| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_3231 |
|---|
| Symbol | |
|---|
| ID | 6205209 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 4222520 |
|---|
| End bp | 4223149 |
|---|
| Gene Length | 630 bp |
|---|
| Protein Length | 209 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641692898 |
|---|
| Product | two component LuxR family transcriptional regulator |
|---|
| Protein accession | YP_001820111 |
|---|
| Protein GI | 182415045 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.229823 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0283688 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGAAA CGAGAAAGAC CCGTGTACTG CTGGTCGACG ACCACATGGC CATCCGGATG
GGCCTGATGA CGGCGATCAA CGACGCCCTG GACATGGAGG TCGTCGCCGA CGTGGAGGAC
GGCCAGGAGG CGATCGCGGC CTACCGCAAG TATCAGCCCG ACGTCGTGGT CCTCGATCTG
CGCATGCAGG GCATGAGCGG CGTGCAGACC CTGCACGCGC TGCGCGCGGA ATTTGGCGCG
GTGCGGGTGC TGGTCTACAG CAACTACGCC CGGGGCGAGG AGGTGTATCA GGCCATCAAG
GCTGGCGCCG CCGGTTTCGT GGTCAAGGAG ATGGCGCTCG ATCGGCTGTT GGAAGCCATC
CGCGTGGTGA ATTCGGGCGG ACAATACATT CCGGAGCAGG TGGCGGCGCG CATTGCCGAG
CGGCTGCTGG CGGGGCTGTC GCCGCGCGAG ATGGAGGTCC TGAAACTCCT GGCGAAGGGG
CTGAGCAACA AGGAAATTGC CACGCAGTTG GGACTGGTGG TCGGGACCAT CAAGATCTAC
GTGGCGAATA TCTTCAACAA GCTCGGCGTG TCAGACCGGA CGCAGGCGCT CGTGACCGCG
GTGAAGCGCG GGATTATCGA CATCGAGTGA
|
|---|
| Protein sequence | MNETRKTRVL LVDDHMAIRM GLMTAINDAL DMEVVADVED GQEAIAAYRK YQPDVVVLDL
RMQGMSGVQT LHALRAEFGA VRVLVYSNYA RGEEVYQAIK AGAAGFVVKE MALDRLLEAI
RVVNSGGQYI PEQVAARIAE RLLAGLSPRE MEVLKLLAKG LSNKEIATQL GLVVGTIKIY
VANIFNKLGV SDRTQALVTA VKRGIIDIE
|
|---|
| |