| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4228 |
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| Symbol | |
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| ID | 5195104 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 4730394 |
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| End bp | 4731398 |
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| Gene Length | 1005 bp |
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| Protein Length | 334 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640588705 |
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| Product | response regulator receiver modulated diguanylate cyclase |
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| Protein accession | YP_001269536 |
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| Protein GI | 148549434 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATGATT TACCGATCGA AGGTTTCGCG ACCACCAACG AGAACTCGGC GATGGTGCTG
CTGGTCGATG ACCAGGCCAT GATCGGCGAA GCGGTGCGGC GTGGCTTGGC CGATGAAGAC
AACATCGACT TCCACTTCTG TGCCGACCCG CACCAGGCGG TGGCCCAGGC CATGCGCATC
AAGCCCACGG TCATTCTTCA AGACCTGATC ATGCCTGGCC TGGACGGCTT GACCCTGGTG
CGCGAATACC GCAACAACCC AGTGACCCAG GACATCCCGA TCATCGTCCT GTCGACCAAG
GAAGACCCGC TGGTCAAGAG TGCAGCATTT GCCGCCGGGG CCAACGATTA CCTGGTCAAG
CTGCCTGATA CCATCGAACT GGTGGCCCGC ATCCGCTACC ACTCGCGTTC CTACCTGACC
CTGCTGCAGC GCGATGAGGC CTACCGTGCC CTGCGCGTCA GCCAGCAGCA GTTGCTTGAT
TCCAACCTGA TGCTGCAGCG GCTGATGAAC TCCGATGGCC TGACCGGGCT GTCCAACCGT
CGCCACTTCG ACGAGTACCT GGAGCTGGAG TGGCGCCGGG CCATGCGTGA ACAGCAGCAG
TTGTCGTTGC TGATGATCGA TGTCGATTAT TTCAAGGCCT ACAACGACAG CTTTGGCCAC
TTGGCCGGCG ACGAGGCCCT GCGCCAGGTG GCCGAAGCCA TTCGTAGCTC GTGCTCGCGG
CCGACCGACC TGCCGGCGCG CTATGGCGGC GAAGAGTTTG CCCTGGTGCT GCCCAACACC
TCGCCAGGTG GGGCGCGGCT GGTGGCCGAA AAACTGCGCC AGACCGTGCT GGGCCTTGGC
ATCCCGCATA CTGCGTCGAC GGCTGATACG TGCTTGACCG TGAGCATCGG CCTGGCCACC
CAGACTCCGG CTATCGGCAG CCATTGCCGG CAGCTGATTT CGGCGGCCGA TAAAGGTCTT
TACCTGGCCA AGAACGGTGG GCGTAACCAA GTCGGCATCG CCTGA
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| Protein sequence | MNDLPIEGFA TTNENSAMVL LVDDQAMIGE AVRRGLADED NIDFHFCADP HQAVAQAMRI
KPTVILQDLI MPGLDGLTLV REYRNNPVTQ DIPIIVLSTK EDPLVKSAAF AAGANDYLVK
LPDTIELVAR IRYHSRSYLT LLQRDEAYRA LRVSQQQLLD SNLMLQRLMN SDGLTGLSNR
RHFDEYLELE WRRAMREQQQ LSLLMIDVDY FKAYNDSFGH LAGDEALRQV AEAIRSSCSR
PTDLPARYGG EEFALVLPNT SPGGARLVAE KLRQTVLGLG IPHTASTADT CLTVSIGLAT
QTPAIGSHCR QLISAADKGL YLAKNGGRNQ VGIA
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