| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4080 |
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| Symbol | |
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| ID | 4175869 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4905076 |
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| End bp | 4906332 |
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| Gene Length | 1257 bp |
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| Protein Length | 418 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638057116 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_663633 |
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| Protein GI | 109900378 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCCCAA AAGTCTTGAT AATTGACGAT AACGAACAAA GCGTAGACGT CATTGCCAGC
TTGATACTCA AAGCACAGTT AACCCCAGTT AAAGCGACTA GCCTGACTGC GGCGCAACAT
ATATTCTCGC ACTCAGCACC TGAAGATTTT TTATGTGCCA TCGTTGATTA TCGCCTGCCA
GACGCCCCCA TCGGTCAAGC GATTGACTTC ACCCTAGCCT CATTTTTACC GACCATAGTG
ACCACCGAAT TCTTAGATCC AGAAACCAGA GCCGGTATCC TGAATAAAAA CGTCATTGAC
TACATTCTGA AAGAAAACGA GCAGGTCTAT GAGTATTTAA GCGTGTTGCT CAGCCGTTTG
CACAAGAATA AGAGTGAAGG TGTATTAGTT GTCGATAACG CAAGAGTCAG CCGTCAGCGC
AGCATTTCGC TGTTACAGCG CCACAACTTT ATGACTCATG AGGCCACCAC CGGCCAACAA
GGTCTTGAGG CGCTCACTCG CTACAGCCAT ATAAAGTTAG TGATTGTTGC TAATAAGTTG
CCTGACATGA CCGGCATTGC ACTGCTCAAT GAAATTCGTA AGCGCGCCTC AAAAGACGAT
ATCGCGGTAA TAGGCTTGTC AGATCACAGT GACACCGGGG TTTCAGCTCG GTTTATTAAA
AGCGGAGCCA ACGATTATCT TGCCCAGCCC TATGGCCAAG AAGAATTCTT ATGCCGGATC
ATGCAAAACA TCGAATATAT CGAAAACATC GAACTGATAC GTAGGGCTGC CAATTCTGAT
TTTCTCACTG GCTTACCGAA TCGGCGACAC TTCTTCGAAC GGGCCGCAGC GGCGACCCAG
CTGGTACCGA AATGCCAAAC TTTGGCACTC ATTGACATCG ACCTATTCAA ATCAGTGAAC
GATACCTATG GCCATGATTG CGGTGATTAC ACCTTACGAG AAATCGCCAA ACTGGTTTCA
TCAACATTTG CGCCGCACAT TCCTGCACGC TTTGGCGGCG AAGAGTTTTG TGTGTTTTTA
CCAAATGTTG ATCTGCCCAG CGCTGTACAA CTCTTCGAAT CGTTTCGTGA GGCATTAGCC
CAGCTCACCT TCAAATTTGA AGGCAAAACG TTTCACTGCA CTGTGAGTAT TGGGCTAACA
GCCATCGCTA CAGGTGGGGT TAATAGTATG CTGCGAAAAG CCGATGAATA CCTCTACCAA
GCCAAGGCTG GCGGTCGCAA TCAAGTGGTA CACGACCCCG TAGAAGAAGT AGTTTAA
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| Protein sequence | MRPKVLIIDD NEQSVDVIAS LILKAQLTPV KATSLTAAQH IFSHSAPEDF LCAIVDYRLP
DAPIGQAIDF TLASFLPTIV TTEFLDPETR AGILNKNVID YILKENEQVY EYLSVLLSRL
HKNKSEGVLV VDNARVSRQR SISLLQRHNF MTHEATTGQQ GLEALTRYSH IKLVIVANKL
PDMTGIALLN EIRKRASKDD IAVIGLSDHS DTGVSARFIK SGANDYLAQP YGQEEFLCRI
MQNIEYIENI ELIRRAANSD FLTGLPNRRH FFERAAAATQ LVPKCQTLAL IDIDLFKSVN
DTYGHDCGDY TLREIAKLVS STFAPHIPAR FGGEEFCVFL PNVDLPSAVQ LFESFREALA
QLTFKFEGKT FHCTVSIGLT AIATGGVNSM LRKADEYLYQ AKAGGRNQVV HDPVEEVV
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