More than 300 homologs were found in PanDaTox collection
for query gene Patl_4080 on replicon NC_008228
Organism: Pseudoalteromonas atlantica T6c



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008228  Patl_4080  diguanylate cyclase  100 
 
 
418 aa  861    Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_00199  response regulator/GGDEF domain protein  49.76 
 
 
426 aa  413  1e-114  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_0081  response regulator/GGDEF domain-containing protein  40.96 
 
 
419 aa  299  7e-80  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_00466  Putative two-component system regulatory protein with GGDEF domain  38.01 
 
 
414 aa  281  1e-74  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.6149  n/a   
 
 
-
 
NC_008700  Sama_1511  response regulator receiver protein  37.89 
 
 
416 aa  276  5e-73  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_007498  Pcar_0581  response regulator  39.15 
 
 
417 aa  275  1.0000000000000001e-72  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.0000040809  n/a   
 
 
-
 
NC_009831  Ssed_3346  response regulator/GGDEF domain-containing protein  39.17 
 
 
417 aa  275  1.0000000000000001e-72  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_03374  Response regulator containing a CheY-like receiver domain and a GGDEF domain  38.94 
 
 
419 aa  271  1e-71  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.67607  n/a   
 
 
-
 
NC_009783  VIBHAR_03265  hypothetical protein  36.01 
 
 
403 aa  270  4e-71  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009831  Ssed_1723  diguanylate cyclase  36.14 
 
 
420 aa  265  1e-69  Shewanella sediminis HAW-EB3  Bacteria  normal  0.428268  hitchhiker  0.00000158997 
 
 
-
 
NC_013512  Sdel_0659  diguanylate cyclase  35.17 
 
 
417 aa  264  2e-69  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  0.0149639  n/a   
 
 
-
 
NC_008599  CFF8240_1193  diguanylate cyclase  34.68 
 
 
415 aa  265  2e-69  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_2407  response regulator receiver modulated diguanylate cyclase  36.52 
 
 
443 aa  263  4.999999999999999e-69  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0296488 
 
 
-
 
NC_007643  Rru_A0085  response regulator receiver modulated diguanylate cyclase  35.48 
 
 
453 aa  258  2e-67  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_2855  response regulator receiver modulated diguanylate cyclase  36.25 
 
 
415 aa  257  3e-67  Shewanella woodyi ATCC 51908  Bacteria  normal  0.220747  hitchhiker  0.000676798 
 
 
-
 
NC_009715  CCV52592_0462  3-deoxy-d-manno-octulosonic-acid transferase  35.24 
 
 
422 aa  254  3e-66  Campylobacter curvus 525.92  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_1334  response regulator receiver modulated diguanylate cyclase  35.97 
 
 
447 aa  253  5.000000000000001e-66  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_2323  response regulator receiver modulated diguanylate cyclase  36.71 
 
 
445 aa  252  9.000000000000001e-66  Desulfovibrio vulgaris DP4  Bacteria  normal  0.123075  unclonable  0.0000172862 
 
 
-
 
NC_007575  Suden_1780  diguanylate cyclase  36.19 
 
 
414 aa  250  3e-65  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_2518  GGDEF domain-containing protein  35.28 
 
 
407 aa  248  1e-64  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009802  CCC13826_1984  threonine dehydratase  34.62 
 
 
418 aa  248  1e-64  Campylobacter concisus 13826  Bacteria  normal  0.241676  n/a   
 
 
-
 
NC_008345  Sfri_2466  diguanylate cyclase  36.74 
 
 
406 aa  247  2e-64  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.0503371  n/a   
 
 
-
 
NC_011369  Rleg2_2153  response regulator receiver modulated diguanylate cyclase  38.17 
 
 
443 aa  244  1.9999999999999999e-63  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.257798  normal  0.276429 
 
 
-
 
NC_009654  Mmwyl1_1933  response regulator receiver modulated diguanylate cyclase  34.39 
 
 
411 aa  240  2.9999999999999997e-62  Marinomonas sp. MWYL1  Bacteria  normal  0.380329  normal 
 
 
-
 
NC_009901  Spea_1684  response regulator receiver modulated diguanylate cyclase  36.18 
 
