Gene Rmet_3967 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmet_3967 
Symbol 
ID4040825 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCupriavidus metallidurans CH34 
KingdomBacteria 
Replicon accessionNC_007974 
Strand
Start bp529677 
End bp530684 
Gene Length1008 bp 
Protein Length335 aa 
Translation table11 
GC content63% 
IMG OID637979391 
Productputative response regulator of a two-component system 
Protein accessionYP_586104 
Protein GI94312895 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.000645274 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0110626 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCAGAC AACTCAATTC GGCCGATGCG GCGGCCACCC ATGAATACCC GGCAATGGTG 
CTGCTGGTCG ACGACCAGGC CATCATCGGC GAGGCTATCC GGCGTGCGCT GGCCAGCGAG
TCCGATATCG ACTTCCACTA TTGCTCGCAG CCCGAAGAGG CCGTGACGGT GGCCGAGCGC
ACCAAGCCCA CCGTGATCTT GCAGGATCTG GTCATGCCCG GCACCGACGG GCTGACGTTG
GTGCGCCGCT ACCGCGAAAA CGCCACCACG CGCGATATTC CGATCATCGT GCTGTCGACG
AAGGAAGAGC CCACCATGAA GAGCGCGGCT TTCGCGGCCG GCGCCAACGA CTATCTGGTG
AAGCTTCCGG ATTCGATCGA GTTGATCGCG CGAATCCGCT ACCACTCTCG CTCTTACCTG
AATCTGCTGC AACGTGACGA GGCATATCGG GCGCTGCGCC AAAGCCAGCA GCAATTGCTT
GAGACCAATC TCGAACTGCA GCGGCTAACC AATTCCGACG GACTGACCTC CCTGTCGAAC
CGTCGCTACT TCGACGAGTA CCTGGGCGCG GAATGGAAAC GCGCCCAGCG CGAACAGACC
CAGCTCGCGC TACTGATGAT CGACGTCGAT GCATTCAAGG GCTACAACGA TACCTACGGC
CACGTGGCGG GCGACGAGGT ACTGCGCCGC GTGGCCGCCG TGATCCGCGA GAACTGCGCA
CGCCCGGCGG ACCTGCCCGC GCGCTTCGGC GGTGAGGAAT TCTCGATGAT CCTGCCGGCC
ACATCGCCCG GCGGCGCACG ACTGCTGGCC GAGAAGGTCA GGCGCGCGAT CGAGACGCTG
CGCATTCCGC ATGCCTGCTC CCCAACTGGC GGATTTGTCA CGGTCAGTAT CGGCGGCGCG
GTGATAGTGC CGGGAGGCGA TGCCGATTTC AGCCGGCTGA TAGAGGCTGC CGATGCTGGC
CTCTATCAGG CCAAGCGTAA TGGACGAAAC CAGGTAGTGA TGGCGTAG
 
Protein sequence
MPRQLNSADA AATHEYPAMV LLVDDQAIIG EAIRRALASE SDIDFHYCSQ PEEAVTVAER 
TKPTVILQDL VMPGTDGLTL VRRYRENATT RDIPIIVLST KEEPTMKSAA FAAGANDYLV
KLPDSIELIA RIRYHSRSYL NLLQRDEAYR ALRQSQQQLL ETNLELQRLT NSDGLTSLSN
RRYFDEYLGA EWKRAQREQT QLALLMIDVD AFKGYNDTYG HVAGDEVLRR VAAVIRENCA
RPADLPARFG GEEFSMILPA TSPGGARLLA EKVRRAIETL RIPHACSPTG GFVTVSIGGA
VIVPGGDADF SRLIEAADAG LYQAKRNGRN QVVMA