Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_4228 |
Symbol | |
ID | 5195104 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 4730394 |
End bp | 4731398 |
Gene Length | 1005 bp |
Protein Length | 334 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640588705 |
Product | response regulator receiver modulated diguanylate cyclase |
Protein accession | YP_001269536 |
Protein GI | 148549434 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATGATT TACCGATCGA AGGTTTCGCG ACCACCAACG AGAACTCGGC GATGGTGCTG CTGGTCGATG ACCAGGCCAT GATCGGCGAA GCGGTGCGGC GTGGCTTGGC CGATGAAGAC AACATCGACT TCCACTTCTG TGCCGACCCG CACCAGGCGG TGGCCCAGGC CATGCGCATC AAGCCCACGG TCATTCTTCA AGACCTGATC ATGCCTGGCC TGGACGGCTT GACCCTGGTG CGCGAATACC GCAACAACCC AGTGACCCAG GACATCCCGA TCATCGTCCT GTCGACCAAG GAAGACCCGC TGGTCAAGAG TGCAGCATTT GCCGCCGGGG CCAACGATTA CCTGGTCAAG CTGCCTGATA CCATCGAACT GGTGGCCCGC ATCCGCTACC ACTCGCGTTC CTACCTGACC CTGCTGCAGC GCGATGAGGC CTACCGTGCC CTGCGCGTCA GCCAGCAGCA GTTGCTTGAT TCCAACCTGA TGCTGCAGCG GCTGATGAAC TCCGATGGCC TGACCGGGCT GTCCAACCGT CGCCACTTCG ACGAGTACCT GGAGCTGGAG TGGCGCCGGG CCATGCGTGA ACAGCAGCAG TTGTCGTTGC TGATGATCGA TGTCGATTAT TTCAAGGCCT ACAACGACAG CTTTGGCCAC TTGGCCGGCG ACGAGGCCCT GCGCCAGGTG GCCGAAGCCA TTCGTAGCTC GTGCTCGCGG CCGACCGACC TGCCGGCGCG CTATGGCGGC GAAGAGTTTG CCCTGGTGCT GCCCAACACC TCGCCAGGTG GGGCGCGGCT GGTGGCCGAA AAACTGCGCC AGACCGTGCT GGGCCTTGGC ATCCCGCATA CTGCGTCGAC GGCTGATACG TGCTTGACCG TGAGCATCGG CCTGGCCACC CAGACTCCGG CTATCGGCAG CCATTGCCGG CAGCTGATTT CGGCGGCCGA TAAAGGTCTT TACCTGGCCA AGAACGGTGG GCGTAACCAA GTCGGCATCG CCTGA
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Protein sequence | MNDLPIEGFA TTNENSAMVL LVDDQAMIGE AVRRGLADED NIDFHFCADP HQAVAQAMRI KPTVILQDLI MPGLDGLTLV REYRNNPVTQ DIPIIVLSTK EDPLVKSAAF AAGANDYLVK LPDTIELVAR IRYHSRSYLT LLQRDEAYRA LRVSQQQLLD SNLMLQRLMN SDGLTGLSNR RHFDEYLELE WRRAMREQQQ LSLLMIDVDY FKAYNDSFGH LAGDEALRQV AEAIRSSCSR PTDLPARYGG EEFALVLPNT SPGGARLVAE KLRQTVLGLG IPHTASTADT CLTVSIGLAT QTPAIGSHCR QLISAADKGL YLAKNGGRNQ VGIA
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