 
400 aa  239  5e-62  Shewanella pealeana ATCC 700345  Bacteria  normal  0.16221  n/a   
 
 
-
 
NC_010506  Swoo_3514  response regulator receiver modulated diguanylate cyclase  34.92 
 
 
427 aa  239  5.999999999999999e-62  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008789  Hhal_2233  response regulator receiver modulated diguanylate cyclase  33.01 
 
 
428 aa  228  1e-58  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_0621  response regulator receiver modulated diguanylate cyclase  31.34 
 
 
415 aa  228  1e-58  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.649156 
 
 
-
 
NC_009439  Pmen_0478  response regulator receiver modulated diguanylate cyclase  32.51 
 
 
422 aa  210  4e-53  Pseudomonas mendocina ymp  Bacteria  normal  0.60604  normal 
 
 
-
 
NC_003912  CJE0746  response regulator/GGDEF domain-containing protein  27.21 
 
 
414 aa  173  6.999999999999999e-42  Campylobacter jejuni RM1221  Bacteria  normal  0.0447686  n/a   
 
 
-
 
NC_008787  CJJ81176_0671  response regulator/GGDEF domain-containing protein  27.21 
 
 
414 aa  173  6.999999999999999e-42  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  normal  n/a   
 
 
-
 
NC_009707  JJD26997_1356  response regulator/GGDEF domain-containing protein  26.73 
 
 
414 aa  168  2e-40  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  n/a   
 
 
-
 
NC_012039  Cla_0652  two component response regulator  30.5 
 
 
414 aa  166  1.0000000000000001e-39  Campylobacter lari RM2100  Bacteria  normal  0.267728  n/a   
 
 
-
 
NC_011769  DvMF_1131  response regulator receiver sensor signal transduction histidine kinase  35.22 
 
 
500 aa  156  5.0000000000000005e-37  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_013223  Dret_0825  response regulator receiver modulated serine phosphatase  41.92 
 
 
526 aa  155  8e-37  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.126425  normal  0.339318 
 
 
-
 
NC_008751  Dvul_0579  response regulator receiver sensor signal transduction histidine kinase  35.63 
 
 
487 aa  153  5.9999999999999996e-36  Desulfovibrio vulgaris DP4  Bacteria  normal  0.721447  normal 
 
 
-
 
NC_014248  Aazo_1477  response regulator receiver modulated diguanylate cyclase  31.73 
 
 
317 aa  153  7e-36  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_0178  response regulator receiver modulated diguanylate cyclase  31.42 
 
 
322 aa  148  1.0000000000000001e-34  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.895619 
 
 
-
 
NC_010505  Mrad2831_0755  response regulator receiver modulated diguanylate cyclase  33.56 
 
 
298 aa  147  5e-34  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.893944 
 
 
-
 
NC_007519  Dde_0180  response regulator receiver domain-containing protein  33.07 
 
 
273 aa  145  1e-33  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_0115  response regulator receiver modulated diguanylate cyclase  31.96 
 
 
304 aa  145  1e-33  Pelobacter propionicus DSM 2379  Bacteria  normal  0.113218  n/a   
 
 
-
 
NC_011145  AnaeK_3557  response regulator receiver modulated diguanylate cyclase  34.44 
 
 
322 aa  144  4e-33  Anaeromyxobacter sp. K  Bacteria  normal  0.457648  n/a   
 
 
-
 
NC_011891  A2cp1_3625  response regulator receiver modulated diguanylate cyclase  34.44 
 
 
322 aa  144  4e-33  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0195  response regulator receiver modulated diguanylate cyclase  32.21 
 
 
309 aa  143  6e-33  Geobacter uraniireducens Rf4  Bacteria  normal  0.0106599  n/a   
 
 
-
 
NC_011726  PCC8801_1139  response regulator receiver modulated diguanylate cyclase  32.57 
 
 
308 aa  142  7e-33  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_1169  response regulator receiver modulated diguanylate cyclase  32.57 
 
 
308 aa  142  7e-33  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_007760  Adeh_3473  response regulator receiver modulated diguanylate cyclase  34.11 
 
 
351 aa  142  9.999999999999999e-33  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU3376  GGDEF/response regulator receiver domain-containing protein  31.99 
 
