| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1148 |
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| Symbol | |
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| ID | 5455429 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 1266054 |
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| End bp | 1268819 |
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| Gene Length | 2766 bp |
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| Protein Length | 921 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640876718 |
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| Product | regulatory protein LuxR |
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| Protein accession | YP_001412426 |
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| Protein GI | 154251602 |
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| COG category | [K] Transcription |
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| COG ID | [COG2909] ATP-dependent transcriptional regulator |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.108504 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 63 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGGGG CATTGGAACC GAAACCGTCT CGCGCGGCCG CGCGTGACGG AAACCTGTCG
CTGCTTCCCG CGACGAACAA GCTCGGGCGC GGCGCGGCCG CGGGCGCAAA CAATCTCGTT
TTGCGCAAGC ATCAGCTCGA CCGGTTGAAA AATCACACCG GCGTCCGTCT CATCGTCGTG
CAGGCGCCCG CCGGCTTCGG CAAGACCACG CTCCTCCGTC AATATTGTGC ATGGCGCGAG
GCGCAGGGAA GCCGGGTCGC ATGGCTGCAC CTGGAAGCGC ATTACGCAGA CCCGTCCCGT
TTTCTGCGTC TTGTCTGCGA GGCGGTGGCA GGCGCCATCG AGGAGGAAAG CCCGTCAGCT
GCCCTCCCGG ACAACTCGTC AGCTTCAATT CAGGATTTCC TTCGCGTTGT CCGCGGCACC
GATGTCGGCA TCGTTGTCGT CGTCGACAAT TTCGAGCAAG CCGCTCATTC GGGCATGGAA
GCCGTCATCG CGCAGCTCGT CCGCGTTCTC CCGCAGAACG TGCAGCTCTG CATCGGCACG
CGCGTCATTC CCGCCATAAA TCTGCCGCGC CTCCAGCTTC GCGAACAGGC GGTTGTCGTC
AATGTCGAGG GCTTGCGTTT CCGCGCCAAC GAAACCACTG AATTCTTCCG CGAGTTCCGG
GACATCTCTG AGGAAGAACT GGATAAATAT CAGGTGGCGA CGGATGGCTG GCCCGCCGCC
CTTCAATGCA TTCGTCTTTC CATGCGTGGC CGCACGGGCA GGGCAAAGCC GCTTCCCATT
TCCGGCGTCA CGCCGGACCT GATCGACTTC CTTGCAACCG ACGTCTTTGA AAATCTGTCG
GGTGACATTC AGCGTGCGCT TCTCGATGCC TGCATGCCGG AACGCATTTG CCCGGAACTT
CTCGAGTCGA TTTCCGGCCG GCCGGACGGC GAGGGCAGTC TCGGCGAGAT AGAACATCTC
GGTCTCTTCC TCACACCCGT CGATATGGAT CATCGCTGGT TCCGGTTTCA CACCGTCTTC
CGCCAGGTGC TGCTGACCCG CCTCCGCCGC GAACTCTCGG AGGCCGAAAT TCTCGCGCGC
CATCGGAAGA TCGCCGAGTG GTATGCCGCC CACGGCTTTT CCGAGGAAGC GATCCTTCAC
TATATCGAGG CAACGGATCA GGAAGCTGCC GCAGCACTCC TGAACGCGAT CATCGGCCGC
CTCGTCAACG AGGAGCGGCT CGATCTCATT GTCCGCTACA CGGACCGCCT CTCCCCCGAT
GTCATCCAGA ACTACGAACA CATCCTCAAC GCCGCCATCG TCGCTTATGG CTTCCGCCGC
GAATTCATCA AGGCAAATCG AATTATCGCT CTCCGCCGTG CCGCGCTGGA ACGCGAGAAT
