulator, LuxR family  54.69 
 
 
226 aa  174  9.999999999999999e-43  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.161573  normal 
 
 
-
 
NC_013595  Sros_8243  response regulator receiver protein  52.68 
 
 
217 aa  174  9.999999999999999e-43  Streptosporangium roseum DSM 43021  Bacteria  normal  0.931194  normal  0.230681 
 
 
-
 
NC_009664  Krad_4263  two component transcriptional regulator, LuxR family  51.04 
 
 
230 aa  172  1.9999999999999998e-42  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.455968 
 
 
-
 
NC_014210  Ndas_2024  two component transcriptional regulator, LuxR family  53.93 
 
 
220 aa  173  1.9999999999999998e-42  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.876474  normal 
 
 
-
 
NC_009921  Franean1_1652  two component LuxR family transcriptional regulator  56.14 
 
 
217 aa  173  1.9999999999999998e-42  Frankia sp. EAN1pec  Bacteria  normal  0.495895  normal  0.106337 
 
 
-
 
NC_013510  Tcur_2233  two component transcriptional regulator, LuxR family  54.08 
 
 
232 aa  172  2.9999999999999996e-42  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.00197033  n/a   
 
 
-
 
NC_012669  Bcav_3028  two component transcriptional regulator, LuxR family  55.38 
 
 
225 aa  172  2.9999999999999996e-42  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.211566  decreased coverage  0.0000266978 
 
 
-
 
NC_013739  Cwoe_3768  two component transcriptional regulator, LuxR family  53.09 
 
 
223 aa  172  3.9999999999999995e-42  Conexibacter woesei DSM 14684  Bacteria  normal  0.28303  normal  0.763501 
 
 
-
 
NC_008697  Noca_4896  response regulator receiver  52.88 
 
 
215 aa  172  5e-42  Nocardioides sp. JS614  Bacteria  normal  0.446448  normal  0.220667 
 
 
-
 
NC_013521  Sked_21600  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  47.69 
 
 
222 aa  171  5.999999999999999e-42  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.49613  normal 
 
 
-
 
NC_013521  Sked_03540  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  51.76 
 
 
226 aa  171  5.999999999999999e-42  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_0609  response regulator receiver protein  49.48 
 
 
218 aa  171  5.999999999999999e-42  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_0480  two component transcriptional regulator, LuxR family  52.6 
 
 
214 aa  171  7.999999999999999e-42  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
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