 
308 aa  142  1.9999999999999998e-32  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_1577  response regulator receiver modulated diguanylate cyclase  28.25 
 
 
314 aa  141  3e-32  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_2023  response regulator receiver modulated diguanylate cyclase  31.48 
 
 
312 aa  141  3e-32  Marinomonas sp. MWYL1  Bacteria  normal  0.174701  normal 
 
 
-
 
NC_010814  Glov_3614  response regulator receiver modulated diguanylate cyclase  30.39 
 
 
310 aa  139  7e-32  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_3038  response regulator PleD  28.7 
 
 
457 aa  139  8.999999999999999e-32  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.372566  normal  0.319547 
 
 
-
 
NC_007517  Gmet_0069  response regulator receiver modulated diguanylate cyclase  31.68 
 
 
314 aa  138  2e-31  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.840661 
 
 
-
 
NC_007519  Dde_0178  response regulator receiver domain-containing protein  31.87 
 
 
272 aa  136  6.0000000000000005e-31  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_3271  PAS/PAC sensor hybrid histidine kinase  32.93 
 
 
1691 aa  136  7.000000000000001e-31  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_2815  response regulator receiver modulated diguanylate cyclase  32.9 
 
 
457 aa  134  1.9999999999999998e-30  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.631579  normal  0.0857187 
 
 
-
 
NC_008751  Dvul_2852  response regulator receiver protein  33.47 
 
 
268 aa  134  1.9999999999999998e-30  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_2413  response regulator PleD  28.7 
 
 
457 aa  134  3e-30  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.592932  normal  0.173821 
 
 
-
 
NC_011146  Gbem_1332  response regulator receiver modulated diguanylate cyclase  31.56 
 
 
306 aa  133  5e-30  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_1937  response regulator receiver protein  34.41 
 
 
269 aa  133  5e-30  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_009675  Anae109_3583  response regulator receiver modulated diguanylate cyclase  32.78 
 
 
322 aa  133  6e-30  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  hitchhiker  0.000864033 
 
 
-
 
NC_011989  Avi_1750  response regulator PleD  32.89 
 
 
457 aa  132  7.999999999999999e-30  Agrobacterium vitis S4  Bacteria  normal  0.263569  n/a   
 
 
-
 
NC_009439  Pmen_0723  response regulator receiver modulated diguanylate cyclase  30.07 
 
 
540 aa  132  7.999999999999999e-30  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_1795  response regulator receiver protein  34.63 
 
 
274 aa  132  7.999999999999999e-30  Sinorhizobium medicae WSM419  Bacteria  decreased coverage  0.00918371  hitchhiker  0.000651153 
 
 
-
 
NC_002939  GSU2313  response regulator  30.07 
 
 
301 aa  132  1.0000000000000001e-29  Geobacter sulfurreducens PCA  Bacteria  normal  0.483613  n/a   
 
 
-
 
NC_010002  Daci_1507  response regulator receiver modulated diguanylate cyclase  33.89 
 
 
308 aa  132  1.0000000000000001e-29  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.914031 
 
 
-
 
NC_011831  Cagg_1006  response regulator receiver modulated diguanylate cyclase  30.84 
 
 
312 aa  132  1.0000000000000001e-29  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_1432  response regulator PleD  28.35 
 
 
457 aa  131  2.0000000000000002e-29  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_3541  response regulator PleD  28.2 
 
 
457 aa  131  2.0000000000000002e-29  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2032  response regulator receiver modulated diguanylate cyclase  32.2 
 
 
310 aa  132  2.0000000000000002e-29  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2951  response regulator receiver modulated diguanylate cyclase  31.23 
 
 
306 aa  131  2.0000000000000002e-29  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_013522  Taci_0157  response regulator receiver modulated diguanylate cyclase  30.24 
 
 
917 aa  130  3e-29  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_0319  two component diguanylate cyclase  31.63 
 
 
661 aa  131  3e-29  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_3308  response regulator PleD  27.47 
 
 
457 aa  130  5.0000000000000004e-29  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.268667  normal 
 
 
-
 
NC_010424  Daud_1846  response regulator receiver modulated diguanylate cyclase  31.65 
 
 
314 aa  130  6e-29  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_2212  response regulator receiver modulated diguanylate cyclase  28.76 
 