GCGTCGAAAG AGGCCTGGGG CGTCCACCAT TACACGCGCA TCTTCACCAC CGCCGCGCAG
GATCAGGTGG TGGAGATCGG CCGCACGGCG CAACTGGCGC TGGACCATCT TGCCGATGCC
CCCGGCCTCG AATATGCCGT CGCGCTCAAT GCCCGCGCCT ATTGGCTTTA CCTGAACAGC
AAGTTCGAGG AAGCGCGCGA AGCCCTGGCG CAGGCCCGCG CCCTTCACGA CGAGGCGCAT
AATCTTTTCG GCCTCTCATA CTGTGAATGG ATCTACGCCA ATGTCCTCTC GACGCAGGGC
CGCAATGAAG AGGCGCTGAA AAGCCTGAAG CAGGCACAAA TACATAATGA CGAAGGCGCC
ACCGCCAGCG TCACCGCCGG CTCCGTCATC GCTGCTTGTC TCGCCGAAAC GCTTTACGAG
AAAAACTGCA TCGCGGAAGC CGAAATGCTT CTCCACGATC ATCTCCTTCT CCTCGAACAA
CAGGCGATTG TCGAACCGCT GGCACTCGCC TTCCTCACAA TGGCTCGCGT CGCCATGCTG
AGGGGCGAGG AGCGCGAGGC CGAGGAAGTC CTCGACCGGA TGATGTATCT CGGACACCGC
TACAACCTTC GCCGCCTCGT CATCTACGCC AAGGCCGAGC TCGTCCGCCA GGCGACGCTG
GCCGGCGATC TCGACAAGGC GCGCACGCGC TTCGCAAGCA TGGGGCAGGG CGAAAACGAC
GGCGAAGACG ATCTCGTCTA TTTCGCGGGT GAGACCGAAG CGCAGACGAT CACCGAAGCC
CGCCTGCTCA TCCTCGCCGG CCGTCATGCC GATGCCCGCG CGCTGCTCCA GCCCGCCGCC
CGCAAGGCGC GCTCGCAGCG CCGCATGCGC CGCTTCCTCA AGCTCAATCT CCTGCTCGCC
ATCTCGCTCA ATGTCGAAGG CCAGGTGAAT TCCGCCCGCC GCGCCTTGAT CGAGGCCTTG
CAGGTCGGCG CGCCGGATCA GTTCATTCGT CTCATTCTCG ATGAAGGCCC GCAGGCCCTC
CGCCTTCTGC ATGAAGCGCG CGCCGCCCTG CCGAAGTTCC CGGACCTGCC GCAAAAGGAC
AGCGTCTCCG CCTATCTCGA CCGCCTGCTC AGCGAAGCCG GCGAATTCGC GCCCGCGCTC
ATGCCCGATG CAGGGCATGA CGAAAACGAC GATATCTCGC CGCACCTCCT CGAGGAACTC
ACCGATCGCG AACGCGAAAT TCTGCGCCTC GTCTCCAACG GCTTCTCCAA CAAGGCCCTC
GCAGATCGCC TTTCTCTCTC CACCAACACG GTGAAATGGC ACCTCCGCAA CATCTTCGAG
AAGCTGCAGA TCGGCAATCG CATGCAGGCC GTTTCCGTCG CCCGCCACTT CGGTCTCATC
GACTGA
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| Protein sequence | MAGALEPKPS RAAARDGNLS LLPATNKLGR GAAAGANNLV LRKHQLDRLK NHTGVRLIVV
QAPAGFGKTT LLRQYCAWRE AQGSRVAWLH LEAHYADPSR FLRLVCEAVA GAIEEESPSA
ALPDNSSASI QDFLRVVRGT DVGIVVVVDN FEQAAHSGME AVIAQLVRVL PQNVQLCIGT
RVIPAINLPR LQLREQAVVV NVEGLRFRAN ETTEFFREFR DISEEELDKY QVATDGWPAA
LQCIRLSMRG RTGRAKPLPI SGVTPDLIDF LATDVFENLS GDIQRALLDA CMPERICPEL
LESISGRPDG EGSLGEIEHL GLFLTPVDMD HRWFRFHTVF RQVLLTRLRR ELSEAEILAR
HRKIAEWYAA HGFSEEAILH YIEATDQEAA AALLNAIIGR LVNEERLDLI VRYTDRLSPD
VIQNYEHILN AAIVAYGFRR EFIKANRIIA LRRAALEREN ASKEAWGVHH YTRIFTTAAQ
DQVVEIGRTA QLALDHLADA PGLEYAVALN ARAYWLYLNS KFEEAREALA QARALHDEAH
NLFGLSYCEW IYANVLSTQG RNEEALKSLK QAQIHNDEGA TASVTAGSVI AACLAETLYE
KNCIAEAEML LHDHLLLLEQ QAIVEPLALA FLTMARVAML RGEEREAEEV LDRMMYLGHR
YNLRRLVIYA KAELVRQATL AGDLDKARTR FASMGQGEND GEDDLVYFAG ETEAQTITEA
RLLILAGRHA DARALLQPAA RKARSQRRMR RFLKLNLLLA ISLNVEGQVN SARRALIEAL
QVGAPDQFIR LILDEGPQAL RLLHEARAAL PKFPDLPQKD SVSAYLDRLL SEAGEFAPAL
MPDAGHDEND DISPHLLEEL TDREREILRL VSNGFSNKAL ADRLSLSTNT VKWHLRNIFE
KLQIGNRMQA VSVARHFGLI D
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