 
543 aa  129  7.000000000000001e-29  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_013422  Hneap_0133  response regulator receiver modulated diguanylate cyclase  32.9 
 
 
461 aa  129  7.000000000000001e-29  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_4228  response regulator receiver modulated diguanylate cyclase  31.8 
 
 
334 aa  129  8.000000000000001e-29  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_3967  putative response regulator of a two-component system  35.44 
 
 
335 aa  129  8.000000000000001e-29  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.000645274  normal  0.0110626 
 
 
-
 
NC_011369  Rleg2_2154  response regulator receiver protein  33.95 
 
 
268 aa  129  9.000000000000001e-29  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.193377  normal  0.527206 
 
 
-
 
NC_011894  Mnod_7417  response regulator receiver modulated diguanylate cyclase  32.78 
 
 
457 aa  129  1.0000000000000001e-28  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.196799  n/a   
 
 
-
 
NC_002947  PP_1494  response regulator/GGDEF domain-containing protein  31.8 
 
 
335 aa  128  2.0000000000000002e-28  Pseudomonas putida KT2440  Bacteria  normal  normal  0.799611 
 
 
-
 
NC_010322  PputGB1_1099  response regulator receiver modulated diguanylate cyclase  31.8 
 
 
334 aa  128  2.0000000000000002e-28  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_4746  response regulator PleD  30.79 
 
 
466 aa  128  2.0000000000000002e-28  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0979514  normal  0.753316 
 
 
-
 
NC_012850  Rleg_2408  response regulator receiver protein  34.48 
 
 
276 aa  128  2.0000000000000002e-28  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.10805 
 
 
-
 
NC_008576  Mmc1_1484  response regulator receiver modulated diguanylate cyclase  30.99 
 
 
555 aa  128  2.0000000000000002e-28  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.0158649 
 
 
-
 
NC_013161  Cyan8802_2067  response regulator receiver modulated diguanylate cyclase  28.43 
 
 
317 aa  127  3e-28  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_2041  response regulator receiver modulated diguanylate cyclase  28.43 
 
 
317 aa  127  3e-28  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_010524  Lcho_3546  diguanylate cyclase with PAS/PAC sensor  39.46 
 
 
438 aa  127  4.0000000000000003e-28  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0176083 
 
 
-
 
NC_011989  Avi_2726  two component response regulator  34.98 
 
 
277 aa  127  4.0000000000000003e-28  Agrobacterium vitis S4  Bacteria  normal  0.54081  n/a   
 
 
-
 
NC_008254  Meso_1348  response regulator PleD  30.46 
 
 
457 aa  126  5e-28  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_2087  response regulator receiver modulated diguanylate cyclase  28.99 
 
 
544 aa  126  6e-28  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_1887  response regulator receiver modulated diguanylate cyclase  28.99 
 
 
544 aa  126  6e-28  Shewanella sp. MR-7  Bacteria  normal  normal  0.374169 
 
 
-
 
NC_007492  Pfl01_1058  response regulator receiver modulated diguanylate cyclase  33.84 
 
 
333 aa  126  9e-28  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.0856452  normal  0.699737 
 
 
-
 
NC_012560  Avin_29300  Response regulator  33.47 
 
 
310 aa  125  1e-27  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_3005  response regulator receiver modulated diguanylate cyclase  33.33 
 
 
303 aa  125  1e-27  Saccharophagus degradans 2-40  Bacteria  normal  hitchhiker  0.000288968 
 
 
-
 
NC_013421  Pecwa_3605  diguanylate cyclase with PAS/PAC and GAF sensors  43.03 
 
 
610 aa  125  1e-27  Pectobacterium wasabiae WPP163  Bacteria  normal  0.150413  n/a   
 
 
-
 
NC_013411  GYMC61_2326  response regulator receiver modulated diguanylate cyclase  30.57 
 
 
536 aa  124  2e-27  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007348  Reut_B3647  response regulator receiver modulated diguanylate cyclase  35.98 
 
 
359 aa  124  2e-27  Ralstonia eutropha JMP134  Bacteria  normal  0.745021  n/a   
 
 
-
 
NC_011146  Gbem_2715  response regulator receiver modulated diguanylate cyclase  31.65 
 
 
314 aa  125  2e-27  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
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